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DOE OSTI2024

Human-in-the-Loop: The Future of Machine Learning in Automated Electron Microscopy

Machine learning (ML) methods are progressively gaining acceptance in the electron microscopy community for de-noising, semantic segmentation, and dimensionality reduction of data post-acquisition. The introduction of the application programming interfaces (APIs) by major instrument manufacturers now allows the deployment of ML workflows in microscopes, not only for data analytics but also for real-time decision-making and feedback for microscope operation. However, the number of use cases for real-time ML remains remarkably small. Furthermore, we discuss some considerations in designing ML-based active experiments and pose that the likely strategy for the next several years will be human-in-the-loop automated experiments (hAE). In this paradigm, the ML learning agent directly controls beam position and image and spectroscopy acquisition functions, and a human operator monitors experiment progression in real and feature space of the system and tunes the policies of the ML agent to steer the experiment toward specific objectives.

47 OTHER INSTRUMENTATION↗

DOE OSTI2024

A new paradigm in electron microscopy: Automated microstructure analysis utilizing a dynamic segmentation convolutional neutral network

Over the past half century, the transmission electron microscope enabled insight into the fundamental arrangements and structures of materials. State-of-the-art electron microscopes can acquire large image datasets across multiple imaging modalities. However, the manual annotation process for feature or defect quantification may not be feasible with the modern microscope. Convolutional neural networks emerged to characterize individual microstructural features from an image in a cost-effective, consistent manner. However, many of these neural network approaches rely on thousands to hundreds of thousands of manual annotations of each feature type across hundreds of images to train the network for adequate performance. This work focused on the development and application of a pixel-wise defect detection machine-learning dynamic segmentation convolutional neural network with associated automated acquisition and postprocessing to identify microstructural features rapidly and quantitatively from a small initial dataset incorporating multiple imaging modes. The approach was demonstrated for characterization of superalloy 718 from both single image acquisition on multiple detectors to in-situ evolution captured with a single detector on a standard desktop computer to demonstrate the low barrier to entry required for widespread adoption. Pixel-by-pixel class identification was excellent with strong identification of chemically distinct phases, structurally distinct phases, and defect structures, thus demonstrating the new paradigm of machine learning-assisted characterization.

36 MATERIALS SCIENCE↗

DOE OSTI2024

The United States Department of Energy and National Institutes of Health Collaboration: Medical Care Advances by Discovery in Radiation Detection

A National Institutes of Health (NIH) and U.S. Department of Energy (DOE) Office of Science virtual workshop on shared general topics was held in July of 2021 and reported on in this publication in January of 2023. Following the inaugural 2021 joint meeting representatives from the DOE Office of Science and NIH met to discuss organizing a second joint workshop that would concentrate on radiation detection to bring together teams from both agencies and their grantee populations to stimulate collaboration and efficiency. To meet this scientific mission within the NIH and DOE radiation detection space, the organizers assembled workshop sessions covering the state–of–the–art in cameras, detectors, and sensors for radiation external and internal (diagnostic and therapeutic) to human, data acquisition and electronics, image reconstruction and processing, and the application of artificial intelligence. NIH and DOE are committed to continuing the process of convening a joint workshop every 12–24 months. This Special Report recaps the findings of this second workshop. Beyond showing only the innovations and areas of success, important gaps in our knowledge were defined and presented. Finally, we summarize by defining four areas of greatest opportunity and need that emerged from the unique, dynamic dialogue the in–person workshop provided the attendees.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

DOE OSTI2020

Design of a neutron microscope based on Wolter mirrors

The predominant geometry for a neutron imaging experiment is that of a pinhole camera. Here, this is primarily due to the difficulty in focusing neutrons due to the weak refractive index, which is also strongly chromatic. Proof of concept experiments demonstrated that neutron image forming lenses based on reflective Wolter mirrors can produce quantitative, high spatial resolution neutron images while also increasing the time resolution compared to the conventional pinhole camera geometry. Motivated by these results, we report the design of a neutron microscope where two Wolter mirrors replace condensing and objective lenses, in direct analogy with typical visible light microscopes. Ray tracing results indicate that this system will yield 3 µm spatial resolution images with an acquisition time of order <1 s (10 4 faster than currently possible at this spatial resolution) with a field of view of about 5 mm in diameter.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2021

