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At least 289 records · Page 16

Parts & Pools: A Framework for Modular Design of Synthetic Gene Circuits

Published in 2008, Parts & Pools represents one of the first attempts to conceptualize the modular design of bacterial synthetic gene circuits with Standard Biological Parts (DNA segments) and Pools of molecules referred to as common signal carriers (e.g., RNA polymerases and ribosomes). The original framework for modeling bacterial components and designing prokaryotic circuits evolved over the last years and brought, first, to the development of an algorithm for the automatic design of Boolean gene circuits. This is a remarkable achievement since gene digital circuits have a broad range of applications that goes from biosensors for health and environment care to computational devices. More recently, Parts & Pools was enabled to give a proper formal description of eukaryotic biological circuit components. This was possible by employing a rule-based modeling approach, a technique that permits a faithful calculation of all the species and reactions involved in complex systems such as eukaryotic cells and compartments. In this way, Parts & Pools is currently suitable for the visual and modular design of synthetic gene circuits in yeast and mammalian cells too.

60 APPLIED LIFE SCIENCES↗

RAVIS: Resource Forecast and Ramp Visualization for Situational Awareness of Variable Renewable Generation

The Resource Forecast and Ramp Visualization for Situational Awareness (RAVIS) is an innovative, open-source tool for visualizing variable renewable resource forecasts and alerts for significant up- and down-ramps in renewable generation and the consequent system net load. The modular dashboard of RAVIS contains configurable panes for viewing probabilistic time-series forecasts, ramp event alerts on the look-ahead timeline, and spatially resolved resource sites, and forecasts. For comprehensive situational awareness, the tool can add additional data layers from simulation and independent system operator (ISO) market clearing data---including electric line utilization, nodal price, and available generation flexibility---in response to continuously updated renewable forecasts. This paper introduces the RAVIS technology suite employed to provide optimum visualization and flexible design characteristics. The paper also illustrates some use cases of the tool using site-specific solar power forecast data obtained from the IBM Watt-Sun forecasting platform for the California ISO and Midcontinent ISO footprints. The source code for RAVIS is public (https://github.com/ravis-nrel/ravis), and the intended users are forecasters, utility planners, ISO operators, and researchers.

41 EE - Solar Energy Technologies Office (EE-4S)↗

RAVIS: Resource Forecast and Ramp Visualization for Situational Awareness of Variable Renewable Generation: Preprint

The Resource Forecast and Ramp Visualization for Situational Awareness (RAVIS) is an innovative, open-source tool for visualizing variable renewable resource forecasts and alerts for significant up- and down-ramps in renewable generation and the consequent system net load. The modular dashboard of RAVIS contains configurable panes for viewing probabilistic time-series forecasts, ramp event alerts on the look-ahead timeline, and spatially resolved resource sites, and forecasts. For comprehensive situational awareness, the tool can add additional data layers from simulation and independent system operator (ISO) market clearing data—including electric line utilization, nodal price, and available generation flexibility—in response to continuously updated renewable forecasts. This paper introduces the RAVIS technology suite employed to provide optimum visualization and flexible design characteristics. The paper also illustrates some use cases of the tool using site-specific solar power forecast data obtained from the IBM Watt-Sun forecasting platform for the California ISO and Midcontinent ISO footprints. The source code for RAVIS is public (https://github.com/ravis-nrel/ravis), and the intended users are forecasters, utility planners, ISO operators, and researchers.

41 EE - Solar Energy Technologies Office (EE-4S)↗

Overcoming the Critical Shortage of STEM - Prepared Secondary Students Through Modeling and Simulation

