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All sources NASA NTRS DOE OSTI

DOE OSTI2021

Accelerated Assessment of Critical Infrastructure in Aiding Recovery Efforts During Natural and Human-made Disaster

Relief and recovery from disasters (both natural and human-made) require a coordinated approach across several federal and state government agencies. In order to achieve optimal resource allocation and deployment of first responders, accurate and timely assessment of the impact and extent of destruction are the cornerstones to any recovery effort. Ideally, this knowledge should be gathered and shared within the first 0-24 hours (termed as "Acute Phase" by the U.S. CDC guideline) for informed decision-making. But achieving this poses significant challenges for the data collection and data harmonization processes, particularly when voluminous data are being generated from diverse and distributed sources during the disaster responses. To this end, this work developed a scalable and efficient workflow to dynamically collect and harmonize crowd-sourced geographic multi-modal data, and then assess critical infrastructure (CI) damaged during disaster events. We demonstrate the application of our framework with two real-world experiences in addressing post-disaster recovery efforts - for the Bahamas (Natural - due to Hurricane Dorian, 2019) and Beirut (Human-made - due to explosion caused by the ammonium nitrate stored in a warehouse, 2020). We have illustrated that a coordinated effort is needed for planning as well as for execution to achieve informed decision making.

Thakur, Gautam Malviya↗

DOE OSTI2020

Improving radiograph analysis throughput through transfer learning and object detection

SIGN Fracture Care International partners with surgeons in low-resource hospitals worldwide to provide access to effective orthopedic care by donating educational materials and innovatively designed surgical implants. Over two decades, SIGN’s Online Surgical Database (SOSD) has grown to contain over 500,000 medical images, with radiographs holding the majority share. One challenge in working with hospitals worldwide is that both the radiographs uploaded to the SOSD and the data entry accompanying the uploads vary in quality. To improve the accuracy of data in the SOSD, we trained a model to detect surgical implants in radiographs. We first developed a tool to automatically detect radiographs, then trained an object detection model to determine the number and placement of surgical implants visible in the radiograph. Active learning was used to generate a training set containing 2,510 radiographs with screws, nails, and plates labeled by bounding boxes. Training a model to simultaneously recognize all three classes of implants gave a low average precision (AP) for the plate class, likely due to the low number of plate instances in our training set and the large variety of surgical plates used by SIGN-partnered surgeons. Applying standard image augmentation techniques to increase the plate count in our training set did not appreciably increase the AP of plate detection. To improve plate detection, we redrew the bounding boxes to account for correlations between the screw and plate classes. Training one model to detect nails and screws and a separate model to detect plates increased the AP of plate detection by 78.8 percentage points. The AP of each class was 80.7% for screws, 93.6% for nails, and 92.6% for plates; meanwhile, the sensitivity was 92% for screws, 86% for nails, and 81% for plates. We show that object detection methods can be used to detect surgical implants in radiographs of varying quality; however, the detection ability is dependent on the type of implant, and some implants, in our case plates, must be treated differently than others. Such tools can improve the throughput of radiograph analysis, assisting physicians and surgeons with the treatment of bone fractures.

60 APPLIED LIFE SCIENCES↗

NASA NTRS1984

MIDAS - A microcomputer-based image display and analysis system with full Landsat frame processing capabilities

Image Display and Analysis Systems (MIDAS) developed at NASA/Ames for the analysis of Landsat MSS images is described. The MIDAS computer power and memory, graphics, resource-sharing, expansion and upgrade, environment and maintenance, and software/user-interface requirements are outlined; the implementation hardware (including 32-bit microprocessor, 512K error-correcting RAM, 70 or 140-Mbyte formatted disk drive, 512 x 512 x 24 color frame buffer, and local-area-network transceiver) and applications software (ELAS, CIE, and P-EDITOR) are characterized; and implementation problems, performance data, and costs are examined. Planned improvements in MIDAS hardware and design goals and areas of exploration for MIDAS software are discussed.