Cloud Droplet Measurement System for the ARM Tethered Balloon System (TBS) Field Campaign Report

The Mesa Photonics' cloud droplet measurement system (CDMS) performs in situ measurement of droplet size distribution and droplet number density in clouds. These characteristics are important cloud microphysical properties that are critical input parameters for atmospheric models and are also useful for proper calibration and validation of performance of other atmospheric measurement instrumentation. This small campaign was the first project (out of two) that involved integration of the CDMS into the U.S. Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) user facility’s tethered balloon system (TBS) and its initial testing at the ARM Southern Great Plains (SGP) atmospheric observatory. The follow-up campaign (AFC07016) involved testing of the CDMS under relevant conditions at the third ARM Mobile Facility (AMF3) at Oliktok Point, Alaska and making in situ measurements in clouds. The goal of this small field campaign was to deploy the CDMS on the ARM TBS, demonstrate its integrity and compatibility with the TBS, and test the wireless telecommunication system in preparation for subsequent in-cloud measurements at ARM’s North Slope of Alaska (NSA) observatory at Utqiagvik (formerly Barrow). The specific technical objectives included: (1) Integration of the Mesa Photonics' CDMS into the ARM TBS, (2) testing of the wireless telecommunication system of the CDMS, (3) evaluating the data acquisition software and image processing algorithms especially under high-background-illumination conditions, and (4) testing the ruggedness of the instrument's optical alignment and other performance characteristics. All objectives have been successfully met. The mounting hardware was designed and built mostly at Sandia National Laboratories (SNL), which allowed reliable mounting of the CDMS on the TBS and co-locating the CDMS with other instruments. The field tests were performed by the principal investigator (PI) in collaboration with the TBS operational crew led by D. Dexheimer. The field testing demonstrated good compatibility of the CDMS with the TBS. During the TBS flights, the crew did not experience any operational issues with the CDMS. The instrument demonstrated reliable operational characteristics, including sufficient battery life and good thermal management. The wireless telecommunication system has been successfully tested at TBS flight altitudes of up to 1000 m. During all flights, the CDMS raw data were wirelessly transmitted to the ground station and processed in real time. The ruggedness of the instrument's optical alignment was evaluated by performing calibration of the CDMS (using Mesa Photonics' fixed-size monodisperse droplet generator) before and after the campaign. The calibration was stable within the instrument's measurement precision. In summary, the campaign demonstrated good compatibility of the Mesa Photonics' CDMS with the ARM TBS. The flight tests confirmed the mechanical integrity of the CDMS and stability of its optical layout, as well as reliability of the wireless telecommunication system. Successful completion of this campaign provided a solid basis for the next campaign (AFC07016, November 2020), that involved testing of the CDMS during in-cloud TBS flights at AMF3 at Oliktok Point.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

Towards interpretable Cryo-EM: disentangling latent spaces of molecular conformations

