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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 289 records · Page 16
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

Probabilistic predictions and uncertainty estimation for radiological and nuclear effects modeling

Better characterization of meteorological uncertainty is needed to predict the effects of radiological and nuclear releases in the atmosphere. Multi-physics ensembles of atmospheric simulations can estimate uncertainty of physical processes, but they are often limited for computational reasons. Because weather uncertainty is important for emergency response applications, but the conventional way of running multi-physics ensembles is infeasible, we have developed new machine learning-based methods that quickly estimate and identify key sources of meteorological uncertainty. Machine learning accelerates the analysis of weather uncertainty by iteratively learning about model physics options that affect plume predictions. We have demonstrated the power of machine learning by creating a large multi-physics weather and dispersion ensemble dataset containing 1,200 simulations for two hypothetical radiological release scenarios. By training on less than 10% of the ensemble, we can quickly and accurately predict different outcomes, including the mass of radiological material deposited and spatial distribution and extent of contaminated areas.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

CryoFold: Determining protein structures and data-guided ensembles from cryo-EM density maps

Cryoelectron microscopy requires molecular modeling for refinement of structures. Ensemble models arrive at low free-energy molecular structures, but are computationally expensive and limited to resolving only small proteins. Here, we introduce CryoFold, a pipeline of molecular dynamics simulations that determines ensembles of protein structures by integrating density data of varying sparsity at 3–5 Å resolution with sequence information and coarse-grained topological knowledge of the protein folds. We present six examples, folding proteins between 72 and 2,000 residues, including large membrane and multi-domain systems, and results from two Electron Microscopy Data Bank (EMDB) competitions. Driven by data from a single state, CryoFold discovers ensembles of common low-energy models together with rare low-probability structures that capture the equilibrium distribution of proteins constrained by the density maps. Many of these conformations are experimentally validated and functionally relevant. We arrive at a set of best practices for data-guided protein folding that are controlled using a Python graphical user interface (GUI).

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS2010

Shorebird Migration Patterns in Response to Climate Change: A Modeling Approach

The availability of satellite remote sensing observations at multiple spatial and temporal scales, coupled with advances in climate modeling and information technologies offer new opportunities for the application of mechanistic models to predict how continental scale bird migration patterns may change in response to environmental change. In earlier studies, we explored the phenotypic plasticity of a migratory population of Pectoral sandpipers by simulating the movement patterns of an ensemble of 10,000 individual birds in response to changes in stopover locations as an indicator of the impacts of wetland loss and inter-annual variability on the fitness of migratory shorebirds. We used an individual based, biophysical migration model, driven by remotely sensed land surface data, climate data, and biological field data. Mean stop-over durations and stop-over frequency with latitude predicted from our model for nominal cases were consistent with results reported in the literature and available field data. In this study, we take advantage of new computing capabilities enabled by recent GP-GPU computing paradigms and commodity hardware (general purchase computing on graphics processing units). Several aspects of our individual based (agent modeling) approach lend themselves well to GP-GPU computing. We have been able to allocate compute-intensive tasks to the graphics processing units, and now simulate ensembles of 400,000 birds at varying spatial resolutions along the central North American flyway. We are incorporating additional, species specific, mechanistic processes to better reflect the processes underlying bird phenotypic plasticity responses to different climate change scenarios in the central U.S.

Smith, James A.↗
DOE OSTI2021

Full structural ensembles of intrinsically disordered proteins from unbiased molecular dynamics simulations

Abstract Molecular dynamics (MD) simulation is widely used to complement ensemble-averaged experiments of intrinsically disordered proteins (IDPs). However, MD often suffers from limitations of inaccuracy. Here, we show that enhancing the sampling using Hamiltonian replica-exchange MD (HREMD) led to unbiased and accurate ensembles, reproducing small-angle scattering and NMR chemical shift experiments, for three IDPs of varying sequence properties using two recently optimized force fields, indicating the general applicability of HREMD for IDPs. We further demonstrate that, unlike HREMD, standard MD can reproduce experimental NMR chemical shifts, but not small-angle scattering data, suggesting chemical shifts are insufficient for testing the validity of IDP ensembles. Surprisingly, we reveal that despite differences in their sequence, the inter-chain statistics of all three IDPs are similar for short contour lengths (< 10 residues). The results suggest that the major hurdle of generating an accurate unbiased ensemble for IDPs has now been largely overcome.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS2014

Reply to Comment by Laprise on 'the Added Value to Global Model Projections of Climate Change by Dynamical Downscaling: a Case Study over the Continental U.S. Using the GISS-ModelE2 and WRF Models'

