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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 289 records · Page 16
All sourcesNASA NTRSDOE OSTI
DOE OSTI2014

Energy Performance Testing of Asetek's RackCDU System at NREL's High Performance Computing Data Center

In this study, we report on the first tests of Asetek's RackCDU direct-to-chip liquid cooling system for servers at NREL's ESIF data center. The system was simple to install on the existing servers and integrated directly into the data center's existing hydronics system. The focus of this study was to explore the total cooling energy savings and potential for waste-heat recovery of this warm-water liquid cooling system. RackCDU captured up to 64% of server heat into the liquid stream at an outlet temperature of 89 degrees F, and 48% at outlet temperatures approaching 100 degrees F. This system was designed to capture heat from the CPUs only, indicating a potential for increased heat capture if memory cooling was included. Reduced temperatures inside the servers caused all fans to reduce power to the lowest possible BIOS setting, indicating further energy savings potential if additional fan control is included. Preliminary studies manually reducing fan speed (and even removing fans) validated this potential savings but could not be optimized for these working servers. The Asetek direct-to-chip liquid cooling system has been in operation with users for 16 months with no necessary maintenance and no leaks.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2025

Artificial Intelligence for Data Center Operations (AIOps): Cooperative Research and Development (Final Report)

High performance computing data centers will increasingly need to rely on automation to keep pace with exascale growth in compute capability and to manage and optimize the data center environment and facility resources. Artificial intelligence and machine learning approaches provide the means to improve HPC data center operational efficiency, by learning historical trends and training models to operate on real-time data collected from both IT and facilities sources. NREL has developed methods of real-time collection, aggregation and streaming of these data in the ESIF HPC Data Center and has collected a significant dataset of relevant metrics across computer systems, racks, environmental, building and utility sources for research into various predictive analytics problems. HPE's Advanced Technology Group (ATG) is doing comprehensive research into exascale monitoring and management for High Performance Computing (HPC) systems (hereinafter HPE's Data Monitoring/ Management Technology). NREL and HPE will collaborate to add Artificial Intelligence (AI) to NREL's real-time data collection/ aggregation/ streaming system and HPE's Data Monitoring/ Management System, with the goal of improving the operational efficiency of NREL's Energy Systems Integration Facility (ESIF) HPC Data Center through data analytics on both historical and real-time data from IT systems and facilities operations. This collaboration will consist of efforts in Data Management, Data Analytics, and AI/ML Optimization for both manual and autonomous intervention in data center operations. This will be a multi-year, multi-staged effort with a goal towards building capabilities for an Advanced Smart Facility, and demonstration of these techniques in the NREL ESIF HPC Data Center.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2024

Ginkgo - A math library designed to accelerate Exascale Computing Project science applications

Large-scale simulations require efficient computation across the entire computing hierarchy. A challenge of the Exascale Computing Project (ECP) was to reconcile highly heterogeneous hardware with the myriad of applications that were required to run on these supercomputers. Mathematical software forms the backbone of almost all scientific applications, providing efficient abstractions and operations that are crucial to harness the performance of computing systems. Ginkgo is one such mathematical software library, nurtured by ECP, providing high-performance, user-friendly, and performance portable interfaces for applications in ECP and beyond. In this paper, we elaborate on Ginkgo’s philosophy of high-performance software that is sustainable, reproducible, and easy to use. We showcase the wide feature set of solvers and preconditioners available in Ginkgo and the central concepts involved in their design. We elaborate on four different ECP software integrations: MFEM, PeleLM + SUNDIALS, XGC, and ExaSGD that use Ginkgo to accelerate their science runs. Performance studies of different problems from these applications highlight the effectiveness of Ginkgo and the benefits incurred by these ECP applications.

Cojean, Terry↗
DOE OSTI2018

Opal: A Centralized Memory Manager for Investigating Disaggregated Memory Systems

Many modern applications have memory footprints that are increasingly large, driving system memory capacities higher and higher. Moreover, these systems are often organized where the bulk of the memory is collocated with the compute capability, which necessitates the need for message passing APIs to facilitate information sharing between compute nodes. Due to the diversity of applications that must run on High-Performance Computing (HPC) systems, the memory utilization can fluctuate wildly from one application to another. And, because memory is located in the node, maintenance can become problematic because each node must be taken offline and upgraded individually. To address these issues, vendors are exploring disaggregated, memory-centric, systems. In this type of organization, there are discrete nodes, reserved solely for memory, which are shared across many compute nodes. Due to their capacity, low-power, and non-volatility, Non-Volatile Memories (NVMs) are ideal candidates for these memory nodes. This report discusses a new component for the Structural Simulation Toolkit (SST), Opal, that can be used to study the impact of using NVMs in a disaggregated system in terms of performance, security, and memory management. This page intentionally left blank.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2019

