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At least 289 records · Page 16

Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program

One of the justifiable criticisms of human genetic studies is the underrepresentation of participants from diverse populations. Lack of inclusion must be addressed at-scale to identify causal disease factors and understand the genetic causes of health disparities. We present genome-wide associations for 2068 traits from 635,969 participants in the Department of Veterans Affairs Million Veteran Program, a longitudinal study of diverse United States Veterans. Systematic analysis revealed 13,672 genomic risk loci; 1608 were only significant after including non-European populations. Fine-mapping identified causal variants at 6318 signals across 613 traits. One-third (n = 2069) were identified in participants from non-European populations. This reveals a broadly similar genetic architecture across populations, highlights genetic insights gained from underrepresented groups, and presents an extensive atlas of genetic associations.

59 BASIC BIOLOGICAL SCIENCES↗

Transmission estimation at the quantum Cramér-Rao bound with macroscopic quantum light

The field of quantum metrology seeks to apply quantum techniques and/or resources to classical sensing approaches with the goal of enhancing the precision in the estimation of a parameter beyond what can be achieved with classical resources. Theoretically, the fundamental minimum uncertainty in the estimation of a parameter for a given probing state is bounded by the quantum Cramér-Rao bound. From a practical perspective, it is necessary to find physical measurements that can saturate this fundamental limit and to show experimentally that it is possible to perform measurements with the required precision to do so. Here we perform experiments that saturate the quantum Cramér-Rao bound for transmission estimation over a wide range of transmissions when probing the system under study with a continuous wave bright two-mode squeezed state. To properly take into account the imperfections in the generation of the quantum state, we extend our previous theoretical results to incorporate the measured properties of the generated quantum state. For our largest transmission level of 84%, we show a 62% reduction over the optimal classical protocol in the variance in transmission estimation when probing with a bright two-mode squeezed state with -8 dB of intensity-difference squeezing. Given that transmission estimation is an integral part of many sensing protocols, such as plasmonic sensing, spectroscopy, calibration of the quantum efficiency of detectors, etc., the results presented promise to have a significant impact on a number of applications in various fields of research.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Wigner meets ’t Hooft near the black hole horizon

Recent work on Euclidean quantum gravity, black hole thermodynamics, and the holographic principle has seen the return of random matrix models as a powerful tool. It is explained how they allow for the study of the physics well beyond the perturbative expansion. In fact, a fully nonperturbative treatment naturally unites the familiar approach of summing over smooth geometries of all topologies with the statistical approach to characterize the typical properties of a Hamiltonian. Remarkably, this leads to an explicit excavation of the underlying microstates of quantum gravity that has applications to the low-temperature dynamics of a large class of black holes.

Astronomy & Astrophysics↗

MatLab Scripts

Explore the source record for details and available documents.

Ho, Clifford↗

PVCollada schema

SAND2025-11606O xml schema for PV uses Collada 1.4 schema to provide tag names and structures to allow PV software to exchange Collada files with PV-specific data. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

Crosby, Sean↗

Convection–Kelvin Wave Coupling in a Global Convection-Permitting Model

A convectively coupled equatorial Kelvin wave (CCKW) was observed over the equatorial Indian Ocean in early November 2011 during the DYNAMO field campaign. This study examines the structure of the CCKW event using two simulations made using the MPAS model: one with 3-km grid spacing without convective parameterization and another with a 15-km grid and parameterized convection. Both simulations qualitatively capture the observed structure of the CCKW, including its vertical tilt and progression of cloud/precipitation structures. The two simulations, however, differ substantially in the amplitude of the CCKW-associated precipitation. While the 3-km run realistically captures the observed modulation of precipitation by the CCKW, the 15-km simulation severely underestimates its magnitude. To understand the difference between the two MPAS simulations regarding wave–convection coupling within the CCKW, the relationship of precipitation with convective inhibition, saturation fraction, and surface turbulent fluxes is investigated. Results show that the 15-km simulation underestimates the magnitude of the CCKW precipitation peak in association with its unrealistically linear relationship between moisture and precipitation. Precipitation, both in observations and the 3-km run, is predominantly controlled by saturation fraction and this relationship is exponential. In contrast, the parameterized convection in the 15-km run is overly sensitive to convective inhibition and not sensitive enough to environmental moisture. The implications of these results on CCKW theories are discussed.