In his comment, Laprise raises several points that we agree merit consideration. His primary critique is that our study [Racherla et al., 2012] tested the ability of the WRF regional climate model to reproduce historical temperature and precipitation change relative to the driving global climate model (GCM) using only a single simulation rather than an ensemble. He asserts that the observed changes are smaller than the internal variability in the climate system (i.e., not statistically significant) and that thus a single simulation should not necessarily be able to capture the observations. Laprise points out that the statistical signal is reduced for a multi-decadal trend such as the one we analyzed in comparison with mean climatology and cites two studies showing that for particular climate parameters it can take any years for a signal to be discerned over internal variability. He states that The results of theexperiment as designed were strongly influenced by the presence of internal variability and sampling errors,which masked the rather small climate changes that may have occurred as a consequence of changes inforcing during the period considered. While Laprise discusses statistics in general terms at some length, for the actual climate trends examined in our study, he offers no evidence that the forced signal was smallcompared with internal variability. The two studies he cites [de Ela et al., 2013; Maraun, 2013] do not provide convincing evidence as they concern climate variables averaged over different times and areas. One in fact examines extreme precipitation events, which by definition are rare and thus have a lower significance level. We accept the general point that it is important to consider internal variability, and as noted in our paper we agree that an ensemble of simulations is in principle an optimal, though computationally expensive, approach. While we did not present the statistical significance of the observations in our original paper, we have now evaluated those for the regional temperature trends used in our study to evaluate the added value of WRF and thus can analyze data as to the magnitude of the trends with respect to internal variability.

climate↗
DOE OSTI2022

A Spatiotemporal-Aware Weighting Scheme for Improving Climate Model Ensemble Predictions

Multimodel ensembling has been widely used to improve climate model predictions, and the improvement strongly depends on the ensembling scheme. In this work, we propose a Bayesian neural network (BNN) ensembling method, which combines climate models within a Bayesian model averaging framework, to improve the predictive capability of model ensembles. Our proposed BNN approach calculates spatiotemporally varying model weights and biases by leveraging individual models' simulation skill, calibrates the ensemble prediction against observations by considering observation data uncertainty, and quantifies epistemic uncertainty when extrapolating to new conditions. More importantly, the BNN method provides interpretability about which climate model contributes more to the ensemble prediction at which locations and times. Thus, beyond its predictive capability, the method also brings insights and understanding of the models to guide further model and data development. In this study, we design experiments using an ensemble of CMIP6 climate model simulations to illustrate the BNN ensembling method's capability with respect to prediction accuracy, interpretability, and uncertainty quantification (UQ). We demonstrate that BNN can correctly assign larger weights to the regions and seasons where the individual model fits the observation better. Moreover, its offered interpretability is consistent with our understanding of localized climate model performance. Additionally, BNN shows an increasing uncertainty when the prediction is farther away from the period with constrained data, which appropriately reflects our trustworthiness of the models in the changing climate.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Realistic simulations of spin squeezing and cooperative coupling effects in large ensembles of interacting two-level systems

We describe an efficient numerical method for simulating the dynamics of interacting spin ensembles in the presence of dephasing and decay. The method builds on the discrete truncated Wigner approximation for isolated systems, which combines the mean-field dynamics of a spin ensemble with a Monte Carlo sampling of discrete initial spin values to account for quantum correlations. Here we show how this approach can be generalized for dissipative spin systems by replacing the deterministic mean-field evolution by a stochastic process, which describes the decay of coherences and populations while preserving the length of each spin. We demonstrate the application of this technique for simulating nonclassical spin-squeezing effects or the dynamics and steady states of cavity QED models with 10 5 interacting two-level systems. This opens up the possibility to perform accurate real-scale simulations of a diverse range of experiments in quantum optics or with solid-state spin ensembles under realistic laboratory conditions.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2022

Hot and dense matter equation of state probability distributions for astrophysical simulations

We add an ensemble of nuclei to the equation of state for homogeneous nucleonic matter to generate a new set of models suitable for astrophysical simulations of core-collapse supernovae and neutron star mergers. We implement empirical constraints from (i) nuclear mass measurements, (ii) proton-proton scattering phase shifts, and (iii) neutron star observations. Our model is also guided by microscopic many-body theory calculations based on realistic nuclear forces, including the zero-temperature neutron matter equation of state from quantum Monte Carlo simulations and thermal contributions to the free energy from finite-temperature many-body perturbation theory. We ensure that the parameters of our model can be varied while preserving thermodynamic consistency and the connection to experimental or observational data, thus providing a probability distribution of the astrophysical hot and dense matter equation of state. Furthermore, we compare our results with those obtained from other available equations of state. While our probability distributions indeed represent a large number of possible equations of state, we cannot yet claim to have fully explored all of the uncertainties, especially with regard to the structure of nuclei in the hot and dense medium.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
NASA NTRS2017