Holistic Approaches to HPC Power and Workflow Management

Constraints on power consumption are having pervasive effects on high-performance computing (HPC) systems, the facilities in which they are housed, and the application codes themselves. Whether these constraints are driven by physical limits on available power within a facility, are due to utility demand response, result from opportunities to reduce utility costs, or are imposed by sponsoring agencies, power management must now be added to the traditional goals of application and algorithm correctness, scalability, and performance. The specifics of these power constraints are likely to vary from site to site, and optimal strategies for managing power will vary. In this paper, we present the results of implementing several strategies for managing HPC system power and quantify the impact of these power reductions on application performance. These can be added to the suite of extant options that can be used to manage power and workflow on HPC systems.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2019

Holistic Approaches to HPC Power & Workflow Management: Preprint

Constraints on power consumption are having pervasive effects on high-performance computing (HPC) systems, the facilities in which they are housed, and the application codes themselves. Whether these constraints are driven by physical limits on available power within a facility, are due to utility demand response, result from opportunities to reduce utility costs, or are imposed by sponsoring agencies, power management must now be added to the traditional goals of application and algorithm correctness, scalability, and performance. The specifics of these power constraints are likely to vary from site to site, and optimal strategies for managing power will vary. In this paper, we present the results of implementing several strategies for managing HPC system power and quantify the impact of these power reductions on application performance. These can be added to the suite of extant options that can be used to manage power and workflow on HPC systems.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2020

Automated Integration of Continental-Scale Observations in Near-Real Time for Simulation and Analysis of Biosphere–Atmosphere Interactions

The National Ecological Observatory Network (NEON) is a continental-scale observatory with sites across the US collecting standardized ecological observations that will operate for multiple decades. To maximize the utility of NEON data, we envision edge computing systems that gather, calibrate, aggregate, and ingest measurements in an integrated fashion. Edge systems will employ machine learning methods to cross-calibrate, gap-fill and provision data in near-real time to the NEON Data Portal and to High Performance Computing (HPC) systems, running ensembles of Earth system models (ESMs) that assimilate the data. For the first time gridded EC data products and response functions promise to offset pervasive observational biases through evaluating, benchmarking, optimizing parameters, and training new machine learning parameterizations within ESMs all at the same model-grid scale. Leveraging open-source software for EC data analysis, we are already building software infrastructure for integration of near-real time data streams into the International Land Model Benchmarking (ILAMB) package for use by the wider research community. We will present a perspective on the design and integration of end-to-end infrastructure for data acquisition, edge computing, HPC simulation, analysis, and validation, where Artificial Intelligence (AI) approaches are used throughout the distributed workflow to improve accuracy and computational performance.

Durden, David J.↗
DOE OSTI2024

Scaling Ensembles of Data-Intensive Quantum Chemical Calculations for Millions of Molecules

Deep learning models are efficient computational tools that can accelerate the inverse design of molecules with desired functional properties by generating predictions at a fraction of the time required by traditional quantum chemical approaches. To ensure that a model maintains accuracy and transferability across broad regions of the chemical space explored during the inverse design, it must be trained on massively large volumes of simulation data. This requires running large-scale ensemble quantum chemical calculations on high-performance computing (HPC) systems for data collection. However, the efficient execution of such large ensemble calculations and the management of large volumes of output data require tools that can judiciously utilize computational resources and manage metadata overhead on the file system. Therefore, we present a high-performance, scalable, ensemble management framework for performing data-intensive quantum chemical electronic structure calculations for organic molecules. This framework provides abstractions to plug different ab initio, first principles, and first principles-based semi-empirical methods and executes them efficiently at large scale on HPC systems. It dynamically distributes tasks to resources and uses tiered storage for managing large collections of files. We employed this framework to process over ten million organic molecules and generate open-source datasets that provide UV-vis absorption spectra by running time-dependent density-functional tight-binding calculations. It is the largest database containing molecular optical spectra that were simulated with quantum chemical methods in a consistent manner.

