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At least 289 records · Page 16

The New Face of Data Accessibility

Management of medical and research data at NASA's Johnson Space Center has been addressed with two separate, independent systems: the Lifetime Surveillance of Astronaut Health (formerly, The Longitudinal Study of Astronaut Health) (LSAH) and the Life Sciences Data Archive (LSDA). Project management for these has been autonomous with little or no cross-over of goals, objectives or strategy. The result has been limited debate and discussion regarding how contents from one repository might impact or guide the direction of the other. It is decidedly more efficient to use existing data and information than to re-generate them. Ensuring that both clinical and research data / information are accessible for review is a central concept to the decision to unify these repositories. In the past, research data from flight and ground analogs has been held in the LSDA and medical data held in the Electronic Medical Record or in console flight surgeon logs and records. There was little cross-pollination between medical and research findings and, as a result, applicable research was not being fully incorporated into clinical, in-flight practice. Conversely, findings by the console surgeon were not being picked up by the research community. The desired life cycle for risk mitigation was not being fully realized. The goal of unifying these repositories and processes is to provide a closely knit approach to handling medical and research data, which will not only engender discussion and debate but will also ensure that both categories of data and information are used to enhance the use of medical and research data to reduce risk and promote the understanding of space physiology, countermeasures and other mitigation strategies

Fitts, Mary A.↗

Maximizing Spaceflight Biological Data with Omics Analytics: The NASA GeneLab Database

NASA’s GeneLab includes an open-access repository of some 250+ omics datasets generated by biological experiments relevant to spaceflight including simulated cosmic radiation and microgravity. In order to maximize the intelligibility of these data, particularly for users with limited bioinformatics background, GeneLab has become a knowledgebase platform converting raw genetic and proteomic signatures found in flight samples into biological and physiological meanings. A large community of more than 100 scientists has rallied behind GeneLab and organized into four Analysis Working Groups (AWGs: Animal, Plant, Microbe, and Multi-Omics). Together, the AWGs have gained scientific recognition worldwide by establishing a consortium in charge of adopting new complex standards for data analysis workflows and omics sample processing in a rapidly evolving field. We will demonstrate the usage of the repository with smart search capability, an online controlled-access toolshed "Galaxy" to process user data with vetted standard workflows, a workspace for data sharing and a data submission portal with ontology control for better metadata curation. The GeneLab visualization portal will also be demonstrated, showing how anyone without formal training in bioinformatics can now browse the space biology omics data to discover new biology and potential solutions to improve life in space.

Sylvain Vincent Costes↗

Experiment design and operations

The objectives, design, and field operations of the First ISLSCP Field Experiment (FIFE) are described. The simultaneous acquisition of satellite, atmosphere, and surface data, and the understanding of the processes governing surface energy and mass exchange and how these are manifested in satellite-resolution radiometric data are identified as the specific objectives of the field-phase experiment. The central issues concerning the design of the field experiment are considered: the size of the site, the duration of the experiment, and the location of the site; it is noted that the Konza Prairie National Reserve was selected as the focus of the study. Field operations in 1987 and 1989 are discussed, and it is pointed out that a data set is available now from a single combined repository to all FIFE investigators, and that scientists can test models and algorithms on scales consistent with satellite observations and with enough supporting data on finer scales.

Sellers, P. J.↗

pyQuARC: Preparing for Full Release

Metadata holds the contextual information about data and is the underlying structure for many data search portals. High quality metadata optimizes search results, allowing users to quickly retrieve the data they need. With the abundant volume and diversity of Earth observation datasets, data discovery and metadata quality are critical for end users. The Common Metadata Repository (CMR), for example, currently hosts metadata for over 9,000 Earth observation data products archived across 12 NASA Distributed Active Archive Centers (DAACs). The Analysis and Review of CMR (ARC) Team, located at Marshall Space Flight Center, assesses the completeness, correctness, and consistency of these metadata records to ensure they are accessible, usable, and discoverable. In 2021, ARC began developing pyQuARC, an open source library for Earth Observation Metadata Quality Assessment to automate this effort. The tool uses ARC’s existing metadata quality framework to provide prioritized recommendations for metadata improvement. During initial testing, pyQuARC automatically identified 58% of metadata findings when compared with a sample of manually reviewed records. Using the results from initial testing, this presentation will focus on recent advancements and improvements of the tool as the ARC team prepares for pyQuARC’s full release. It will also demonstrate pyQuARC's enrichment value, not only for the ARC team, but the broader EOSDIS metadata community as well.