On the Dependence of Cloud Feedbacks on Physical Parameterizations in WRF Aquaplanet Simulations

We investigate the effects of physical parameterizations on cloud feedback uncertainty in response to climate change. For this purpose, we construct an ensemble of eight aquaplanet simulations using the Weather Research and Forecasting (WRF) model. In each WRF‐derived simulation, we replace only one parameterization at a time while all other parameters remain identical. By doing so, we aim to (i) reproduce cloud feedback uncertainty from state‐of‐the‐art climate models and (ii) understand how parametrizations impact cloud feedbacks. Our results demonstrate that this ensemble of WRF simulations, which differ only in physical parameterizations, replicates the range of cloud feedback uncertainty found in state‐of‐the‐art climate models. We show that microphysics and convective parameterizations govern the magnitude and sign of cloud feedbacks, mostly due to tropical low‐level clouds in subsidence regimes. Finally, this study highlights the advantages of using WRF to analyze cloud feedback mechanisms owing to its plug‐and‐play parameterization capability.

Cesana, Gregory↗
NASA NTRS1991

A multicomputer simulation of the Galileo spacecraft command and data subsystem

A detailed simulation of the command and data subsystem of the Galileo spacecraft on a distributed memory multicomputer is described. The simulation is based on an ensemble of Inmos Transputers for simulating, to the bit level, the execution of instruction sequences for the six RCA 1802 microcomputers and the intricate bus traffic between them and other components of the spacecraft. Expressions were developed to estimate the performance of the simulator on a distributed system given the processor clock speed, memory access time, and communication characteristics.

Zipse, John E.↗
NASA NTRS2002

On Simulating the Mid-western-us Drought of 1988 with a GCM

The primary cause of the midwestern North American drought in the summer of 1988 has been identified to be the La Nina SST anomalies. Yet with the SST anomalies prescribed, this drought has not been simulated satisfactorily by any general circulation model. Seven simulation-experiments, each containing an ensemble of 4-sets of simulations, were conducted with the GEOS GCM for both 1987 and 1988. All simulations started from January 1 and continued through the end of August. In the first baseline case, Case 1, only the SST anomalies and some vegetation parameters were prescribed, while everything else (such as soil moisture, snow-cover, and clouds) was interactive. The GCM did produce some of the circulation features of a drought over North America, but they could only be identified on the planetary scales. The 1988 minus 1987 precipitation differences show that the GCM was successful in simulating reduced precipitation in the mid-west, but the accompanying circulation anomalies were not well simulated, leading one to infer that the GCM has simulated the drought for the wrong reason. To isolate the causes for this unremarkable circulation, analyzed winds and soil moisture were prescribed in Case 2 and Case 3 as continuous updates by direct replacement of the GCM-predicted fields. These cases show that a large number of simulation biases emanate from wind biases that are carried into the North American region from surroundings regions. Inclusion of soil moisture also helps to ameliorate the strong feedback, perhaps even stronger than that of the real atmosphere, between soil moisture and precipitation. Case 2 simulated one type of surface temperature anomaly pattern, whereas Case 3 with the prescribed soil moisture produced another.

Sud, Y. C.↗
NASA NTRS2004

Estimating the instability of a composite clock

A composite clock created from a local clock ensemble is known by its time offsets from the ensemble clocks. By a geometrical argument, estimate for the instability of the composite clock are calculated from the instabilities of the ensemble clocks, individually and against the composite clock. The method is illustrated by examples using simulated and real ensembles.

timescale↗
NASA NTRS1992

Role of a cumulus parameterization scheme in simulating atmospheric circulation and rainfall in the nine-layer Goddard Laboratory for Atmospheres General Circulation Model

The influence of a cumulus convection scheme on the simulated atmospheric circulation and hydrologic cycle is investigated by means of a coarse version of the GCM. Two sets of integrations, each containing an ensemble of three summer simulations, were produced. The ensemble sets of control and experiment simulations are compared and differentially analyzed to determine the influence of a cumulus convection scheme on the simulated circulation and hydrologic cycle. The results show that cumulus parameterization has a very significant influence on the simulation circulation and precipitation. The upper-level condensation heating over the ITCZ is much smaller for the experiment simulations as compared to the control simulations; correspondingly, the Hadley and Walker cells for the control simulations are also weaker and are accompanied by a weaker Ferrel cell in the Southern Hemisphere. Overall, the difference fields show that experiment simulations (without cumulus convection) produce a cooler and less energetic atmosphere.