Mehta, Kshitij↗
DOE OSTI2014

Fault Survivability of Lightweight Operating Systems for exascale

Concern is growing in the High-Performance Computing community regarding the reliability of proposed exascale systems. Current research has shown that the expected reliability of these machines will greatly reduce their scalability. In constrast to current fault tolerance methods whose reliability focus is only the application, this project investigates the benefits integrating reliability mechcanisms in the operating system and runtime, as well as the appli- cation. More specifically, this project has three broad contributions in the field: First, using failure logs from current leadership-class high-performance computing systems, we outline the failures common on these large-scale systems. Second, we describe a novel memory pro- tection mechcanism capable of protecting common observed failures that uses the similarity inherrant in many OS and applications state, thereby reducing overheads. Finally, using an analogy with OS jitter, we develop a highly effecient simulator capable predicting the performance of resilience methods at the scales expected for future extreme-scale systems.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2022

HPC Molecular Simulation Tries Out a New GPU: Experiences on Early AMD Test Systems for the Frontier Supercomputer

Molecular simulation is an important tool for nu- merous efforts in physics, chemistry, and the biological sciences. Simulating molecular dynamics requires extremely rapid cal- culations to enable sufficient sampling of simulated temporal molecular processes. The Hewlett Packard Enterprise (HPE) Cray EX Frontier supercomputer installed at the Oak Ridge Leadership Computing Facility (OLCF) will provide an exascale resource for open science, and will feature graphics processing units (GPUs) from Advanced Micro Devices (AMD). The future LUMI supercomputer in Finland will be based on an HPE Cray EX platform as well. Here we test the ports of several widely used molecular dynamics packages that have each made substantial use of acceleration with NVIDIA GPUs, on Spock, the early Cray pre-Frontier testbed system at the OLCF which employs AMD GPUs. These programs are used extensively in industry for pharmaceutical and materials research, as well as academia, and are also frequently deployed on high-performance computing (HPC) systems, including national leadership HPC resources. We find that in general, performance is competitive and installation is straightforward, even at these early stages in a new GPU ecosystem. Our experiences point to an expanding arena for GPU vendors in HPC for molecular simulation.

Sedova, Ada↗
DOE OSTI2021

Mitigating Inter-Job Interference via Process-Level Quality-of-Service

Jobs on most high-performance computing (HPC) systems share the network with other concurrently executing jobs. Network sharing leads to contention that can severely degrade performance. Here we investigate the use of Quality of Service (QoS) mechanisms to reduce the negative impacts of network contention. QoS allows users to manage resource sharing between network flows and to provide bandwidth guarantees to specific flows. Our results show that careful use of QoS reduces the impact of network contention for specific jobs, resulting in up to a 40% performance improvement. In some cases, it completely eliminates the impact of contention. It achieves these improvements with limited negative impact to other jobs; any job that experiences performance loss typically degrades less than 5%, and often much less. Our approach can help ensure that HPC machines maintain high levels of throughput as per-node compute power continues to increase faster than network bandwidth.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2019

Abstract Machine Models and Proxy Architectures for Exascale Computing

To achieve exascale computing, fundamental hardware architectures must change. The most significant consequence of this assertion is the impact on the scientific and engineering applications that run on current high performance computing (HPC) systems, many of which codify years of scientific domain knowledge and refinements for contemporary computer systems. In order to adapt to exascale architectures, developers must be able to reason about new hardware and determine what programming models and algorithms will provide the best blend of performance and energy efficiency into the future. While many details of the exascale architectures are undefined, an abstract machine model is designed to allow application developers to focus on the aspects of the machine that are important or relevant to performance and code structure. These models are intended as communication aids between application developers and hardware architects during the co-design process. We use the term proxy architecture to describe a parameterized version of an abstract machine model, with the parameters added to elucidate potential speeds and capacities of key hardware components. These more detailed architectural models are formulated to enable discussion between the developers of analytic models and simulators and computer hardware architects. They allow for application performance analysis and hardware optimization opportunities. In this report our goal is to provide the application development community with a set of models that can help software developers prepare for exascale. In addition, through the use of proxy architectures, we can enable a more concrete exploration of how well new and evolving application codes map onto future architectures. This second version of the document addresses system scale considerations and provides a system-level abstract machine model with proxy architecture information.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2020

Towards Interactive, Reproducible Analytics at Scale on HPC Systems

The growth in scientific data volumes has resulted in a need to scale up processing and analysis pipelines using High Performance Computing (HPC) systems. These workflows need interactive, reproducible analytics at scale. The Jupyter platform provides core capabilities for interactivity but was not designed for HPC systems. In this paper, we outline our efforts that bring together core technologies based on the Jupyter Platform to create interactive, reproducible analytics at scale on HPC systems. Our work is grounded in a real world science use case-applying geophysical simulations and inversions for imaging the subsurface. Our core platform addresses three key areas of the scientific analysis workflow-reproducibility, scalability, and interactivity. We describe our implemention of a system, using Binder, Science Capsule, and Dask software. We demonstrate the use of this software to run our use case and interactively visualize real-Time streams of HDF5 data.

