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At least 289 records · Page 16

High resolution X-ray spectroscopy of Supergiant HMXB 4U1700-37 during the compact object eclipse.

In this work, we present an analysis of the first observation of the iconic High Mass X-ray Binary 4U 1700-37 with the Chandra High Energy Transmission Gratings during an X-ray eclipse. The goal of the observation was to study the structure/physical conditions in the clumpy stellar wind through high resolution spectroscopy. We find that: a) emission line brightness from K shell transitions, corresponding to near neutral species, directly correlates with continuum illumination. However, these lines do not greatly diminish during eclipse. This is readily explained if fluorescence Kα emission comes from the bulk of the wind. b) The highly ionised Fe xxv and Fe xxvi Lyα diminish during eclipse. Thus, they must be produced in the vicinity of the compact object where log ξ > 3. c) to describe the emission line spectrum, the sum of two self consistent photo ionisation models with low ionisation (log ξ ~ -1) and high ionisation (log ξ ~2.4) is required. From their emission measures, the clump-to-interclump density ratio can be estimated to be nc/ni ~ 300. To fit the complex He-like Si xiii profile, the plasma requires a broadening with vbulk ~ 840 km s-1. Reproducing the observed r ≈ f line fluxes requires the addition of a third collisionally ionised plasma. d) Emission lines widths appear unresolved at the hetg gratings resolution with exception of Silicon. There is no clear radial segregation between (quasi)neutral and ionised species, consistent with cold wind clumps interspersed in a hot rarefied interclump medium.

79 ASTRONOMY AND ASTROPHYSICS↗

More high-impact atmospheric river-induced extreme precipitation events under warming in a high-resolution model

Extreme precipitation events, as occurred in Europe 2021, or western North America 2023, with an intensity of 75 mm/day or 100 mm/day, respectively, exert a catastrophic impact. Lower-resolution (~100 km) climate models cannot simulate the intensity, nor their response to greenhouse warming. Using a high-resolution (~25 km) model capable of simulating such events, here we show that frequency-weighted area of such events over western Europe and the west coast of North America likely expands by more than 80% under an approximately 4°C of global warming from the historical levels. Along the west coasts of Europe and North America, area impacted by atmospheric rivers-induced extreme precipitation events is projected to double, driven by intensified landfalling atmospheric rivers. Thermodynamic processes drive the increase, whereas dynamic processes reduce the intensity over western Europe but enhance it along the west coast of North America. Here our findings provide policy-relevant information for climate adaptation strategies.

54 ENVIRONMENTAL SCIENCES↗

Data and Scripts associated with “Lambda-PFLOTRAN: Workflow for Incorporating Organic Matter Chemistry Informed by Ultra High Resolution Mass Spectrometry into Biogeochemical Modeling.”

This data package is associated with the publication “Lambda-PFLOTRAN: Workflow for Incorporating Organic Matter Chemistry Informed by Ultra High Resolution Mass Spectrometry into Biogeochemical Modeling” submitted to Geoscientific Model Development (Muller et al., 2024). In this manuscript, organic matter chemistry and thermodynamics are directly connected to reactive transport simulators through the newly developed Lambda-PFLOTRAN (Parallel Reactive Flow and Transport model) workflow tool that succinctly incorporates organic matter chemistry data generated from Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) into reaction networks to simulate aerobic respiration of the organic matter and the resulting biogeochemistry. Lambda-PFLOTRAN is a python-based workflow, executed through a Jupyter Notebook interface, that digests raw FTICR-MS data, develops a representative reaction network based on substrate-explicit thermodynamic modeling (also termed lambda modeling due to its key thermodynamic parameter λ used therein), and completes a biogeochemical simulation with the open source, reactive flow, and transport code PFLOTRAN. This data package contains Jupyter Notebook based workflows for two test cases for running biogeochemical simulations of organic matter oxidation identified by FTICR-MS. It contains four primary folders (workflow, data, src, and analysis), a file-level metadata file (Muller_2024_Lambda_PFLOTRAN_Manuscript_Data_Package_flmd.csv) that lists all the files contained in this data package with a short description of each, and a data dictionary (Muller_2024_Lambda_PFLOTRAN_Manuscript_Data_Package_dd.csv) file that describes the tabular column headers. The ‘workflow’ folder contains the Jupyter Notebook based workflows for running the lambda analysis, PFLOTRAN simulation, sensitivity analysis and parameter estimation. The ‘data’ folder contains the FTICR-MS data, initial conditions, and incubation data for test cases 1 and 2 in folders titled ‘WHONDRS’ and ‘Colloids’, respectively. The data folder also has a ‘Database’ folder containing a reaction network for bulk organic matter (assumed to be CH2O) and a general database for PFLOTRAN (hanford_rxn_network). The CH2O reaction network defines bulk organic matter oxidation. Biogeochemical simulations are completed for both the lambda binned organic matter and bulk organic matter reaction networks. The ‘hanford_rxn_network’ database includes information required for PFLTORAN simulations including ion size, molar mass, and charge of the aqueous species, gases, and minerals phases. The ‘src’ folder contains python source codes for performing lambda analysis, PFLOTRAN simulation, sensitivity analysis and parameter estimation. The ‘analysis’ folder contains outputs from the test cases 1 and 2 including lambda analysis, PFLOTRAN runs and the calibration results.