Sud, Y. C.↗
NASA NTRS2012

A Comparison of Perturbed Initial Conditions and Multiphysics Ensembles in a Severe Weather Episode in Spain

Ensembles of numerical model forecasts are of interest to operational early warning forecasters as the spread of the ensemble provides an indication of the uncertainty of the alerts, and the mean value is deemed to outperform the forecasts of the individual models. This paper explores two ensembles on a severe weather episode in Spain, aiming to ascertain the relative usefulness of each one. One ensemble uses sensible choices of physical parameterizations (precipitation microphysics, land surface physics, and cumulus physics) while the other follows a perturbed initial conditions approach. The results show that, depending on the parameterizations, large differences can be expected in terms of storm location, spatial structure of the precipitation field, and rain intensity. It is also found that the spread of the perturbed initial conditions ensemble is smaller than the dispersion due to physical parameterizations. This confirms that in severe weather situations operational forecasts should address moist physics deficiencies to realize the full benefits of the ensemble approach, in addition to optimizing initial conditions. The results also provide insights into differences in simulations arising from ensembles of weather models using several combinations of different physical parameterizations.

severe weather↗
NASA NTRS2016

An Assessment of Multimodel Simulations for the Variability of Western North Pacific Tropical Cyclones and Its Association with ENSO

An assessment of simulations of the interannual variability of tropical cyclones (TCs) over the western North Pacific (WNP) and its association with El Niño-Southern Oscillation (ENSO), as well as a subsequent diagnosis for possible causes of model biases generated from simulated large-scale climate conditions, are documented in the paper. The model experiments are carried out by the Hurricane Work Group under the U.S. Climate Variability and Predictability Research Program (CLIVAR) using five global climate models (GCMs) with a total of 16 ensemble members forced by the observed sea surface temperature and spanning the 28-yr period from 1982 to 2009. The results show GISS and GFDL model ensemble means best simulate the interannual variability of TCs, and the multimodel ensemble mean (MME) follows. Also, the MME has the closest climate mean annual number of WNP TCs and the smallest root-mean-square error to the observation. Most GCMs can simulate the interannual variability of WNP TCs well, with stronger TC activities during two types of El Niño-namely, eastern Pacific (EP) and central Pacific (CP) El Niño-and weaker activity during La Niña. However, none of the models capture the differences in TC activity between EP and CP El Niño as are shown in observations. The inability of models to distinguish the differences in TC activities between the two types of El Niño events may be due to the bias of the models in response to the shift of tropical heating associated with CP El Niño.

climate models↗
NASA NTRS1992

Infrared, microwave, and spaceborne radar simulations of a deep convective system using a 3-D cloud ensemble method

A 3D cloud model is used to simulate the storm structure, and the results are linked to microwave and infrared radiative transfer models for simulation of aircraft observations. Spaceborne radar data are also simulated along the aircraft flight track. The cloud and radiative model simulations are studied and compared with aircraft observations. The initial results indicate that the 3D cloud model is capable of simulating the major features of observed storm systems when given a representative atmospheric sounding to initialize the convective systems. The simulations of infrared and microwave radiances provide reasonably good comparisons with the observations.

Yeh, H.-Y. M.↗
DOE OSTI2024

The Influence of ENSO Diversity on Future Atlantic Tropical Cyclone Activity

El Niño–Southern Oscillation (ENSO) influences seasonal Atlantic tropical cyclone (TC) activity by impacting environmental conditions important for TC genesis. However, the influence of future climate change on the teleconnection between ENSO and Atlantic TCs is uncertain, as climate change is expected to impact both ENSO and the mean climate state. We used the Weather Research and Forecasting Model on a tropical channel domain to simulate 5-member ensembles of Atlantic TC seasons in historical and future climates under different ENSO conditions. Experiments were forced with idealized sea surface temperature configurations based on the Community Earth System Model (CESM) Large Ensemble representing: a monthly varying climatology, eastern Pacific El Niño, central Pacific El Niño, and La Niña. The historical simulations produced fewer Atlantic TCs during eastern Pacific El Niño compared to central Pacific El Niño, consistent with observations and other modeling studies. For each ENSO state, the future simulations produced a similar teleconnection with Atlantic TCs as in the historical simulations. Specifically, La Niña continues to enhance Atlantic TC activity, and El Niño continues to suppress Atlantic TCs, with greater suppression during eastern Pacific El Niño compared to central Pacific El Niño. In addition, we found a decrease in the Atlantic TC frequency in the future relative to historical regardless of ENSO state, which was associated with a future increase in northern tropical Atlantic vertical wind shear and a future decrease in the zonal tropical Pacific sea surface temperature (SST) gradient, corresponding to a more El Niño–like mean climate state. Our results indicate that ENSO will remain useful for seasonal Atlantic TC prediction in the future.

54 ENVIRONMENTAL SCIENCES↗