54 ENVIRONMENTAL SCIENCES↗

The Impacts of Horizontal Grid Spacing and Cumulus Parameterization on Subseasonal Prediction in a Global Convection-Permitting Model

Monthlong simulations targeting four Madden–Julian oscillation events made with several global model configurations are verified against observations to assess the roles of grid spacing and convective parameterization on the representation of tropical convection and midlatitude forecast skill. Specifically, the performance of a global convection-permitting model (CPM) configuration with a uniform 3-km mesh is compared to that of a global 15-km mesh with and without convective parameterization, and of a variable-resolution “channel” simulation using 3-km grid spacing only in the tropics with a scale-aware convection scheme. It is shown that global 3-km simulations produce realistic tropical precipitation statistics, except for an overall wet bias and delayed diurnal cycle. The channel simulation performs similarly, although with an unrealistically higher frequency of heavy rain. The 15-km simulations with and without cumulus schemes produce too much light and heavy tropical precipitation, respectively. Without convection parameterization, the 15-km global model produces unrealistically abundant, short-lived, and intense convection throughout the tropics. Only the global CPM configuration is able to capture eastward-propagating Madden–Julian oscillation events, and the 15-km runs favor stationary or westward-propagating convection organized at the planetary scale. The global 3-km CPM exhibits the highest extratropical forecast skill aloft and at the surface, particularly during week 3 of each hindcast. Although more cases are needed to confirm these results, this study highlights many potential benefits of using global CPMs for subseasonal forecasting. Furthermore, results show that alternatives to global convection-permitting resolution—using coarser or spatially variable resolution—feature compromises that may reduce their predictive performance.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

The Pacific Northwest Heat Wave of 25–30 June 2021: Synoptic/Mesoscale Conditions and Climate Perspective

Abstract An unprecedented heat wave occurred over the Pacific Northwest and southwest Canada on 25–30 June 2021, resulting in all-time temperature records that greatly exceeded previous record maximum temperatures. The impacts were substantial, including several hundred deaths, thousands of hospitalizations, a major wildfire in Lytton, British Columbia, Canada, and severe damage to regional vegetation. Several factors came together to produce this extreme event: a record-breaking midtropospheric ridge over British Columbia in the optimal location, record-breaking midtropospheric temperatures, strong subsidence in the lower atmosphere, low-level easterly flow that produced downslope warming on regional terrain and the removal of cooler marine air, an approaching low-level trough that enhanced downslope flow, the occurrence at a time of maximum insolation, and drier-than-normal soil moisture. It is shown that all-time-record temperatures have not become more frequent and that annual high temperatures only increased at the rate of baseline global warming. Although anthropogenic warming may have contributed as much as 1°C to the event, there is little evidence of further amplification from increasing greenhouse gases. Weather forecasts were excellent for this event, with highly accurate predictions of the extreme temperatures. Significance Statement This paper describes the atmospheric evolution that produced an extreme heat wave over the Pacific Northwest during June 2021 and puts this event into historical perspective.

Meteorology & Atmospheric Sciences↗

Low-abundance populations distinguish microbiome performance in plant cell wall deconstruction

Abstract Background Plant cell walls are interwoven structures recalcitrant to degradation. Native and adapted microbiomes can be particularly effective at plant cell wall deconstruction. Although most understanding of biological cell wall deconstruction has been obtained from isolates, cultivated microbiomes that break down cell walls have emerged as new sources for biotechnologically relevant microbes and enzymes. These microbiomes provide a unique resource to identify key interacting functional microbial groups and to guide the design of specialized synthetic microbial communities. Results To establish a system assessing comparative microbiome performance, parallel microbiomes were cultivated on sorghum ( Sorghum bicolor L. Moench) from compost inocula. Biomass loss and biochemical assays indicated that these microbiomes diverged in their ability to deconstruct biomass. Network reconstructions from gene expression dynamics identified key groups and potential interactions within the adapted sorghum-degrading communities, including Actinotalea , Filomicrobium , and Gemmatimonadetes populations. Functional analysis demonstrated that the microbiomes proceeded through successive stages that are linked to enzymes that deconstruct plant cell wall polymers. The combination of network and functional analysis highlighted the importance of cellulose-degrading Actinobacteria in differentiating the performance of these microbiomes. Conclusions The two-tier cultivation of compost-derived microbiomes on sorghum led to the establishment of microbiomes for which community structure and performance could be assessed. The work reinforces the observation that subtle differences in community composition and the genomic content of strains may lead to significant differences in community performance.