Molecules are essential building blocks of life and their different conformations (i.e., shapes) crucially determine the functional role that they play in living organisms. Cryogenic Electron Microscopy (cryo-EM) allows for acquisition of large image datasets of individual molecules. Recent advances in computational cryo-EM have made it possible to learn latent variable models of conformation landscapes. However, interpreting these latent spaces remains a challenge as their individual dimensions are often arbitrary. The key message of our work is that this interpretation challenge can be viewed as an Independent Component Analysis (ICA) problem where we seek models that have the property of identifiability. That means, they have an essentially unique solution, representing a conformational latent space that separates the different degrees of freedom a molecule is equipped with in nature. Thus, we aim to advance the computational field of cryo-EM beyond visualizations as we connect it with the theoretical framework of (nonlinear) ICA and discuss the need for identifiable models, improved metrics, and benchmarks. Moving forward, we propose future directions for enhancing the disentanglement of latent spaces in cryo-EM, refining evaluation metrics and exploring techniques that leverage physics-based decoders of biomolecular systems. Moreover, we discuss how future technological developments in time-resolved single particle imaging may enable the application of nonlinear ICA models that can discover the true conformation changes of molecules in nature. The pursuit of interpretable conformational latent spaces will empower researchers to unravel complex biological processes and facilitate targeted interventions. This has significant implications for drug discovery and structural biology more broadly. More generally, latent variable models are deployed widely across many scientific disciplines. Thus, the argument we present in this work has much broader applications in AI for science if we want to move from impressive nonlinear neural network models to mathematically grounded methods that can help us learn something new about nature.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS1975

LANDSAT-2 launch and flight activation. Launch through orbit 50 and orbit adjust operation

The results of the analysis conducted on the telemetry data from the prelaunch, launch, and flight activation phases of LANDSAT-2 spacecraft are presented according to subsystems and interrelationships that exist between subsystems. Subsystem characteristics are included along with the flight evaluation results. Flight data are compared to baseline data established at the 20 C plateau during thermal vacuum testing of the spacecraft. Evaluation guidelines are derived from the specifications developed from the LANDSAT program objectives: (1) acquisition of multispectral images of the surface of the earth; and (2) use of the LANDSAT-2 receiving, frequency translating, and transmitting equipment as a relay system to gather data from fixed earth-based sensor platforms which are operated by individual investigators. Data are presented on the first 50 orbits of the spacecraft.

Source record↗

NASA NTRS1975

Basic research and data analysis for the earth and ocean physics applications program and for the National Geodetic Satellite program

Data acquisition using single image and seven image data processing is used to provide a precise and accurate geometric description of the earth's surface. Transformation parameters and network distortions are determined, Sea slope along the continental boundaries of the U.S. and earth rotation are examined, along with close grid geodynamic satellite system. Data are derived for a mathematical description of the earth's gravitational field; time variations are determined for geometry of the ocean surface, the solid earth, gravity field, and other geophysical parameters.

Source record↗

NASA NTRS1977

An infrared foreoptics adaptor for the Learjet Telescope

A foreoptics adapter has been built for the Learjet telescope which permits simultaneous viewing of the visible star field in the image plane and acquisition of astronomical data at infrared wavelengths (less than 1 micrometer). The device uses an adjustable dichroic beamsplitter to transmit visible wavelengths to an eyepiece (or television camera), and to reflect infrared wavelengths to a port where an infrared detector system can be mounted. The instrument is intended as a multiple user facility for the Learjet telescope. This report describes the adapter and its use.

Erickson, E. F.↗

NASA NTRS1982

Active wavefront correction in large telescopes

Astronomical progress with the MMT telescope, which attains high-resolution imaging by partial compensation for atmospheric distortion, is discussed. The small tertiary and beam combiner mirrors at the MMT bring six images to a common focus, where there is a TV system for acquisition and guiding. Individual image positions can be controlled by stepper motors driving actuators on the secondaries, each step moving an image 0.05 arc seconds in the focal plane. The instrument's correction for image jiggle due to atmospheric turbulence and drift of the relative positions of the images due to gravitational and thermal effects on the structure are described. A scheme for correcting residual structural errors is discussed. It appears that the telescope can work to about the 17th visual magnitude. For faint sky limited objects comparable performance would require a perfectly rigid single mirror of the same aperture to have 50 percent more collecting area and cost at least 1.5 times more.