Hofman, L. B.↗

NASA NTRS2017

An Innovative Infrastructure with a Universal Geo-Spatiotemporal Data Representation Supporting Cost-Effective Integration of Diverse Earth Science Data

The SpatioTemporal Adaptive Resolution Encoding (STARE) is a unifying scheme encoding geospatial and temporal information for organizing data on scalable computing/storage resources, minimizing expensive data transfers. STARE provides a compact representation that turns set-logic functions into integer operations, e.g. conditional sub-setting, taking into account representative spatiotemporal resolutions of the data in the datasets. STARE geo-spatiotemporally aligns data placements of diverse data on massive parallel resources to maximize performance. Automating important scientific functions (e.g. regridding) and computational functions (e.g. data placement) allows scientists to focus on domain-specific questions instead of expending their efforts and expertise on data processing. With STARE-enabled automation, SciDB (Scientific Database) plus STARE provides a database interface, reducing costly data preparation, increasing the volume and variety of interoperable data, and easing result sharing. Using SciDB plus STARE as part of an integrated analysis infrastructure dramatically eases combining diametrically different datasets.

Rilee, Michael Lee↗

NASA NTRS2023

Global Assessment of Drought Characteristics in the Anthropocene

Contemporary understanding of the impacts of climate change on global drought characteristics (e.g., intensities, extents) is still limited and not well understood. This knowledge is critical because projected changes in climate are expected to impact on future water availability as well as influence decisions on how water resources are allocated. The main aim of this study is to improve understanding of drought characteristics (extents and duration) in the Anthropocene where rapid changes in the environment are caused by the composite influence of human activities and climate change. Multi-scale earth observation data (1980 - 2020) and the Coupled Model Intercomparison Project Phase 6 climate models, which incorporate the Shared Socioeconomic Pathways (2040 - 2070 and 2070 - 2100) are used to assess these characteristics as well as identify climatic hotspots where changes in drought characteristics could drive groundwater hydrology. Results show that towards the end of the 21st century, global land areas under drought will significantly decrease but their durations will not. Generally, there is evidence of significant decline in the proportion of areas that will experience various drought intensities (moderate, severe and extreme drought) in the future and for each category, drought affected areas will not reach 30% on average. Moreover, some regions are potential hotspots of climate–groundwater interactions where drought events could directly impact on groundwater. This is because of the varying degree of strong correlations (positive and negative) between climate and groundwater data in some areas (e.g., Australia, Europe, Southern Africa, Asia). The relatively strong negative correlations in some of these hotspots are indicative of the presence of considerable lags, that could be caused by aridity as well as human groundwater footprints.

Christopher E Ndehedehe↗

DOE OSTI2020

Advanced Synchrophasor-based Application for Potential Distributed Energy Resources Management: Key Technology, Challenge and Vision

With an increasing number of distributed energy resources (DERs) integrating into the power system, the power grid is becoming more complex and uncertain. Owing to most of DERs are through grid-connected converters to integrate into the power system, the intermittent nature and resource-depended characteristic of the DERs are challenging their monitoring and control. Conventional synchronized measurement devices (SMDs) may be difficult to provide qualified data for DERs management for its accuracy and reporting-rate limitation. The monitoring systems developed basing on SMDs may be insufficient for depicting detailed dynamic manifestations of power systems with a high proportion integration of DERs. This paper shares some advanced synchrophasor-based applications developed in FNET/GridEye, which have a broad prospect for assisting system operator on the control and integration of the DERs.

Wang, Weikang↗

NASA NTRS2007

Information Metacatalog for a Grid

SWIM is a Software Information Metacatalog that gathers detailed information about the software components and packages installed on a grid resource. Information is currently gathered for Executable and Linking Format (ELF) executables and shared libraries, Java classes, shell scripts, and Perl and Python modules. SWIM is built on top of the POUR framework, which is described in the preceding article. SWIM consists of a set of Perl modules for extracting software information from a system, an XML schema defining the format of data that can be added by users, and a POUR XML configuration file that describes how these elements are used to generate periodic, on-demand, and user-specified information. Periodic software information is derived mainly from the package managers used on each system. SWIM collects information from native package managers in FreeBSD, Solaris, and IRX as well as the RPM, Perl, and Python package managers on multiple platforms. Because not all software is available, or installed in package form, SWIM also crawls the set of relevant paths from the File System Hierarchy Standard that defines the standard file system structure used by all major UNIX distributions. Using these two techniques, the vast majority of software installed on a system can be located. SWIM computes the same information gathered by the periodic routines for specific files on specific hosts, and locates software on a system given only its name and type.