59 BASIC BIOLOGICAL SCIENCES↗

EGS Collab Experiment 1: 3D Seismic Velocity Model and Updated Microseismic Catalog from Double-Difference Seismic Tomography

This package contains a 3D Seismic velocity model and an updated microseismic catalog obtained for a double-difference seismic tomography study. The 3D_seismic_velocity_model text file contains x (m), y(m), z(m), P-wave velocity (km/s), P-wave velocity quality indicator (1 for well-constrained; 0 for poorly constrained), S-wave velocity (km/s), and S-wave velocity quality indicator (1 for well-constrained; 0 for poorly constrained). The Updated_MEQ_catalog text file contains event origin time, x(m), y(m), z(m), error in x (m), error in y (m), error in z (m), and RMS misfit (millisecond). The 3D_seismic_P-wave_velocity_model animation file shows slices of the 3D P-wave velocity model. The 3D_seismic_S-wave_velocity_model animation file shows slices of the 3D S-wave velocity model. The Interactive_MEQ_location_comparison API file is an interactive visualization of the updated microseismic event locations and the original seismic catalog. The visualization allows users to view and compare the event locations by dragging, rotating, and zooming in. An updated version of 3D_seismic_velocity_model and associated animations were included, which were calculated with a more strict assumption for quality indicators.

15 GEOTHERMAL ENERGY↗

WHOLESCALE: Microseismic Event Catalog for San Emidio, Nevada 2022

This submission includes a high-precision seismic event catalog estimated from seismic data collected at San Emidio, Nevada from April to May 2022. The catalog lists the precise time, location, and magnitude of microseismic events recorded during this period. Both the seismic data and microseismic event catalog were produced as part of the Water & Hole Observations Leverage Effective Stress Calculations and Lessen Expenses (WHOLESCALE) project. Attached here are the microseismic event catalog, a link to the raw seismic data, and a detailed description of methods used to create the catalog.

15 GEOTHERMAL ENERGY↗

SBML Level 3: an extensible format for the exchange and reuse of biological models

Systems biology has experienced dramatic growth in the number, size, and complexity of computational models. To reproduce simulation results and reuse models, researchers must exchange unambiguous model descriptions. We review the latest edition of the Systems Biology Markup Language (SBML), a format designed for this purpose. A community of modelers and software authors developed SBML Level 3 over the past decade. Its modular form consists of a core suited to representing reaction-based models and packages that extend the core with features suited to other model types including constraint-based models, reaction-diffusion models, logical network models, and rule-based models. The format leverages two decades of SBML and a rich software ecosystem that transformed how systems biologists build and interact with models. More recently, the rise of multiscale models of whole cells and organs, and new data sources such as single-cell measurements and live imaging, has precipitated new ways of integrating data with models. We provide our perspectives on the challenges presented by these developments and how SBML Level 3 provides the foundation needed to support this evolution.

59 BASIC BIOLOGICAL SCIENCES↗

Seismic Tomography 2024

Seismic tomography is the most abundant source of information about the internal structure of the Earth at scales ranging from a few meters to thousands of kilometers. It constrains the properties of active volcanoes, earthquake fault zones, deep reservoirs and storage sites, glaciers and ice sheets, or the entire globe. It contributes to outstanding societal problems related to natural hazards, resource exploration, underground storage, and many more. The recent advances in seismic tomography are being translated to nondestructive testing, medical ultrasound, and helioseismology. Nearly 50 yr after its first successful applications, this article offers a snapshot of modern seismic tomography. Focused on major challenges and particularly promising research directions, it is intended to guide both Earth science professionals and early-career scientists. The individual contributions by the coauthors provide diverse perspectives on topics that may at first seem disconnected but are closely tied together by a few coherent threads: multiparameter inversion for properties related to dynamic processes, data quality, and geographic coverage, uncertainty quantification that is useful for geologic interpretation, new formulations of tomographic inverse problems that address concrete geologic questions more directly, and the presentation and quantitative comparison of tomographic models. Finally, it remains to be seen which of these problems will be considered solved, solved to some extent, or practically unsolvable over the next decade.