Essence Raphael↗

Improving Earth Science Dataset Search with Publication

The NASA Goddard Earth Sciences Data and Information Services Center (GESDISC) archives a large number of Earth observational datasets. Thousands of the publications are created each year based on these datasets. The content of these publications can be used for discovery of the datasets based on the characteristics of applicational research. We leverage the content of these publications to retrieve the information about phenomena and domains where measurements from the datasets were utilized through linking these publications and dataset in Knowledge Graph. We retrieve phenomena and domain information using SWEET ontology and produce the set of keywords that are linked to the datasets. Further, we evaluate this link strength according to the frequency of dataset usage in the papers mentioning these keywords. We demonstrate how this linkage can improve dataset search by comparing the search results obtained from Common Metadata Repository (CMR) search and the publications based data.

Kristina Stoyanova↗

GeneLab: A Systems Biology Platform for Omics Analysis

NASA GeneLab is an open-access repository for omics datasets generated by biological experiments conducted in space or experiments relevant to spaceflight (e.g. simulated cosmic radiation, simulated microgravity, bed rest studies). The GeneLab Data Systems (GLDS) version 4.0 will be available on October 1st 2019, and will provide the latest in terms of professional state-of-the-art bioinformatics platform for the space biology and radiation community to upload their data into an omics data commons, to process their data with vetted standard workflows and to compare to existing analyses. Started in 2015 as a repository designed to archive omics data from space experiments, GeneLab has expanded its scope to all ionizing radiation omics experiments conducted on the ground and has put considerable effort in providing carefully characterized radiation metadata on all dataset. GeneLab is also providing processed data derived from the raw data covering a large spectrum of omics (genome, epigenome, transcriptome, epitranscriptome, proteome, metabolome) to help users explore important questions: 1) Which genes or proteins are expressed differently in space for various living organisms? 2) What specific DNA mutations or epigenetic changes happen in space or after exposure to ionizing radiation? and 3) How does genetics affect these responses? Processed data available on GeneLab are derived by standard data analysis workflows vetted by hundreds of scientists who volunteered to join one of the four GeneLab Analysis Working Groups (Animal AWG, Plant AWG, Microbe AWG, Multi-Omics AWG). In this presentation, we will discuss how to bridge the gap between irradiation studies performed on earth and biological experiments conducted in space since the early 1990's. We will discuss how radiation dosimetry was estimated for datasets derived from samples collected during the Space Shuttle era or on the International Space Station. Finally, we will address future strategies regarding dose monitoring in future missions into space, inter-agency efforts to unify data under one umbrella, and knowledge dissemination across the radiation research community and the space biology community.

open-science↗

Optical archiving for scientific data

Write-once-read-many (WORM) optical disk technology is now practical for use as (1) a near online storage media, (2) long-term storage in a passive repository, and (3) under some circumstances, transporting from and to data generators and data users at remote sites. Optical technology provides several significant advantages over magnetic tapes as a data storage media because it is more compact, provides random access, has a longer lifetime, at least 30 years, and is less sensitive to environmental factors such as temperature and humidity. Two major archival projects using optical technology underway are discussed: the Coastal Zone Color Scanner data and the Dynamics Explorer data. Both projects have used the software for optical archive and retrieval (SOAR) to transfer data in a volume format that can be read transparently by VAX/VMS. Through the use of this software technique, (1) data generators and data users do not have to rewrite extant software and (2) the VAX/VMS Files-11 volume format is in wide use, so it can serve as an interim standard and will be accessible in the long-term.