Kolano, Paul↗

DOE OSTI2023

GMRT H I mapping of mid-infrared bright blue compact dwarf galaxies W1016+3754 and W2326+0608

We present the results from deep 21 cm H i mapping of two nearby Blue Compact Dwarf Galaxies (BCDGs), W1016+3754 and W2326+0608, using the Giant Metrewave Radio Telescope (GMRT). These BCDGs are bright in mid-infrared data and undergoing active star formation. With the GMRT observations, we investigate the role of cold neutral gas as the fuel resource of the current intensive star formation activity. Star formation in these galaxies is likely to be due to the infall of H I gas triggered by gravitational perturbation from nearby galaxies. The BCDG W2326+0608 and nearby galaxy SDSS J232603.86+060835.8 share a common H I envelope. We find star formation takes place in the high H I column density gas (≳10 21 cm −2 ) regions for both BCDGs. The recent starburst and infall of metal-free gas have kept the metallicity low for the BCDG W1016+3754. The metallicity for W2326+0608 is higher, possibly due to tidal interaction with the nearby galaxy SDSS J232603.86+060835.8.

79 ASTRONOMY AND ASTROPHYSICS↗

NASA NTRS1988

Speech recognition in advanced rotorcraft - Using speech controls to reduce manual control overload

An experiment has been conducted to ascertain the usefulness of helicopter pilot speech controls and their effect on time-sharing performance, under the impetus of multiple-resource theories of attention which predict that time-sharing should be more efficient with mixed manual and speech controls than with all-manual ones. The test simulation involved an advanced, single-pilot scout/attack helicopter. Performance and subjective workload levels obtained supported the claimed utility of speech recognition-based controls; specifically, time-sharing performance was improved while preparing a data-burst transmission of information during helicopter hover.

Vidulich, Michael A.↗

DOE OSTI2022

Data and Multistage Optimization for the New Grid

Three essential capabilities for using exascale computing resources on next generation power grid applications are: generating large renewable energy datasets, modeling damage and operations during and after extreme events, and employing multi-stage optimization for infrastructure planning. Powerscenarios, developed as part of the ExaSGD project, addresses these capabilities by enabling users to build synthetic wind farms for large test systems using numerical weather prediction-based data sources. We share examples of using Powerscenarios to build out wind farms on the ACTIVSg2000 test system, to enable simulated operations and emergency asset allocation during a hurricane strike, and to compute multi-stage infrastructure buildouts.

economic dispatch↗

DOE OSTI2022

Harmonizing model organism data in the Alliance of Genome Resources

The Alliance of Genome Resources (the Alliance) is a combined effort of 7 knowledgebase projects: Saccharomyces Genome Database, WormBase, FlyBase, Mouse Genome Database, the Zebrafish Information Network, Rat Genome Database, and the Gene Ontology Resource. The Alliance seeks to provide several benefits: better service to the various communities served by these projects; a harmonized view of data for all biomedical researchers, bioinformaticians, clinicians, and students; and a more sustainable infrastructure. The Alliance has harmonized cross-organism data to provide useful comparative views of gene function, gene expression, and human disease relevance. The basis of the comparative views is shared calls of orthology relationships and the use of common ontologies. The key types of data are alleles and variants, gene function based on gene ontology annotations, phenotypes, association to human disease, gene expression, protein–protein and genetic interactions, and participation in pathways. The information is presented on uniform gene pages that allow facile summarization of information about each gene in each of the 7 organisms covered (budding yeast, roundworm Caenorhabditis elegans, fruit fly, house mouse, zebrafish, brown rat, and human). The harmonized knowledge is freely available on the alliancegenome.org portal, as downloadable files, and by APIs. We expect other existing and emerging knowledge bases to join in the effort to provide the union of useful data and features that each knowledge base currently provides.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

