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At least 289 records · Page 16

Near, far, wherever you are: simulations on the dose efficiency of holographic and ptychographic coherent imaging

Different studies in X-ray microscopy have arrived at conflicting conclusions about the dose efficiency of imaging modes involving the recording of intensity distributions in the near (Fresnel regime) or far (Fraunhofer regime) field downstream of a specimen. A numerical study is presented on the dose efficiency of near-field holography, near-field ptychography and far-field ptychography, where ptychography involves multiple overlapping finite-sized illumination positions. Unlike what has been reported for coherent diffraction imaging, which involves recording a single far-field diffraction pattern, it is found that all three methods offer similar image quality when using the same fluence on the specimen, with far-field ptychography offering slightly better spatial resolution and a lower mean error. These results support the concept that (if the experiment and image reconstruction are done properly) the sample can be near or far; wherever you are, photon fluence on the specimen sets one limit to spatial resolution.

42 ENGINEERING↗

Ring artifact reduction via multiscale nonlocal collaborative filtering of spatially correlated noise

X-ray micro-tomography systems often suffer severe ring artifacts in reconstructed images. These artifacts are caused by defects in the detector, calibration errors, and fluctuations producing streak noise in the raw sinogram data. In this work, these streaks are modeled in the sinogram domain as additive stationary correlated noise upon logarithmic transformation. Based on this model, a streak removal procedure is proposed where the Block-Matching and 3-D (BM3D) filtering algorithm is applied across multiple scales, achieving state-of-the-art performance in both real and simulated data. Specifically, the proposed fully automatic procedure allows for attenuation of streak noise and the corresponding ring artifacts without creating major distortions common to other streak removal algorithms.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Ring artifact and Poisson noise attenuation via volumetric multiscale nonlocal collaborative filtering of spatially correlated noise

X-ray micro-tomography systems often suffer from high levels of noise. In particular, severe ring artifacts are common in reconstructed images, caused by defects in the detector, calibration errors, and fluctuations producing streak noise in the raw sinogram data. Furthermore, the projections commonly contain high levels of Poissonian noise arising from the photon-counting detector. This work presents a 3-D multiscale framework for streak attenuation through a purposely designed collaborative filtering of correlated noise in volumetric data. A distinct multiscale denoising step for attenuation of the Poissonian noise is further proposed. By utilizing the volumetric structure of the projection data, the proposed fully automatic procedure offers improved feature preservation compared with 2-D denoising and avoids artifacts which arise from individual filtering of sinograms.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

HYPPO: A Surrogate-Based Multi-Level Parallelism Tool for Hyperparameter Optimization

We present a new software, HYPPO, that enables the automatic tuning of hyperparameters of various deep learning (DL) models. Unlike other hyperparameter optimization (HPO) methods, HYPPO uses adaptive surrogate models and directly accounts for uncertainty in model predictions to find accurate and reliable models that make robust predictions. Using asynchronous nested parallelism, we are able to significantly alleviate the computational burden of training complex architectures and quantifying the uncertainty. HYPPO is implemented in Python and can be used with both TensorFlow and PyTorch libraries. We demonstrate various software features on time-series prediction and image classification problems as well as a scientific application in computed tomography image reconstruction. Finally, we show that (1) we can reduce by an order of magnitude the number of evaluations necessary to find the most optimal region in the hyperparameter space and (2) we can reduce by two orders of magnitude the throughput for such HPO process to complete.