54 ENVIRONMENTAL SCIENCES↗

Response of extreme precipitation to uniform surface warming in quasi-global aquaplanet simulations at high resolution

Projections of precipitation extremes in simulations with global climate models are very uncertain in the tropics, in part because of the use of parameterizations of deep convection and model deficiencies in simulating convective organization. Here, we analyse precipitation extremes in high-resolution simulations that are run without a convective parameterization on a quasi-global aquaplanet. The frequency distributions of precipitation rates and precipitation cluster sizes in the tropics of a control simulation are similar to the observed distributions. In response to climate warming, 3 h precipitation extremes increase at rates of up to 9 % K - 1 in the tropics because of a combination of positive thermodynamic and dynamic contributions. The dynamic contribution at different latitudes is connected to the vertical structure of warming using a moist static stability. When the precipitation rates are first averaged to a daily timescale and coarse-grained to a typical global climate-model resolution prior to calculating the precipitation extremes, the response of the precipitation extremes to warming becomes more similar to what was found previously in coarse-resolution aquaplanet studies. However, the simulations studied here do not exhibit the high rates of increase of tropical precipitation extremes found in projections with some global climate models. This article is part of a discussion meeting issue ‘Intensification of short-duration rainfall extremes and implications for flash flood risks’.

Science & Technology - Other Topics↗

Phosphorus speciation analysis of fatty-acid-based feedstocks and fast pyrolysis biocrudes via gel permeation chromatography inductively coupled plasma high-resolution mass spectrometry

Renewable feedstocks, such as lignocelulosic fast pyrolysis oils and both vegetable oil and animal fats, are becoming a viable alternative to petroleum for producing high-quality renewable transportation fuels. However, the presence of phosphorus-containing compounds, mainly from phospholipids, in these renewable feedstocks is known to poison and deactivate hydrotreating catalysts during fuel production. In this work, gel permeation chromatography (GPC) combined with inductively coupled plasma high-resolution mass spectrometry (ICP-HRMS) was used to analyze feedstocks including unprocessed soybean oil, animal fat, and pyrolysis oils from red oak and milorganite to identify phosphorus species. The results have shown the presence of a wide range of different phosphorous compounds among all the samples analysed in this work. The GPC-ICP-HRMS analyses of a vegetable oil and two animal fats have shown different fingerprints based on the molecular weight of each of the samples, highlighting the structural differences among their corresponding phosphorus-containing compounds. While the presence of low-molecular-weight species, such as phospholipids, was expected, several high-molecular-weight species (MW > 10 000 Da) have been found, suggesting that high-molecular-weight micelles or liposomes might have been formed due to the high concentration of phospholipids in these samples. Results obtained through the hydroxylation of a mix of phospholipids (asolectin) and its posterior GPC-ICP-HRMS agree with this hypothesis. With respect to the lignocellulosic catalytic fast pyrolysis oil samples, the GPC-ICP-HRMS results obtained suggest that either aggregation or polymerization reactions might have occurred during the pyrolysis process, yielding phosphorus-containing compounds with an approximate molecular weight above 91 000 kDa. In addition, an aggregation phenomenom has been observed for those phosphorus species present within the fast pyrolysis oils after being stored for 3 months, especially for those pyrolysis oils contaning pre-processed feedstocks, such as milorganite.

