Fusion constructs as protein over-expression vectors
This invention provides compositions and methods for providing high product yield of transgenes expressed in cyanobacteria and microalgae.
Melis, Anastasios↗
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Results for “Microalgae”
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Enzymatic digestion of microalgal biomass for lipid, sugar, and protein recovery
Methods for the recovery of lipids, sugars, and proteins from microbial biomass by enzymatic digestion are disclosed. The methods involve treating microalgae with a fungal acid protease, or with a mixture of at least one protease and at least one amylase.
Vadlamani, Agasteswar↗
CO2U Example Report: NETL CO2 to Renewable Diesel and Co-products via Algal Production
This report represents an example of a completed project for the CO2 Utilization program. The LCA for this example corresponds to the example product systems in the NETL openLCA Life Cycle Inventory (LCI) database. This example LCA represents a fictional microalgae-to-biofuel, hereafter called algae-to-biofuel, technology pathway.
Krynock, Michelle↗
Recent Advances in Picochlorum renovo Strain Development
Microalgae are amongst the most efficient phototrophs for the reduction of CO2 to industrially relevant products and product intermediates. We have recently identified a novel species in the genus Picochlorum (Picochlorum renovo) that demonstrates high areal productivity (>30 g/m2/day), high temperature and salinity tolerances, and rapid growth rate (-2 hour doubling time): attributes essential for economically viable industrial scale deployment for low value commodities (e.g. fuel and chemical precursors). Following screening of >300 algal isolates to identify Picochlorum renovo, we developed baseline genetic tools necessary for genetic engineering of the nucleus and chloroplast, and further built upon these tools to establish a protein secretion system. We have also deployed genetic engineering tools to establish the utilization of phosphite as a selectable marker in the chloroplast and nuclear genomes, while concurrently acting as a potential crop protection strategy. We have further implemented these tools to enable the utilization of formate as a novel carbon source for phototroph cultivation. Explicitly, formate toxicity was assayed, followed by introduction of a formate dehydrogenase to allow formate utilization. Cultures supplemented with formate grew to a higher density when cultivated under ambient CO2, highlighting the potential for this strategy to increase growth. Additionally, we have established a synthetic transcription factor and core promoter system which lays the foundation for tunable, high expression engineering in the nuclear genome, and potentially can be applied for universal algal genetic engineering. Finally, current work has focused on direct photosynthetic production of chemicals, and generation of mutant libraries. Combined, our work has established a robust genetic toolbox for Picochlorum renovo, which we have deployed for strain development purposes to introduce biotechnologically relevant traits.
algae↗
Fusion constructs as protein over-expression vectors
This invention provides compositions and methods for providing high product yield of transgenes expressed in cyanobacteria and microalgae.
Melis, Anastasios↗
Method and system for membrane carbonation
Disclosed herein are methods and systems for membrane carbonation for cultivating microalgae and other microorganisms that utilize a gaseous substrate, as well as to upgrade the quality of mixed-gas streams.
Rittmann, Bruce↗
Reliability metrics and their management implications for open pond algae cultivation
The prevalence of contaminating organisms in outdoor algae cultivation, with the often-associated dramatic crop failures, necessitates the need for metrics describing production system reliability. Standard metrics for algae cultivation reliability are critically needed to be able to map improvements in operational parameters, but do not currently exist. In this work, we present a set of standard metrics including mean time to failure (MTTF) and mean time between failures (MTBF) as the basis for the calculation of pond failure rate (FR) and reliability coefficient (RC). Metrics associated with the numbers of contaminating organisms such as abundance ratio (AR), prevalence of infection (PI), and mean intensity of infection (MII) are also relevant. These metrics, based on measured experimental values of outdoor pond performance during the Algae Testbed Public-Private Partnership (ATP3) Unified Field Studies (UFS), provide a basis for quantifying pond failure and provide insight into potential pond management and contaminant mitigation strategies. From these reliability metrics applied to this dataset, we are able to link operational parameters, such as harvest frequency and inoculum source, to pond reliability for different algae strains and seasons, and from an assessment of AR, provide contamination thresholds beyond which a culture may be unrecoverable. Ultimately, the implementation of widely-practiced and simple-to-calculate algae pond reliability metrics calculated from rapid and easy to collect data or observations will reduce risk and uncertainty in large-scale algae deployment and aid in the development of integrated pest management (IPM) strategies.