Sandia Academic Alliance Program Collaboration Report: 2020-2021 Accomplishments

University partnerships play an essential role in sustaining Sandia’s vitality as a national laboratory. The SAA is an element of Sandia’s broader University Partnerships program, which facilitates recruiting and research collaborations with dozens of universities annually. The SAA program has two three-year goals. SAA aims to realize a step increase in hiring results, by growing the total annual inexperienced hires from each out-of-state SAA university. SAA also strives to establish and sustain strategic research partnerships by establishing several federally sponsored collaborations and multi-institutional consortiums in science & technology (S&T) priorities such as autonomy, advanced computing, hypersonics, quantum information science, and data science. The SAA program facilitates access to talent, ideas, and Research & Development facilities through strong university partnerships. Earlier this year, the SAA program and campus executives hosted John Myers, Sandia’s former Senior Director of Human Resources (HR) and Communications, and senior-level staff at Georgia Tech, U of Illinois, Purdue, UNM, and UT Austin. These campus visits provided an opportunity to share the history of the partnerships from the university leadership, tours of research facilities, and discussions of ongoing technical work and potential recruiting opportunities. These visits also provided valuable feedback to HR management that will help Sandia realize a step increase in hiring from SAA schools. The 2020-2021 Collaboration Report is a compilation of accomplishments in 2020 and 2021 from SAA and Sandia’s valued SAA university partners.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

NASA NTRS2013

An Offload NIC for NASA, NLR, and Grid Computing

This work addresses distributed data management and access dynamically configurable high-speed access to data distributed and shared over wide-area high-speed network environments. An offload engine NIC (network interface card) is proposed that scales at nX10-Gbps increments through 100-Gbps full duplex. The Globus de facto standard was used in projects requiring secure, robust, high-speed bulk data transport. Novel extension mechanisms were derived that will combine these technologies for use by GridFTP, bandwidth management resources, and host CPU (central processing unit) acceleration. The result will be wire-rate encrypted Globus grid data transactions through offload for splintering, encryption, and compression. As the need for greater network bandwidth increases, there is an inherent need for faster CPUs. The best way to accelerate CPUs is through a network acceleration engine. Grid computing data transfers for the Globus tool set did not have wire-rate encryption or compression. Existing technology cannot keep pace with the greater bandwidths of backplane and network connections. Present offload engines with ports to Ethernet are 32 to 40 Gbps f-d at best. The best of ultra-high-speed offload engines use expensive ASICs (application specific integrated circuits) or NPUs (network processing units). The present state of the art also includes bonding and the use of multiple NICs that are also in the planning stages for future portability to ASICs and software to accommodate data rates at 100 Gbps. The remaining industry solutions are for carrier-grade equipment manufacturers, with costly line cards having multiples of 10-Gbps ports, or 100-Gbps ports such as CFP modules that interface to costly ASICs and related circuitry. All of the existing solutions vary in configuration based on requirements of the host, motherboard, or carriergrade equipment. The purpose of the innovation is to eliminate data bottlenecks within cluster, grid, and cloud computing systems, and to add several more capabilities while reducing space consumption and cost. Provisions were designed for interoperability with systems used in the NASA HEC (High-End Computing) program. The new acceleration engine consists of state-ofthe- art FPGA (field-programmable gate array) core IP, C, and Verilog code; novel communication protocol; and extensions to the Globus structure. The engine provides the functions of network acceleration, encryption, compression, packet-ordering, and security added to Globus grid or for cloud data transfer. This system is scalable in nX10-Gbps increments through 100-Gbps f-d. It can be interfaced to industry-standard system-side or network-side devices or core IP in increments of 10 GigE, scaling to provide IEEE 40/100 GigE compliance.

Awrach, James↗

NASA NTRS2013

Future Challenges in Managing Human Health and Performance Risks for Space Flight

The global economy forces many nations to consider their national investments and make difficult decisions regarding their investment in future exploration. To enable safe, reliable, and productive human space exploration, we must pool global resources to understand and mitigate human health & performance risks prior to embarking on human exploration of deep space destinations. Consensus on the largest risks to humans during exploration is required to develop an integrated approach to mitigating risks. International collaboration in human space flight research will focus research on characterizing the effects of spaceflight on humans and the development of countermeasures or systems. Sharing existing data internationally will facilitate high quality research and sufficient power to make sound recommendations. Efficient utilization of ISS and unique ground-based analog facilities allows greater progress. Finally, a means to share results of human research in time to influence decisions for follow-on research, system design, new countermeasures and medical practices should be developed. Although formidable barriers to overcome, International working groups are working to define the risks, establish international research opportunities, share data among partners, share flight hardware and unique analog facilities, and establish forums for timely exchange of results. Representatives from the ISS partnership research and medical communities developed a list of the top ten human health & performance risks and their impact on exploration missions. They also drafted a multilateral data sharing plan to establish guidelines and principles for sharing human spaceflight data. Other working groups are also developing methods to promote international research solicitations. Collaborative use of analog facilities and shared development of space flight research and medical hardware continues. Establishing a forum for exchange of results between researchers, aerospace physicians and program managers takes careful consideration of researcher concerns and decision maker needs. Active participation by researchers in the development of this forum is essential, and the benefit can be tremendous. The ability to rapidly respond to research results without compromising publication rights and intellectual property will facilitate timely reduction in human health and performance risks in support of international exploration missions.