09 BIOMASS FUELS↗

Quantifying Phospholipids in Organic Samples Using a Hydrophilic Interaction Liquid Chromatography–Inductively Coupled Plasma High-Resolution Mass Spectrometry (HILIC-ICP-HRMS) Method

Here, in this study, a novel method using hydrophilic interaction liquid chromatography (HILIC) coupled with inductively coupled plasma high-resolution mass spectrometry (ICP-HRMS) was introduced for the quantification of phospholipids in oil samples. The method employed a bridged ethyl hybrid (BEH) stationary phase HILIC column with a tetrahydrofuran (THF)/water mobile phase, enhancing the solubility and detection of phospholipids. During the study, a gradient/matrix effect on ICP-HRMS sensitivity was observed and successfully compensated for experimentally, ensuring reliable quantification results. This approach has proven effective for a wide range of different oil samples including vegetable oils, animal fats, and phospholipid supplements. Notably, this method allowed the direct quantification of phospholipids in oil samples, bypassing the need for prior sample preparation methods, such as solid phase extraction (SPE), thereby streamlining the analytical process. The precision, accuracy, and reduced need for extensive sample preparation offered by this method mark a significant advancement in lipids analysis. Its robustness and broad applicability have substantial implications for industries such as food and renewable energy production, where both efficient and accurate lipid identification and quantification are crucial.

09 BIOMASS FUELS↗

Distributed Training for High Resolution Images: A Domain and Spatial Decomposition Approach

In this work we developed two Pytorch libraries using the PyTorch RPC interface for distributed deep learning approaches on high resolution images. The spatial decomposition library allows for distributed training on very large images, which otherwise wouldn’t be possible on a single GPU. The domain parallelism library allows for distributed training across multiple domain unlabeled data, by leveraging the domain separation architecture. Both of those libraries where tested on the Summit supercomputer at Oak Ridge National Laboratory at a moderate scale.

Tsaris, Aristeidis (aris)↗

Distributed Training for High Resolution Images: A Domain and Spatial Decomposition Approach

In this work we developed two Pytorch libraries using the PyTorch RPC interface for distributed deep learning approaches on high resolution images. The spatial decomposition library allows for distributedtraining on very large images, which otherwise won’t be possible on a single GPU. The domain parallelism library allows for distributed training across multiple domain unlabeled data, by leveraging the domain separation architecture. Both of those libraries were tested on the Summit supercomputer at a moderate scale, and we are releasing the code for both of them.

97 MATHEMATICS AND COMPUTING↗

EmSense: A High-Resolution Emulated Sensor for Experiments with the Smart Grid and Distributed Ledger Technology

This work involves the development of a device - EmSense (“Emulated Sensor”) - that emulates a high-resolution sensor for a power grid. The device collects raw current and voltage sensor data which derive from ORNL's signature library. This library is a dataset that ORNL curates from many different sources that include power systems from various utilities. The EmSense packages the data from the library in the form of IEC 61850 Sampled Value (SV) packets and then broadcasts these SV packets on the network. In another mode, EmSense can generate artificial sinusoidal data that appears as waveforms for voltage and current signals. EmSense has an internal algorithm for determining the period of a signal based on the data so that the period can be specified as a variable in the IEC 61850 packets. The purpose of EmSense is to allow for experimentation with the Dark Net Infrastructure where a variety of power line sensors must be represented along with their typical communication traffic. The EmSense device was developed in coordination with the software for receiving and processing the packets in the Distributed Ledger Technology (DLT) framework of the DarkNet Project. This receiving software must have a methodology for dealing with information of high velocity, variety, and volume. Experimenting with EmSense facilitates the development of such software. The results showed that the DLT framework and the trust-anchoring approach managed to process a large flow of traffic even with up to six instances of EmSense device broadcasting data. This was achieved without overfilling packet queues in the memory of the actual hardware of the DLT devices or causing the Central Processing Unit (CPU) of the hardware to be overwhelmed. The DLTs were also able to store the data in a compact and useful form for later analysis and archival purposes.