09 BIOMASS FUELS↗
Improved high-throughput screening technique to rapidly isolate Chlamydomonas transformants expressing recombinant proteins
Abstract The single-celled eukaryotic green alga Chlamydomonas reinhardtii has long been a model system for developing genetic tools for algae, and is also considered a potential platform for the production of high-value recombinant proteins. Identifying transformants with high levels of recombinant protein expression has been a challenge in this organism, as random integration of transgenes into the nuclear genome leads to low frequency of cell lines with high gene expression. Here, we describe the design of an optimized vector for the expression of recombinant proteins in Chlamydomonas , that when transformed and screened using a dual antibiotic selection, followed by screening using fluorescence activated cell sorting (FACS), permits rapid identification and isolation of microalgal transformants with high expression of a recombinant protein. This process greatly reduces the time required for the screening process, and can produce large populations of recombinant algae transformants with between 60 and 100% of cells producing the recombinant protein of interest, in as little as 3 weeks, that can then be used for whole population sequencing or individual clone analysis. Utilizing this new vector and high-throughput screening (HTS) process resulted in an order of magnitude improvement over existing methods, which normally produced under 1% of algae transformants expressing the protein of interest. This process can be applied to other algal strains and recombinant proteins to enhance screening efficiency, thereby speeding up the discovery and development of algal-derived recombinant protein products. Key points • A protein expression vector using double-antibiotic resistance genes was designed • Double antibiotic selection causes fewer colonies with more positive for phenotype • Coupling the new vector with FACS improves microalgal screening efficiency > 60%
59 BASIC BIOLOGICAL SCIENCES↗
Challenges, progress, and future perspectives for cyanobacterial polyhydroxyalkanoate production
Polyhydroxyalkanoates (PHA) are a promising bio-based alternative to traditional plastics derived from petroleum. Cyanobacteria are photosynthetic organisms that produce PHA from CO 2 and sunlight, which can potentially reduce production costs and environmental footprint in comparison to heterotrophic bacteria cultures because (1) they utilize inorganic carbon sources for growth and (2) they do not require intensive aeration for oxygenation. Moreover, supplementing precursors such as propionate, acetate, valerate, etc., can be used to obtain various copolymers with plastic customizable properties in comparison to the classical homopolymers, such as polyhydroxybutyrate, PHB. This critical review covers the latest advances in PHA production, including recent discoveries in the metabolism interplay between PHA and glycogen production, and new insights into cultivation strategies that enhance PHA accumulation, and purification processes. This review also addresses the challenges and suggests potential solutions for a viable industrial PHAs production process.