Angel, J. R. P.↗

NASA NTRS1984

Extreme UV measurements of a varied line-space Hitachi reflection grating - Efficiency and scattering

The first extreme UV measurements of a grating mechanically ruled with smooth variations in the grating constant are presented. The grating characteristics are summarized and a schematic of the testing apparatus is shown and described. The procedure for obtaining the absolute grating efficiency is given. The results for that efficiency as a function of wavelengths of 68, 170, 256, 304, 584, and 1216 A are reported and discussed. Efficiency measurements were also made as a function of position across the ruled width at 256 A and 87 deg incident angle, and the results are discussed. Scattering measurements performed via computer acquisition of diffracted image profiles are reported.

Edelstein, J.↗

NASA NTRS1992

The rotation period, direction of the north pole, and geodetic control network of Venus

Three related activities that use Magellan data to derive improved estimates of the rotation period and direction of the spin axis of Venus are discussed. These are the computation of the Magellan geodetic control network, the use of measurement landmarks identified in overlapping image strips to improve the spacecraft ephemeris, and the use of common points identified on both the Venera 15/16 and the Magellan images. Since seven years separate the acquisition of the Magellan and Venera images, it should be possible to compute an accurate rotation period and possibly the spin vector of Venus.

Davies, M. E.↗

NASA NTRS1996

Membrane Transfer Phenomena (MTP)

Progress has been made in several areas of the definition, design, and development of the Membrane Transport Apparatus (MTA) instrument and associated sensors and systems. Progress is also reported in the development of software modules for instrument control, experimental image and data acquisition, and data analysis.

Mason, Larry↗

NASA NTRS1997

Experimental Investigation of Jet Impingement Heat Transfer Using Thermochromic Liquid Crystals

Jet impingement cooling of a hypersonic airfoil leading edge is experimentally investigated using thermochromic liquid crystals (TLCS) to measure surface temperature. The experiment uses computer data acquisition with digital imaging of the TLCs to determine heat transfer coefficients during a transient experiment. The data reduction relies on analysis of a coupled transient conduction - convection heat transfer problem that characterizes the experiment. The recovery temperature of the jet is accounted for by running two experiments with different heating rates, thereby generating a second equation that is used to solve for the recovery temperature. The resulting solution requires a complicated numerical iteration that is handled by a computer. Because the computational data reduction method is complex, special attention is paid to error assessment. The error analysis considers random and systematic errors generated by the instrumentation along with errors generated by the approximate nature of the numerical methods. Results of the error analysis show that the experimentally determined heat transfer coefficients are accurate to within 15%. The error analysis also shows that the recovery temperature data may be in error by more than 50%. The results show that the recovery temperature data is only reliable when the recovery temperature of the jet is greater than 5 C, i.e. the jet velocity is in excess of 100 m/s. Parameters that were investigated include nozzle width, distance from the nozzle exit to the airfoil surface, and jet velocity. Heat transfer data is presented in graphical and tabular forms. An engineering analysis of hypersonic airfoil leading edge cooling is performed using the results from these experiments. Several suggestions for the improvement of the experimental technique are discussed.

Dempsey, Brian Paul↗

NASA NTRS1997

The Characteristics of Total Lightning Activity in Severe Florida Thunderstorms

Severe thunderstorms are defined by specific exceedance criteria regarding either wind speed (greater than or equal to 50 kts), hailstone diameter (greater than or equal to 3/4 inch), the occurrence of a tornado, or any combination thereof. Although traditional radar signatures of severe thunderstorms have been well documented, the characteristics of associated total lightning activity (both intracloud and cloud-to-ground) of severe thunderstorms remain poorly established. The reason for this are (1) less than 1% of all storms are actually severe, (2) intracloud lightning, which is typically the dominant form of electrical discharge within thunderstorms, is not routinely measured or recorded, (3) direct visual observations of intracloud lightning are obscured during the daytime, and (4) the migratory nature of many severe thunderstorms can make the accurate detection and mapping of intracloud lightning difficult when using fixed-location sensors. The recent establishment of LISDAD (Lightning Imaging Sensor Data Acquisition and Display - discussed in Goodman et al, this Meeting) has substantially addressed these limitations in east central Florida (ECFL). Analysis of total lightning flash Count histories using the LDAR (Lightning Detection And Ranging) system for known severe thunderstorms (currently irrespective of seasonal aspects and severe storm-type) has revealed flash rates exceeding 1 per second. This appears to be a necessary, but not sufficient,condition for most ECFL severe storm cases. The differences in radar-observed storm structure for high flash rate storms (to include both severe and non-severe categories) will be described together with the timing of peak flash rate vs. the timing of the severe weather manifestation. Comparisons with the satellite-bases OTD (Optical Transient Detector) overhead passes will also be presented when possible.