Corbin, Barbara J.↗

NASA NTRS2017

Public Outreach with NASA Lunar and Planetary Mapping and Modeling

NASA's Trek family of online portals is an exceptional collection of resources making it easy for students and the public to explore surfaces of planetary bodies using real data from real missions. Exotic landforms on other worlds and our plans to explore them provide inspiring context for science and technology lessons in classrooms, museums, and at home. These portals can be of great value to formal and informal educators, as well as to scientists working to share the excitement of the latest developments in planetary science, and can significantly enhance visibility and public engagement in missions of exploration.

LPMM↗

NASA NTRSDate not supplied

Using OPeNDAP In The Cloud to Connect NASA Data Centers and Support Open Data Access

NASA DAACs (Distributed Active Archive Centers), including the Goddard Earth Sciences Data Information and Services Center (GES DISC), are currently transitioning from on-premises servers to a shared Earthdata Cloud in order to build more interoperability, cross-collaboration, and streamlined services between their data centers. Migrating its on-premises OPeNDAP service to the cloud is a critical component of making this interconnectedness between NASA DAACs possible. To improve their cloud services, GES DISC is leveraging open-source platforms like Github to collect user feedback, create use cases, and develop resources to enable real-time learning for users about OPeNDAP in the cloud. This presentation gives an overview of the OPeNDAP in the cloud, resources developed to access this service, and considerations for improved user guidance and experience to further support NASA's commitment to the Open-Source Science Initiative (OSSI).

Christopher Battisto↗

DOE OSTI2025

Enzyme Engineering Database (EnzEngDB): a platform for sharing and interpreting sequence–function relationships across protein engineering campaigns

The discovery and engineering of new enzymes is important across the bioeconomy, with diverse applications from foods to pharmaceuticals, sensors to agriculture. However, enzyme engineering, in particular machine learning-guided engineering, is hampered by a lack of data. Currently there exists no database designed to capture and interpret datasets created in this domain, nor are there easy analysis and visualisation tools. We developed the Enzyme Engineering Database to provide a centralized resource and an online analysis tool to consolidate sequence-function data from enzyme engineering campaigns, thereby making three contributions: (i) a database into which researchers can deposit public data, (ii) visualisation and analysis tools for protein engineers to analyse their own data or compare enzyme variants to other engineering campaigns, and (iii) a gold-standard dataset for benchmarking automated extraction along with the first large language model extraction pipeline specific for enzyme engineering campaigns. The Enzyme Engineering Database is accessible at http://enzengdb.org/.

Long, Yueming [California Institute of Technology ↗

NASA NTRS1990

Failure analysis and modeling of a VAXcluster system

This paper discusses the results of a measurement-based analysis of real error data collected from a DEC VAXcluster multicomputer system. In addition to evaluating basic system dependability characteristics such as error and failure distributions and hazard rates for both individual machines and for the VAXcluster, reward models were developed to analyze the impact of failures on the system as a whole. The results show that more than 46 percent of all failures were due to errors in shared resources. This is despite the fact that these errors have a recovery probability greater than 0.99. The hazard rate calculations show that not only errors, but also failures occur in bursts. Approximately 40 percent of all failures occur in bursts and involved multiple machines. This result indicates that correlated failures are significant. Analysis of rewards shows that software errors have the lowest reward (0.05 vs 0.74 for disk errors). The expected reward rate (reliability measure) of the VAXcluster drops to 0.5 in 18 hours for the 7-out-of-7 model and in 80 days for the 3-out-of-7 model.

Tang, Dong↗