59 BASIC BIOLOGICAL SCIENCES↗
Towards an Integrated Process for CO 2 Capture and Utilization: Cultivation of Scenedesmus acutus Using Gaseous CO 2 and NH 3
Integrating CO 2 scrubbing from flue gas with its utilization in algae cultivation represents a potential means of lowering the cost of CO 2 capture. Towards this goal, this study sought to assess the feasibility of using gaseous a CO 2 /NH 3 stream, derived from CO 2 capture using aqueous ammonia, as a C- and N-source for algae cultivation. Scenedesmus acutus was cultured in 800 mL photobioreactors using gaseous CO 2 /NH 3 in mole ratios varying from 7 to 18. Excellent growth of Scenedesmus acutus was observed, the average growth rate for CO 2 /NH 3 = 10 of 0.171 ± 0.015 g/L·day exceeding that obtained using 1% CO 2 /N 2 and urea as the N-source (0.099 ± 0.28 g/L·day). Under optimal growth conditions (CO 2 /NH 3 mole ratio of 10), CO 2 utilization ranged from 57% to 72%, while the NH 3 utilization was >90%. The CO 2 /NH 3 feed rate was also found to exert a significant effect on algae productivity, excessive feed rates leading to accumulation of NH 3 in the culture at concentrations that were toxic to the algae. Consequently, to avoid the toxic effects of high NH 3 concentrations (>2.0 mM), it proved necessary to balance the NH 3 supply with the algae growth rate so that excessive NH 3 accumulation was prevented. This indicates that for practical applications, a CO 2 /NH 3 feed control strategy would be required that takes into account the ammonium ion concentration in solution and the pH so as to avoid significant concentrations of free NH 3 . Furthermore, analysis of the harvested biomass revealed a high protein (≥ 47 wt%) and a low ash content (< 3.6 wt%), suggesting it would be well suited for use as animal feed or as a feedstock for the production of bioplastics.
03 NATURAL GAS↗
Reused cultivation water from a self-inhibiting alga does not inhibit other algae but alters their microbiomes
Economical production of algal commodities (food, feed, and fuels) requires reusing cultivation water to reduce operating costs. While some algae strains show growth inhibition in reused water, other strains appear un-affected. Reusing water to grow different strains (i.e., crop rotation) could potentially improve overall biomass production compared to water reuse with the same strain by reducing accumulation of strain-specific waste products, limiting carryover of population-specific pathogens such as viruses, and introducing bacteria that degrade residual organic matter. Here, batch culture experiments tested the effects of reused cultivation water from the self-inhibiting diatom Staurosira sp. C323 on the diatom Navicula sp. SFP and green alga Chlorella sp. D046, as well as their microbiomes. Navicula sp. and Chlorella sp. grew well in Staurosira sp. reused water, indicating that previously observed self-inhibition was likely specific to this Staurosira strain. While algal mi-crobiomes were not significantly different between controls and reused water treatments, specific bacteria taxa were differentially abundant in reused treatments, suggesting that some taxa responded to compounds re-maining in the reused water. Finally, results suggest that algae growth responses in reused water may depend largely on strain-specific factors, and that crop rotation can support biomass production.
09 BIOMASS FUELS↗
Improved CO 2 utilization efficiency using membrane carbonation in outdoor raceways
Membrane carbonation, the delivery of CO 2 by diffusion through non-porous hollow fiber membranes, was successfully integrated into outdoor raceways (5.6 m 2 , 900 L) and operated continuously for up to 45 days. Biomass productivity associated with membrane carbonation was similar to using traditional sparging, but the average carbon utilization efficiencies for membrane carbonation was 3-fold higher than for sparging when 100% CO 2 was delivered to both systems. Here, when the pH setpoint was 8.5, growth on ammonium bicarbonate using membrane carbonation achieved a carbon utilization efficiency of 106 ± 45% due to uptake of some carbon from bicarbonate. Using nitrate as the N source had a 78 ± 55% carbon utilization efficiency, due to dissolved inorganic carbon accumulation as the medium alkalinity increased. Lowering the pH setpoint to 8.0 created a carbon-rich environment that decreased the carbon utilization efficiency to 51 ± 27% due to CO 2 off-gassing, but it still was 3-fold higher than with sparging.