Werth, Aaron↗

Software for High-Resolution Flood Mapping With Sentinel-1 and Sentinel-2 via Misalignment-Robust Cross-Sensor Learning and Generative Despeckling

SF-26-078 This software provides a high-level workflow for satellite-based flood and surface-water mapping using Sentinel-1 SAR and Sentinel-2 multispectral imagery. It supports preparation of remote-sensing data, training and evaluation of deep-learning models, and generation of high-resolution water extent predictions, including methods to improve robustness to SAR speckle noise and cross-sensor image misalignment.

Feinstein, Jeremy [Argonne National Laboratory (AN↗

Reducing Long‐Standing Surface Ozone Overestimation in Earth System Modeling by High‐Resolution Simulation and Dry Deposition Improvement

The overestimation of surface ozone concentration in low‐resolution global atmospheric chemistry and climate models has been a long‐standing issue. We first update the ozone dry deposition scheme in both high‐ (0.25°) and low‐resolution (1°) Community Earth System Model (CESM) version 1.3 runs, by adding the effects of leaf area index and correcting the sunlit and shaded fractions of stomatal resistances. With this update, 5‐year‐long summer simulations (2015–2019) using the low‐resolution CESM still exhibit substantial ozone overestimation (by 6.0–16.2 ppbv) over the U.S., Europe, eastern China, and ozone pollution hotspots. The ozone dry deposition scheme is further improved by adjusting the leaf cuticle conductance, reducing the mean ozone bias by 19%, and increasing the model resolution further reduces the ozone overestimation by 43%. We elucidate the mechanism by which model grid spacing influences simulated ozone, revealing distinctive pathways in urban versus rural areas. In rural areas, grid spacing mainly affects daytime ozone levels, where additional NO x emissions from nearby urban areas result in an ozone boost and overestimation in low‐resolution simulations. In contrast, over urban areas, daytime ozone overestimation follows a similar mechanism due to the influence of volatile organic compounds from surrounding rural areas. However, nighttime ozone overestimation is closely linked to weakened NO titration owing to the redistribution of urban NO x to rural areas. Additionally, stratosphere‐troposphere exchange may also contribute to reducing ozone bias in high‐resolution simulations, warranting further investigation. This optimized high‐resolution CESM may enhance understanding of ozone formation mechanisms, sources, and changes in a warming climate.

54 ENVIRONMENTAL SCIENCES↗

Determining the 193 m Ir/ 192 Ir ratio from high-resolution X-ray measurements

Two pellets of iridium salt were irradiated at the center of the Flattop critical assembly, one at low neutron flux and the other at high flux. After that two counting samples were prepared from each pellet following a given chemical procedure. Measurements of the four counting samples were carried out with two high-resolution silicon drift detectors for over a year. Pulse height spectra of the L→M X-rays from 193 m Ir and 192 Ir were approximated with a Voigt function and the ratio of produced 193 m Ir and 192 Ir nuclei obtained. The 193 m Ir/ 192 Ir ratios from each measured spectrum are compared to identify possible systematic deviations.

38 RADIATION CHEMISTRY, RADIOCHEMISTRY, AND NUCLEA↗

High-resolution Near-infrared Spectroscopy of Diffuse Sources around MWC 1080

To reveal the origins of diffuse Hα emissions observed around the Herbig star MWC 1080, we have performed a high-resolution near-infrared (NIR) spectroscopic observation using the Immersion Grating Infrared Spectrograph. In the NIR H and K bands, we detected various emission lines (six hydrogen Brackett lines, seven H{sub 2} lines, and an [Fe ii] line) and compared their spatial locations with the optical (Hα and [S ii]) and radio ({sup 13}CO and CS) line maps. The shock-induced H{sub 2} and [Fe ii] lines indicate the presence of multiple outflows, consisting of at least three associated young stars in this region. The kinematics of H{sub 2} and [Fe ii] near the northeast (NE) cavity edge supports the idea that the NE main outflow from MWC 1080A is the blueshifted one with a low inclination angle. The H{sub 2} and [Fe ii] lines near the southeast molecular region newly reveal that additional highly blueshifted outflows originate from other young stars. The fluorescent H{sub 2} lines were found to trace photodissociation regions formed on the cylindrical surfaces of the main outflow cavity, which are expanding outward with a velocity of about 10–15 km s{sup −1}. For the Hα emission, we identify its components associated with two stellar outflows and two young stars in addition to the dominant component of MWC 1080A scattered by dust. We also report a few faint Hα features located ∼0.4 pc away in the southwest direction from MWC 1080A, which lie near the axes of the NE main outflow and one of the newly identified outflows.