58 GEOSCIENCES↗

PubDAS: A PUBlic Distributed Acoustic Sensing Datasets Repository for Geosciences

During the past few years, distributed acoustic sensing (DAS) has become an invaluable tool for recording high-fidelity seismic wavefields with great spatiotemporal resolutions. However, the considerable amount of data generated during DAS experiments limits their distribution with the broader scientific community. Such a bottleneck inherently slows down the pursuit of new scientific discoveries in geosciences. Here, we introduce PubDAS—the first large-scale open-source repository where several DAS datasets from multiple experiments are publicly shared. PubDAS currently hosts eight datasets covering a variety of geological settings (e.g., urban centers, underground mines, and seafloor), spanning from several days to several years, offering both continuous and triggered active source recordings, and totaling up to ~90 TB of data. Here this article describes these datasets, their metadata, and how to access and download them. Some of these datasets have only been shallowly explored, leaving the door open for new discoveries in Earth sciences and beyond.

54 ENVIRONMENTAL SCIENCES↗

Fast Scanning Diamond Detector for Electron Beam Profile Monitoring

The first prototype of a fast scanning diamond beam profile detector (DBPD) suitable for invasive high power CW electron beam core profile measurements in transmittance mode was developed. It consists of a multi-strip solid state diamond detector to scan with high speed (up to 1 m/s) and precision (about 5 μm) through the core of an electron beam. The diamond sensor was made from a thin polycrystalline diamond (PCD) plate with highly B-doped diamond conductive strips both grown by CVD. Transient currents from the multi-strip detector were measured with fast digitizing electrometers. Successful operation of the DBPD was demonstrated for pulsed (5 Hz) and CW (78 kHz) CeC beams, including the detector’s ability to withstand a 20 sec insertion into the CW CeC beam core. The X-Y beam spatial profile was measured in one scan. Thermal modelling demonstrated a manageable thermal impact even from a relatively long insertion of the diamond sensor into the CW CeC core and very short (0.2 s) insertion into the CW LEReC beam core. Electrical impedance modelling of the detector and vacuum chamber assembly demonstrated minimal impact on beam line impedance with diamond sensor insertion.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Superconducting RF Gun with High Current and the Capability to Generate Polarized Electron Beams

High-current low-emittance CW electron beams are indispensable for nuclear and high-energy physics fixed target and collider experiments, cooling high energy hadron beams, generating CW beams of monoenergetic X-rays (in FELs) and gamma-rays (in Compton sources). Polarization of electrons in these beams provides extra value by opening a new set of observables and frequently improving the data quality. We report on the upgrade of the unique and fully functional CW SRF 1.25 MeV SRF gun, built as part of the Coherent electron Cooling (CeC) project, which has demonstrated sustained CW operation with CsK2Sb photocathodes generating electron bunches with record-low transverse emittances and record-high bunch charge exceeding 10 nC. We propose to extend the capabilities of this system to high average current of 100 milliampere in two steps: increasing the current 30-fold at each step with the goal to demonstrate reliable long-term operation of the high-current low-emittance CW SRF guns. We also propose to test polarized GaAs photocathodes in the ultra-high vacuum (UHV) environment of the SRF gun, which has never been successfully demonstrated in RF accelerators.

43 PARTICLE ACCELERATORS↗

pvlib python: 2023 project update

pvlib python is a community-developed, open-source software toolbox for simulating the performance of solar photovoltaic (PV) energy components and systems. It provides reference implementations of over 100 empirical and physics-based models from the peer-reviewed scientific literature, including solar position algorithms, irradiance models, thermal models, and PV electrical models. In addition to individual low-level model implementations, pvlib python provides high-level workflows that chain these models together like building blocks to form complete “weather-to-power” photovoltaic system models. It also provides functions to fetch and import a wide variety of weather datasets useful for PV modeling. pvlib python has been developed since 2013 and follows modern best practices for open-source python software, with comprehensive automated testing, standards-based packaging, and semantic versioning. Its source code is developed openly on GitHub and releases are distributed via the Python Package Index (PyPI) and the conda-forge repository. pvlib python’s source code is made freely available under the permissive BSD-3 license. Here we (the project’s core developers) present an update on pvlib python, describing capability and community development since our 2018 publication (Holmgren, Hansen, & Mikofski, 2018).

14 SOLAR ENERGY↗