adaptation models↗

SGD-Net: Efficient Model-Based Deep Learning with Theoretical Guarantees

Deep unfolding networks have recently gained popularity for solving imaging inverse problems. However, the computational and memory complexity of data-consistency layers within traditional deep unfolding networks scales with the number of measurements, limiting their applicability to large-scale imaging inverse problems. We propose SGD-Net as a new methodology for improving the efficiency of deep unfolding through stochastic approximations of the data-consistency layers. Our theoretical analysis shows that SGD-Net can be trained to approximate batch deep unfolding networks to an arbitrary precision. Our simulations on intensity diffraction tomography and sparse-view computed tomography show that SGD-Net can match the performance of the traditional batch network at a fraction of training and testing complexity.Deep unfolding networks have recently gained popularity for solving imaging inverse problems. However, the computational and memory complexity of data-consistency layers within traditional deep unfolding networks scales with the number of measurements, limiting their applicability to large-scale imaging inverse problems. We propose SGD-Net as a new methodology for improving the efficiency of deep unfolding through stochastic approximations of the data-consistency layers. Our theoretical analysis shows that SGD-Net can be trained to approximate batch deep unfolding networks to an arbitrary precision. Our simulations on intensity diffraction tomography and sparse-view computed tomography show that SGD-Net can match the performance of the traditional batch network at a fraction of training and testing complexity.

97 MATHEMATICS AND COMPUTING↗

Design-to-Deployment Continuum Platform for Microscopes and Computing Ecosystems

Science ecosystems with networked computing systems and physical instruments are increasingly being deployed with a goal to achieve the productivity promised by AI-supported remote automation. In support of these efforts, the virtual infrastructure twins (VITs) have been successfully utilized to develop the orchestration codes for these ecosystems without requiring physical access to expensive instruments, such as electron microscopes. Currently, the utility of such a VIT is severely limited by the computing capacity and capability of the computing system used as its host. Furthermore, codes developed on the VIT typically need to be transferred and refactored for production use, particularly, on high-performance systems with accelerators. In response, we develop a design-to-deployment continuum platform wherein a VIT runs natively on the ecosystem's own computing system, and thereby facilitates the continual in-situ testing and transition of codes for production use. Here, we describe the development and testing of software for remote microscope steering and GPU-based image reconstruction using this platform on a multi-GPU computing system networked to Nion microscopes. We demonstrate a continual transition of steering and reconstruction codes developed under VIT platform to production ecosystem deployment.

Al-Najjar, Anees [Oak Ridge National Laboratory (O↗

Efficient and Flexible Sensitivity Matrix Computation for Adaptive Electrical Capacitance Volume Tomography

Electrical capacitance tomography is a widely used sensor modality for flow imaging in many industrial settings. Adaptive Electrical Capacitance Volume Tomography (AECVT) extends the capabilities of traditional ECT by enabling direct volumetric imaging and an improved resolution. Construction of the sensitivity matrix is a necessary step to obtain flow images. This step requires computation of the electric field inside the sensing domain, which is done via a typical field solver such as the finite element method. In this work, we present an efficient and flexible method to construct the sensitivity matrix for Adaptive Electrical Capacitance Volume Tomography (AECVT) based on individual electrode segment excitations and their judicious combination to form desired matrix elements. We illustrate how the proposed method yields the same sensitivity matrix as the traditional method but at a much lower computational cost. Once all segment contributions are obtained, we also indicate how the proposed method, unlike the traditional approach, can generate the sensitivity matrix on demand for an arbitrary combination of synthetic electrodes and obviating the need for any additional field computations. Finally, we present image reconstruction results for two different experimental scenarios where the mutual capacitance data and the corresponding sensitivity vectors are obtained through the proposed measurement combination scheme.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

High-resolution 3D microwave imaging using an optically tracked linear array

Active three-dimensional microwave or millimeter-wave imaging is typically performed using a linear array that is mechanically scanned over a uniform planar or cylindrical aperture. However, an image can also be formed with a linear array that is scanned over a non-uniform irregular aperture. This requires that the precise position of the array be known for each radar sample. This paper explores high-resolution 3D microwave imaging of stationary targets using an optically tracked manually scanned linear array. The image reconstruction techniques necessary to account for a non-uniform irregular aperture are also developed.