Lowrey, Barbara E.↗

Human Specimen Repository: Sample Collection for the Future [#133-000445]

In early 2014, an executive memo was released directing the improvement of the management of and access to scientific collections funded by government resources. In the spirit of this memo, NASA’s Human Research Program (HRP) funded a project to review existing residual samples in long-term storage for viability, identification, and scientific significance. These samples were to be collected in a centralized location and a detailed inventory was to be conducted to create the Human Sample Repository (HSR). HSR would work to review data from over 27,000 samples, from flight research projects dating back to 1998. The samples themselves would be reviewed, re-labeled, and organized into easy to retrieve, long-term storage. In addition to the older residual samples, HSR would expand to include pristine samples from all consenting crew who have flown on International Space Station (ISS) missions. All samples inventoried and managed by HSR are intended for the same purpose; to support future research projects which will utilize advanced technologies or techniques, by providing one-of-a-kind sample collections that can not be replicated. With this mission in mind, HSR will continue to collect residual samples from HRP funded projects and pristine samples from consenting crew, to further build this unique collection and increase the diversity of flight samples available to the scientific community.

Human Specimen Repository↗

Overview of the Translational Radiation Research and Countermeasures (TRRaC) Project in Space Radiation

The Translational Radiation Research and Countermeasures (TRRaC) Project was initiated by the Space Radiation (SR) Element within NASA’s Human Research Program (HRP) to support the SR mission to understand and characterize the space radiation environment, understand and quantify radiation-associated risks, and mitigate the impacts of radiation-induced adverse health outcomes to enable human space exploration. TRRaC’s mission is to translate radiation research results from experimental studies and epidemiological data to humans and astronauts using bioinformatics and computational modeling. TRRaC will leverage existing datasets such as those available from NASA’s GeneLab repository and human medical radiation exposure registries, along with relevant data generated from ground-based research at molecular, cellular, tissue, and system levels, to: (1) refine the radiation dose rate effectiveness factor, (2) characterize radiation quality effects to improve estimates of the risk of exposure-induced death (REID) from space-relevant radiation exposures, and (3) identify pathways and biomarkers for cancer, cardiovascular disease, and central nervous system changes that are impacted by space radiation exposure.

Parastou Eslami↗

Design guide for high pressure oxygen systems

A repository for critical and important detailed design data and information, hitherto unpublished, along with significant data on oxygen reactivity phenomena with metallic and nonmetallic materials in moderate to very high pressure environments is documented. This data and information provide a ready and easy to use reference for the guidance of designers of propulsion, power, and life support systems for use in space flight. The document is also applicable to designs for industrial and civilian uses of high pressure oxygen systems. The information presented herein are derived from data and design practices involving oxygen usage at pressures ranging from about 20 psia to 8000 psia equal with thermal conditions ranging from room temperatures up to 500 F.

Bond, A. C.↗

An Overview of the NASA Aerospace Flight Battery Systems Program

The NASA Aerospace Flight Battery Systems Program is an agency-wide effort aimed at ensuring the quality, safety, reliability and performance of flight battery systems for NASA applications. The program provides for the validation of primary and secondary cell and battery level technology advances to ensure their availability and readiness for use in NASA missions. It serves to bridge the gap between the development of technology advances and the realization and incorporation of these advances into mission applications. The program is led by the Glenn Research Center and involves funded task activities at each of the NASA mission centers and JPL. The overall products are safe, reliable, high quality batteries for mission applications. The products are defined along three product lines: 1. Battery Systems Technology - Elements of this task area cover the systems aspects of battery operation and generally apply across chemistries. This includes the development of guidelines documents, the establishment and maintenance of a central battery database that serves a central repository for battery characterization and verification test data from tests performed under the support of this program, the NASA Battery Workshop, and general test facility support. 2. Secondary Battery Technology - l h s task area focuses on the validation of battery technology for nickel-cadmium, nickel-hydrogen, nickel-metal-hydride and lithium-ion secondary battery systems. Standardized test regimes are used to validate the quality of a cell lot or cell design for flight applications. In this area, efforts are now concentrated on the validation and verification of lithium-ion battery technology for aerospace applications. 3. Primary Battery Technology - The safety and reliability aspects for primary lithium battery systems that are used in manned operations on the Shuttle and International Space Station are addressed in the primary battery technology task area. An overview of the task areas supported under this program will be presented.