Williams, E.↗

NASA NTRS2007

High-Speed Noninvasive Eye-Tracking System

The figure schematically depicts a system of electronic hardware and software that noninvasively tracks the direction of a person s gaze in real time. Like prior commercial noninvasive eye-tracking systems, this system is based on (1) illumination of an eye by a low-power infrared light-emitting diode (LED); (2) acquisition of video images of the pupil, iris, and cornea in the reflected infrared light; (3) digitization of the images; and (4) processing the digital image data to determine the direction of gaze from the centroids of the pupil and cornea in the images. Relative to the prior commercial systems, the present system operates at much higher speed and thereby offers enhanced capability for applications that involve human-computer interactions, including typing and computer command and control by handicapped individuals,and eye-based diagnosis of physiological disorders that affect gaze responses.

Talukder, Ashit↗

NASA NTRS2012

Visible Light Spectroscopy of GEO Debris

Our goal is to understand the physical characteristics of debris at geosynchronous orbit (GEO). Our approach is to compare the observed reflectance as a function of wavelength with laboratory measurements of typical spacecraft surfaces to understand what the materials are likely to be. Because debris could be irregular in shape and tumbling at an unknown rate, rapid simultaneous measurements over a range of wavelengths are required. Acquiring spectra of optically faint objects with short exposure times to minimize these effects requires a large telescope. We describe optical spectroscopy obtained during 12-14 March 2012 with the IMACS imaging spectrograph on the 6.5-m 'Walter Baade' Magellan telescope at Las Campanas Observatory in Chile. When used in f/2 imaging mode for acquisition, this instrument has a field of view of 30 arc-minutes in diameter. After acquisition and centering of a GEO object, a 2.5 arc-second wide slit and a grism are moved into the beam for spectroscopy. We used a 200 l/mm grism blazed at 660 nm for wavelength coverage in the 500-900 nm region. Typical exposure times for spectra were 15-30 seconds. Spectra were obtained for five objects in the GEO regime listed as debris in the US Space Command public catalog, and one high area to mass ratio GEO object. In addition spectra were obtained of three cataloged IDCSP (Initial Defense Communications Satellite Program) satellites with known initial properties just below the GEO regime. All spectra were calibrated using white dwarf flux standards and solar analog stars. We will describe our experiences using Magellan, a telescope never used previously for orbital debris spectroscopy, and our initial results.

Seitzer, Patrick↗

NASA NTRS2017

HOTEX: An Approach for Global Mapping of Human Built-Up and Settlement Extent

Understanding the impacts of urbanization requires accurate and updatable urban extent maps. Here we present an algorithm for mapping urban extent at global scale using Landsat data. An innovative hierarchical object-based texture (HOTex) classification approach was designed to overcome spectral confusion between urban and nonurban land cover types. VIIRS nightlights data and MODIS vegetation index datasets are integrated as high-level features under an object-based framework. We applied the HOTex method to the GLS-2010 Landsat images to produce a global map of human built-up and settlement extent. As shown by visual assessments, our method could effectively map urban extent and generate consistent results using images with inconsistent acquisition time and vegetation phenology. Using scene-level cross validation for results in Europe, we assessed the performance of HOTex and achieved a kappa coefficient of 0.91, compared to 0.74 from a baseline method using per-pixel classification using spectral information.

Wang, Panshi↗