containers↗
DOE OSTI2022

Distributed deep learning training using silicon photonic switched architectures

The scaling trends of deep learning models and distributed training workloads are challenging network capacities in today’s datacenters and high-performance computing (HPC) systems. We propose a system architecture that leverages silicon photonic (SiP) switch-enabled server regrouping using bandwidth steering to tackle the challenges and accelerate distributed deep learning training. In addition, our proposed system architecture utilizes a highly integrated operating system-based SiP switch control scheme to reduce implementation complexity. To demonstrate the feasibility of our proposal, we built an experimental testbed with a SiP switch-enabled reconfigurable fat tree topology and evaluated the network performance of distributed ring all-reduce and parameter server workloads. The experimental results show up to 3.6× improvements over the static non-reconfigurable fat tree. Our large-scale simulation results show that server regrouping can deliver up to 2.3× flow throughput improvement for a 2× tapered fat tree and a further 11% improvement when higher-layer bandwidth steering is employed. The collective results show the potential of integrating SiP switches into datacenters and HPC systems to accelerate distributed deep learning training.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2018

MaDaTS: Managing Data on Tiered Storage for Scientific Workflows

Scientific workflows are processing large amounts of data through complex simulation and analysis tasks. Meanwhile, the need to minimize I/O costs on next generation systems and the evolution of new technologies (NVRAMs, SSDs etc.) is resulting in deeper storage hierarchies on High Performance Computing (HPC) systems. A multi-tiered storage hierarchy introduces complexities in workflow and data management. There is need for simple and flexible data abstractions that can allow users to seamlessly manage workflow data and tasks on HPC systems with multiple storage tiers. MaDaTS (Managing Data on Tiered Storage for Scientific Workflows) provides an API and a command-line tool that allows users to manage their workflows and data on tiered storage (Ghoshal & Ramakrishnan (2017)).

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2020

The Locus Algorithm III: A Grid Computing system to generate catalogues of optimised pointings for Differential Photometry

This paper discusses the hardware and software components of the Grid Computing system used to implement the Locus Algorithm to identify optimum pointings for differential photometry of 61,662,376 stars and 23,799 quasars. The scale of the data, together with initial operational assessments demanded a High Performance Computing (HPC) system to complete the data analysis. Grid computing was chosen as the HPC solution as the optimum choice available within this project. The physical and logical structure of the National Grid computing Infrastructure informed the approach that was taken. That approach was one of layered separation of the different project components to enable maximum flexibility and extensibility.

Creaner, Oisń↗
DOE OSTI2018

ANALYSIS OF COMMUNICATION PERFORMANCE DEGRADATION OF THE RADIATION TRANSPORT CODE PIDOTS ON HIGH-UTILIZATION, MULTI-USER HPC SYSTEMS

The PIDOTS radiation transport code implements a spatially decomposed Integral Transport Matrix Method (ITMM) solver, which is intended to fully utilize the capabilities of modern, massively parallel high-performance computing (HPC) systems. While the code shows promising results, there was also an unexpected loss of parallel efficiency on the test systems as the number of participating processors grew and the parallelization grain size got finer. We seek to identify and characterize the communication-latency based effects that contribute to this slowdown. Through the creation of a high-level, parameterized representation of the workload of the code, the communication methodology was identified as the likely reason. From there, low-level, InfiniBand communication performance data measured on the Falcon HPC at Idaho National Laboratory (INL) was used to produce a discrete-event model of the communication scheme. The data, as well as the model, show that infrequent, large spikes in send/receive latency drive an unexpectedly substantial increase in projected runtime of a code. Furthermore, these effects are more pronounced under the high-utilization, scattered-workload environment of Falcon. Based on results from the model, it can be shown that a high-communication volume, small message-size regime can easily lead to slowdowns of ~5-10x, when compared to ideal results, as the processor count increases.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2016

Towards performance-portability of the Albany Finite Element analysis code using the Kokkos library of Trilinos

Performance portability on heterogeneous high-performance computing (HPC) systems is a major challenge faced today by code developers: parallel code needs to execute correctly as well as with high performance on machines with different architectures, operating systems, and software libraries. The Finite Element Method (FEM) is a popular and flexible method for discretizing partial differential equations arising in a wide variety of scientific, engineering, and industry applications that require HPC. This paper presents some preliminary results pertaining to our development of a performance portable implementation of the FEM-based Albany code. Performance portability is achieved using the Kokkos library of Trilinos. We present performance results for two different physics simulations modules in Albany: the Aeras global atmosphere dynamical code and the FELIX land-ice solver. As a result, numerical experiments show that our single code implementation gives reasonable performance across two multi-core/many-core architectures: NVIDIA GPUs and multi-core CPUs.

97 MATHEMATICS AND COMPUTING↗