Clark, Richard T.↗

The Mertens Unrolled Network (MU-Net): A High Dynamic Range Fusion Neural Network for Through the Windshield Driver Recognition

Face recognition of vehicle occupants through windshields in unconstrained environments poses a number of unique challenges ranging from glare, poor illumination, driver pose and motion blur. In this paper, we further develop the hardware and software components of a custom vehicle imaging system to better overcome these challenges. After the build out of a physical prototype system that performs High Dynamic Range (HDR) imaging, we collect a small dataset of through-windshield image captures of known drivers. We then reformulate the classical Mertens-Kautz-Van Reeth HDR fusion algorithm as a pre-initialized neural network, which we name the Mertens Unrolled Network (MU-Net), for the purpose of fine-tuning the HDR output of through-windshield images. Reconstructed faces from this novel HDR method are then evaluated and compared against other traditional and experimental HDR methods in a pre-trained state-of-the-art (SOTA) facial recognition pipeline, verifying the efficacy of our approach.

Ruby, Max↗

Defect identification in simulated Bragg coherent diffraction imaging by automated AI

X-ray Bragg coherent diffraction imaging is a powerful technique for operando and in situ materials characterization and provides a unique means of quantifying the influence of one-dimensional (1D) and two-dimensional (2D) material defects on material response. However, obtaining full images from raw x-ray diffraction data is nontrivial and computationally intensive, precluding real-time experimental feedback. Here, we present a machine learning approach to identify the presence of crystalline line defects (edge and screw) in samples from the raw, 2D, coherent diffraction data without the need for image reconstruction through iterative phase retrieval. Further, we compare different approaches to designing neural networks for this application and demonstrate the potential of automated ML (autoML) approaches.

36 MATERIALS SCIENCE↗

SQMS Quantum R&D in Machine Learning, Optimization and Sensing beyond Fundamental Physics Applications

This newly formed team at SQMS under the Ecosystem Thrust is looking to develop capabilities impacting societal advances outside the core domain of HEP and condensed matter physics. We explicitly leverage the experimental and algorithmic innovations developed across all groups as well as connect to broad-scope external projects of the diverse team of PIs. As the inaugural set of projects, we are studying numerically quantum machine learning models inspired by efficiently trainable echo-state and orthogonal neural networks and developing designs for related experiments to be performed on quantum processors based on SQMS SRF cQED technology and Rigetti s transmon arrays. Investigated models exploit ideas and lessons learned from multiple prior work by SQMS team members in a variety of internal and external activities [R1]. Target initial applications include noisy signal processing, potentially captured by quantum sensors or noisy QPUs, as well as simulation and classification of healthcare data. For instance, image reconstruction of the brain s electrical properties by solving the inverse Maxwell equation problem with uncertainty [R2] through a hybrid quantum-classical physics-informed architecture for time-dependent processes [R3]. The group is also investigating the application and development of novel quantum sensors based on magnetic levitation of a superconducting sphere coupled to a superconducting qubit. This coupling enables high-precision measurements of the position of the sphere, which can be used for sensitive detection of forces, enabling practical applications such as gravimetry for geophysics analysis, or accelerometry for GPS-denied navigation [R4] [R1] Rieffel, Eleanor G., Ata Akbari Asanjan, M. Sohaib Alam, Namit Anand, David E. Bernal Neira, Sophie Block, Lucas T. Brady et al. "Assessing and advancing the potential of quantum computing: A NASA case study." Future Generation Computer Systems (2024). [R2] Yu, X., Serrall s, J.E., Giannakopoulos, I.I., Liu, Z., Daniel, L., Lattanzi, R. and Zhang, Z., 2023. Pifon-ept: Mr-based electrical property tomography using physics-informed fourier networks. IEEE Journal on Multiscale and Multiphysics Computational Techniques. [R3] Wudarski, Filip, Daniel OConnor, Shaun Geaney, Ata Akbari Asanjan, Max Wilson, Elena Strbac, P. Aaron Lott, and Davide Venturelli. "Hybrid quantum-classical reservoir computing for simulating chaotic systems." arXiv preprint arXiv:2311.14105 (2023). [R4] Higgins, Gerard, Saarik Kalia, and Zhen Liu. "Maglev for dark matter: Dark-photon and axion dark matter sensing with levitated superconductors." Physical Review D 109.5 (2024): 055024.