Manzo, Michelle A.↗

NASA Stennis Space Center Integrated System Health Management Test Bed and Development Capabilities

Integrated System Health Management (ISHM) is a capability that focuses on determining the condition (health) of every element in a complex System (detect anomalies, diagnose causes, prognosis of future anomalies), and provide data, information, and knowledge (DIaK)-not just data-to control systems for safe and effective operation. This capability is currently done by large teams of people, primarily from ground, but needs to be embedded on-board systems to a higher degree to enable NASA's new Exploration Mission (long term travel and stay in space), while increasing safety and decreasing life cycle costs of spacecraft (vehicles; platforms; bases or outposts; and ground test, launch, and processing operations). The topics related to this capability include: 1) ISHM Related News Articles; 2) ISHM Vision For Exploration; 3) Layers Representing How ISHM is Currently Performed; 4) ISHM Testbeds & Prototypes at NASA SSC; 5) ISHM Functional Capability Level (FCL); 6) ISHM Functional Capability Level (FCL) and Technology Readiness Level (TRL); 7) Core Elements: Capabilities Needed; 8) Core Elements; 9) Open Systems Architecture for Condition-Based Maintenance (OSA-CBM); 10) Core Elements: Architecture, taxonomy, and ontology (ATO) for DIaK management; 11) Core Elements: ATO for DIaK Management; 12) ISHM Architecture Physical Implementation; 13) Core Elements: Standards; 14) Systematic Implementation; 15) Sketch of Work Phasing; 16) Interrelationship Between Traditional Avionics Systems, Time Critical ISHM and Advanced ISHM; 17) Testbeds and On-Board ISHM; 18) Testbed Requirements: RETS AND ISS; 19) Sustainable Development and Validation Process; 20) Development of on-board ISHM; 21) Taxonomy/Ontology of Object Oriented Implementation; 22) ISHM Capability on the E1 Test Stand Hydraulic System; 23) Define Relationships to Embed Intelligence; 24) Intelligent Elements Physical and Virtual; 25) ISHM Testbeds and Prototypes at SSC Current Implementations; 26) Trailer-Mounted RETS; 27) Modeling and Simulation; 28) Summary ISHM Testbed Environments; 29) Data Mining - ARC; 30) Transitioning ISHM to Support NASA Missions; 31) Feature Detection Routines; 32) Sample Features Detected in SSC Test Stand Data; and 33) Health Assessment Database (DIaK Repository).

Figueroa, Fernando↗

CSW Best Practices

During the development of the CMR (Common Metadata Repository) (CMR) for the Earth Observing System Data and Information System (EOSDIS), CSW (Catalog Service for the Web) a number of best practices came to light. Given that the ESIP (Earth Science Information Partners) Discovery Cluster is committed to interoperability and standards in earth data discovery this seemed like a convenient moment to provide Best Practices to the organization in the same way we did for OpenSearch for this widely-used standard.

CMR↗

Visual System for Browsing, Analysis, and Retrieval of Data (ViSBARD)

ViSBARD software provides a way of visualizing multiple vector and scalar quantities as measured by many spacecraft at once. The data are displayed three-dimensionally along the orbits that may be shown either as connected lines or as points. The data display allows the rapid determination of vector configurations, correlations among many measurements at multiple points, and global relationships. Things such as vector field rotations and dozens of simultaneous variables are very difficult to see in (complementary) panel plot representations. The current and next generations of space physics missions require a means to display from tens to hundreds of time series of data in such a way that the mind can comprehend them for the purposes of browsing data, retrieving them in directly useful form, and analyzing them in a global context. Sets of many spacecraft, each carrying many instruments yielding nearly continuous data at high time resolution, have become one of the most effective ways to make progress in understanding the extended, ionized (plasma) atmosphere of the Earth and the Sun. For large collections of data to be effective, they must be extremely readily accessible, with simple, comprehensible overviews of what is available. ViSBARD provides a means to answer these concerns. The ViSBARD package also acts as a remote repository browser; an interface to a Virtual Observatory. Therefore, data can be pulled directly into the application, as opposed to searching for it and downloading separately.