74 ATOMIC AND MOLECULAR PHYSICS↗

Tracking Spatiotemporal Electric Potential in Batteries Using High-Resolution Operando X‑ray Transmission Imaging

The formation of significant concentration gradients across electrolytes in batteries affects the rate at which electrochemical reactions occur. In this work, we use high-resolution operando X-ray transmission imaging to capture spatiotemporal salt concentration profiles c(x,t) in a symmetric cell comprising a polymer electrolyte sandwiched between two lithium–indium alloy electrodes during a constant-current experiment followed by open-circuit relaxation. The decay of open-circuit potential is related to the concentration dependence of the potential across concentration cells, U. We show how operando c(x,t) data can be used to calculate the spatiotemporal electric potential “inside” the polarized electrolyte. We track the spatial- and time-dependent cell potential during the constant-current step and distinguish its two contributions: a concentration overpotential governed by U. and an ohmic contribution governed by ionic conductivity. Over most of the time window, the concentration overpotential dominates. At steady state, it is a factor of 7 larger than the ohmic contribution. Such findings indicate that efforts to design new polymer electrolytes should focus on minimizing concentration gradients.

Electrical conductivity↗

High-resolution crystal structures of Escherichia coli FtsZ bound to GDP and GTP

Bacterial cytokinesis is mediated by the Z-ring, which is formed by the prokaryotic tubulin homolog FtsZ. Recent data indicate that the Z-ring is composed of small patches of FtsZ protofilaments that travel around the bacterial cell by treadmilling. Treadmilling involves a switch from a relaxed (R) state, favored for monomers, to a tense (T) conformation, which is favored upon association into filaments. The R conformation has been observed in numerous monomeric FtsZ crystal structures and the T conformation in Staphylococcus aureus FtsZ crystallized as assembled filaments. However, while Escherichia coli has served as a main model system for the study of the Z-ring and the associated divisome, a structure has not yet been reported for E. coli FtsZ. To address this gap, structures were determined of the E. coli FtsZ mutant FtsZ(L178E) with GDP and GTP bound to 1.35 and 1.40 Å resolution, respectively. The E. coli FtsZ(L178E) structures both crystallized as straight filaments with subunits in the R conformation. These high-resolution structures can be employed to facilitate experimental cell-division studies and their interpretation in E. coli .

protofilaments↗

Reviews and syntheses: Opportunities for robust use of peak intensities from high-resolution mass spectrometry in organic matter studies

Abstract. Earth's biogeochemical cycles are intimately tied to the biotic and abiotic processing of organic matter (OM). Spatial and temporal variations in OM chemistry are often studied using direct infusion, high-resolution Fourier transform mass spectrometry (FTMS). An increasingly common approach is to use ecological metrics (e.g., within-sample diversity) to summarize high-dimensional FTMS data, notably Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS). However, problems can arise when FTMS peak-intensity data are used in a way that is analogous to abundances in ecological analyses (e.g., species abundance distributions). Using peak-intensity data in this way requires the assumption that intensities act as direct proxies for concentrations. Here, we show that comparisons of the same peak across samples (within-peak) may carry information regarding variations in relative concentration, but comparing different peaks (between-peak) within or between samples does not. We further developed a simulation model to study the quantitative implications of using peak intensities to compute ecological metrics (e.g., intensity-weighted mean properties and diversity) that rely on information about both within-peak and between-peak shifts in relative abundance. We found that, despite analytical limitations in linking concentration to intensity, ecological metrics often perform well in terms of providing robust qualitative inferences and sometimes quantitatively accurate estimates of diversity and mean molecular characteristics. We conclude with recommendations for the robust use of peak intensities for natural organic matter studies. A primary recommendation is the use and extension of the simulation model to provide objective guidance on the degree to which conceptual and quantitative inferences can be made for a given analysis of a given dataset. Broad use of this approach can help ensure rigorous scientific outcomes from the use of FTMS peak intensities in environmental applications.

54 ENVIRONMENTAL SCIENCES↗