Venturelli, Davide↗

Poisson-response Tensor-on-Tensor Regression and Applications

We introduce Poisson-response tensor-on-tensor regression (PToTR), a novel regression framework designed to handle tensor responses composed element-wise of random Poisson-distributed counts. Tensors, or multi-dimensional arrays, composed of counts are common data in fields such as inter national relations, social networks, epidemiology, and medical imaging, where events occur across multiple dimensions like time, location, and dyads. PToTR accommodates such tensor responses alongside tensor covariates, providing a versatile tool for multi dimensional data analysis. We propose algorithms for maximum likelihood estimation under a canonical polyadic (CP) structure on the regression coefficient tensor that satisfy the positivity of Poisson parameters and then provide an initial theoretical error analysis for PToTR estimators. We also demonstrate the utility of PToTR through three concrete applications: longitudinal data analysis of the Integrated Crisis Early Warning System database, positron emission tomography (PET) image reconstruction, and change-point detection of communication patterns in longitudinal dyadic data. These applications highlight the versatility of PToTR in addressing complex, structured count data across various domains.

97 MATHEMATICS AND COMPUTING↗

PATOKA: Simulating Electromagnetic Observables of Black Hole Accretion

Abstract The Event Horizon Telescope (EHT) has released analyses of reconstructed images of horizon-scale millimeter emission near the supermassive black hole at the center of the M87 galaxy. Parts of the analyses made use of a large library of synthetic black hole images and spectra, which were produced using numerical general relativistic magnetohydrodynamics fluid simulations and polarized ray tracing. In this article, we describe the PATOKA pipeline, which was used to generate the Illinois contribution to the EHT simulation library. We begin by describing the relevant accretion systems and radiative processes. We then describe the details of the three numerical codes we use, iharm , ipole , and igrmonty , paying particular attention to differences between the current generation of the codes and the originally published versions. Finally, we provide a brief overview of simulated data as produced by PATOKA and conclude with a discussion of limitations and future directions.

79 ASTRONOMY AND ASTROPHYSICS↗

Circuit enhances vertical resolution in raster scanning systems

Circuit enhances vertical resolution in electron beam, raster scanning systems exhibiting aperture distortion in the vertical direction. A sensitized area /image/ produces a video output when the scan beam nears it, which causes vertical elongation in the reconstructed images of all sensitized areas on the surface.

Alsovsky, W. H.↗

An investigation of photosensor aperture shaping in facsimile cameras

Optical-mechanical scanning techniques are generally employed in instruments specifically designed to spectrally or radiometrically characterize variations in scene brightness. The effect of aliasing, which can be caused by line scan sampling, on the spatial detail of the reconstructed image has, therefore, been of little concern. Emphasis of some recent applications of optical-mechanical scanning techniques in facsimile cameras is, however, on the spatial characterization of the scene which, as is shown, can be severely degraded by aliasing. The characteristics of aliasing are analyzed to establish quantitative bounds, and photosensor aperture shaping and line scan spacing are investigated as a means for reducing this degradation.

Katzberg, S. J.↗

An analysis of the effect of aperture shapes in reducing facsimile camera aliasing.

Optical-mechanical scanning techniques are frequently employed in instruments specifically designed to spectrally or radiometrically characterize variations in scene brightness. The effect of line scan sampling on the spatial detail of the reconstructed images has, therefore, received little attention. Emphasis of some recent applications of optical-mechanical scanning techniques is, however, on the spatial characterization of the scene which, as is shown here, can be severely degraded by aliasing generated in common scanner designs. The characteristics of aliasing are analyzed to establish quantitative bounds, and photosensor aperture shaping and line scan spacing are investigated as a means for reducing this degradation.

Katzberg, S. J.↗

Some digital techniques for enhancing ERTS imagery

In addition to the use of simple contrast stretching to improve visibility of detail, axis rotation and ratioing have been found useful for certain applications. These processes allow a considerably greater contrast stretch than is possible on normal images, with consequent increased separability of different materials. They have inherent advantages over classifier techniques for geologic studies, as they allow the interpreter to take into account other factors such as context and structure before interpreting boundaries between units. Color images reconstructed from these pictures display color variations among various materials unattainable by any combination of normal photography.

Billingsley, F. C.↗