54 ENVIRONMENTAL SCIENCES↗
A validated thermal and biological model for predicting algal productivity in large scale outdoor cultivation systems
Proper assessment of the sustainability of algal products requires an understanding of algal growth rate with regional and temporal resolution. This study developed a bulk growth model that utilizes geospatial data, reactor geometry inputs, and a maximum of six strain-specific parameters to predict algal productivity with temporal and regional resolution. The model requires local weather data to calculate the time-resolved culture temperature which is combined with a biological model based on maximum theoretical carbon fixation to predict the time-resolved algal concentration. Validation of the model against experimental data illustrates an average ac- curacy of 0.27% ± 5.32% when comparing algal concentration at harvest over 45 days of cultivation data for Galdieria sulphuraria 5587.1, and Galdieria sulphuraria Soos grown in photobioreactors (PBRs) in Mesa, AZ (33.4152° N, 111.8315° W). For open raceway ponds (ORPs), an accuracy of 0.9% ± 2.35% was achieved when comparing algal concentration at harvest over 50 days of cultivation data for Chlorella vulgaris, Desmodesmus intermedius, Nannochloropsis oceanica grown in Atlanta, GA (33.7490° N, 84.3880° W) and Mesa, AZ (33.4152° N, 111.8315° W). The validation trials spanned three seasons (winter, spring, and summer) to ensure model ac- curacy throughout the year, and concentration between harvests was modeled with hourly resolution. The validated model is used to assess the productivity at several case-study locations in the United States with Chlorella vulgaris, grown in open raceway ponds and Galdieria sulphuraria grown in vertical flat panel photo- bioreactors. In conclusion, the model has been published as an open-source tool, in an effort to increase the fidelity of future studies that rely on outdoor algae cultivation for feedstock production and allow for time resolved results for future techno-economic and life cycle assessments.
59 BASIC BIOLOGICAL SCIENCES↗
Quantifying the intrinsic value of algal biomass based on a multi-product biorefining strategy
Not Available
09 BIOMASS FUELS↗
The algal microbiome protects Desmodesmus intermedius from high light and temperature stress
The mutualistic impacts of bacterial communities on algal growth and biomass accumulation are well documented, but it is unknown how temperature and light stress influence these mutualistic interactions. Here, we generated a bacteria-free (axenic) culture of the green alga Desmodesmus intermedius C046 and compared its growth and yield in the laboratory to its native xenic counterpart - featuring a microbiome that has been maintained with its algal host for at least 5 years – under unstressed and high light, high temperature stress conditions. We then added exogenous microbiomes from high light marine environments to the axenic culture to quantify the contribution of these newly generated microbial consortia in improving D. intermedius growth, yield, and resilience to high light and heat. The native microbiome increased growth and biomass accumulation, under both unstressed and stressed conditions. Three of the five newly derived microbiomes had increased growth compared to the axenic and negligible, decreased, or increased growth impacts compared to the xenic culture. Stress conditions led to decreased algal exudation, larger algal cells when grown alone, but smaller algal cells with an associated microbiome. In conclusion, our results suggest that the algal microbiome plays a role in microalgal response to heat and light stress, and efforts for screening new algal strains for high biomass productivity under those stress conditions should include a strategy for microbiome optimization.
59 BASIC BIOLOGICAL SCIENCES↗
Persistence of bacterial-mediated anti-rotifer protection in preliminary outdoor cultivation trial for Microchloropsis salina
Outdoor algal cultivation systems are susceptible to a wide variety of deleterious species. In previously published studies, we observed protection using microbial consortia at laboratory scale cultures; Microchloropsis salina in the presence of microbial consortia were protected from grazing from the marine rotifer, Brachionus plicatilis. Our objective for the present work was to determine if this protection conferred by microbial consortia in controlled laboratory experiments would persist in an open, outdoor multi-liter cultivation system. We found that algal protection did persist as evidenced by the presence of fewer motile rotifers and decreased rotifer-associated egg counts for the consortia-treated outdoor cultures. Due to the low temperature and light conditions that reduced growth of the algae outdoors, we performed an indoor laboratory assay which also confirmed the persistence of algal protection. Lastly, the lower numbers of motile rotifers and fewer rotifer-associated eggs in the consortia-treated algal cultures suggests a possible protective mechanism by the consortia through interfering with the rotifer lifecycle or reproduction. Finally, these initial results support the possibility that low cost, prophylactic treatments with microbial consortia can protect algae from deleterious species in outdoor cultivation systems.
59 BASIC BIOLOGICAL SCIENCES↗