Roberts, Aaron↗

Development of a vibroacoustic data base management and prediction system for payloads

A data base management and prediction system called vibroacoustic payload environment prediction system (VAPEPS) was developed to serve as a repository for shuttle or extendable booster payload component flight and ground test data. This system is to be made available to the aerospace community for multiple uses including that of establishing the vibroacoustic environment for new payload components. The VAPEPS data includes that spectral information normally processed from vibration and acoustic measurements (e.g., power spectra, sound pressure level spectra, etc.). Results of development to provide this capability by NASA Goddard Space Flight Center and Lockheed Missiles and Space Company are described.

On, F. J.↗

Organizing Diverse, Distributed Project Information

SemanticOrganizer is a software application designed to organize and integrate information generated within a distributed organization or as part of a project that involves multiple, geographically dispersed collaborators. SemanticOrganizer incorporates the capabilities of database storage, document sharing, hypermedia navigation, and semantic-interlinking into a system that can be customized to satisfy the specific information-management needs of different user communities. The program provides a centralized repository of information that is both secure and accessible to project collaborators via the World Wide Web. SemanticOrganizer's repository can be used to collect diverse information (including forms, documents, notes, data, spreadsheets, images, and sounds) from computers at collaborators work sites. The program organizes the information using a unique network-structured conceptual framework, wherein each node represents a data record that contains not only the original information but also metadata (in effect, standardized data that characterize the information). Links among nodes express semantic relationships among the data records. The program features a Web interface through which users enter, interlink, and/or search for information in the repository. By use of this repository, the collaborators have immediate access to the most recent project information, as well as to archived information. A key advantage to SemanticOrganizer is its ability to interlink information together in a natural fashion using customized terminology and concepts that are familiar to a user community.

Keller, Richard M.↗

Advanced Query and Data Mining Capabilities for MaROS

The Mars Relay Operational Service (MaROS) comprises a number of tools to coordinate, plan, and visualize various aspects of the Mars Relay network. These levels include a Web-based user interface, a back-end "ReSTlet" built in Java, and databases that store the data as it is received from the network. As part of MaROS, the innovators have developed and implemented a feature set that operates on several levels of the software architecture. This new feature is an advanced querying capability through either the Web-based user interface, or through a back-end REST interface to access all of the data gathered from the network. This software is not meant to replace the REST interface, but to augment and expand the range of available data. The current REST interface provides specific data that is used by the MaROS Web application to display and visualize the information; however, the returned information from the REST interface has typically been pre-processed to return only a subset of the entire information within the repository, particularly only the information that is of interest to the GUI (graphical user interface). The new, advanced query and data mining capabilities allow users to retrieve the raw data and/or to perform their own data processing. The query language used to access the repository is a restricted subset of the structured query language (SQL) that can be built safely from the Web user interface, or entered as freeform SQL by a user. The results are returned in a CSV (Comma Separated Values) format for easy exporting to third party tools and applications that can be used for data mining or user-defined visualization and interpretation. This is the first time that a service is capable of providing access to all cross-project relay data from a single Web resource. Because MaROS contains the data for a variety of missions from the Mars network, which span both NASA and ESA, the software also establishes an access control list (ACL) on each data record in the database repository to enforce user access permissions through a multilayered approach.

Wang, Paul↗

QuARC: Development of a Service to Enable FAIR-er Metadata

The ARC Project: The ARC Team located at NASA’s Marshall Space Flight Center conducts quality assessments of metadata records that catalog NASA’s collection of over 9,000 Earth observation data products, stored in a centralized database called the Common Metadata Repository (CMR). The ARC Team has developed a metadata quality assessment framework to evaluate metadata completeness, correctness, and consistency with the goal of making NASA’s data products more discoverable, accessible, and usable. ARC = Analysis and Review of the CMR

Earth Science Informatics↗