In developing understanding of technological systems - modeling and simulation tools aid significantly in the learning and visualization processes. In design courses we sketch , extrude, shape, refine and animate with virtual tools in 3D. Final designs are built using a 3D printer. Aspiring architects create spaces with realistic materials and lighting schemes rendered on model surfaces to create breathtaking walk-throughs of virtual spaces. Digital Electronics students design systems that address real-world needs. Designs are simulated in virtual circuits to provide proof of concept before physical construction. This vastly increases students' ability to design and build complex systems. We find students using modeling and simulation in the learning process, assimilate information at a much faster pace and engage more deeply in learning. As Pre-Engineering educators within the Career and Technical Education program at our school division's Technology Academy our task is to help learners in their quest to develop deep understanding of complex technological systems in a variety of engineering disciplines. Today's young learners have vast opportunities to learn with tools that many of us only dreamed about a decade or so ago when we were engaged in engineering and other technical studies. Today's learner paints with a virtual brush - scenes that can aid significantly in the learning and visualization processes. Modeling and simulation systems have become the new standard tool set in the technical classroom [1-5]. Modeling and simulation systems are now applied as feedback loops in the learning environment. Much of the study of behavior change through the use of feedback loops can be attributed to Stanford Psychologist Alfred Bandura. "Drawing on several education experiments involving children, Bandura observed that giving individuals a clear goal and a means to evaluate their progress toward that goal greatly increased the likelihood that they would achieve it."

Spencer, Thomas↗

Visualization and modeling of factors influencing visibility in computer-aided crewstation design

We have developed two modules for use in computer-aided design (CAD) of crewstation environments that enhance the designer's appreciation of factors influencing the pilot's vision and visual processing capacity. The Binocular Optics Module (BOM) is an interactive tool for visualizing geometric aspects of (1) how retinal imagery of the environment changes on the pilot's retinas under conditions of eye and object motion, and (2) how visual capabilities that can be modeled as regions or contours on the retinas, affect spatial perception of the environment. The Visual Performance Module (VPM) contains a signal processing model of human visual discrimination that quantitatively predicts visual discrimination performance. The outputs of the VPM are retinal contours that represent performance probabilities. These contours may be used as inputs to the BOM for visualizing those volumes of space within the crewstation that bound different levels of the pilot's of visual discrimination capability. Used together, the BOM and VPM provide the designer with the opportunity to interactively explore relationships between environmental retinal imagery and visual function, and the ability to factor the pilot's visual capabilities into the earliest phases of crewstation CAD.

Arditi, Aries↗

The vectorization of a ray tracing program for image generation

Ray tracing is a widely used method for producing realistic computer generated images. Ray tracing involves firing an imaginary ray from a view point, through a point on an image plane, into a three dimensional scene. The intersections of the ray with the objects in the scene determines what is visible at the point on the image plane. This process must be repeated many times, once for each point (commonly called a pixel) in the image plane. A typical image contains more than a million pixels making this process computationally expensive. A traditional ray tracing program processes one ray at a time. In such a serial approach, as much as ninety percent of the execution time is spent computing the intersection of a ray with the surface in the scene. With the CYBER 205, many rays can be intersected with all the bodies im the scene with a single series of vector operations. Vectorization of this intersection process results in large decreases in computation time. The CADLAB's interest in ray tracing stems from the need to produce realistic images of mechanical parts. A high quality image of a part during the design process can increase the productivity of the designer by helping him visualize the results of his work. To be useful in the design process, these images must be produced in a reasonable amount of time. This discussion will explain how the ray tracing process was vectorized and gives examples of the images obtained.

Plunkett, D. J.↗

Development of x-ray imaging technique for liquid screening at airport

X-ray imaging technology is a viable option to recognize flammable liquids for the purposes of aviation security. In this study, an X-ray imaging technology was developed whereby, the image viewing system was built with the use of a digital camera coupled with a gadolinium oxysulfide (GOS) fluorescent screen. The camera was equipped with a software for remote control setting of the camera via a USB cable which allows the images to be captured. The image was analysed to determine the average grey level using a software designed by Microsoft Visual Basic 6.0. The data was obtained for various densities of liquid thickness of 4.5 cm, 6.0 cm and 7.5 cm respectively for X-ray energies ranging from 70 to 200 kVp. In order to verify the reliability of the constructed calibration data, the system was tested with a few types of unknown liquids. The developed system could be conveniently employed for security screening in order to discriminate between a threat and an innocuous liquid.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Managed Development Environment Successes for MSFC's VIPA Team

This paper outlines the best practices of the Vehicle Design Team for VIPA. VIPA is the Vehicle Integrated Performance Analysis Team at MSFC. This team was created to reconnect the individual engineering disciplines to be able to perform system level technical assessments in support of program decisions. The functions of the VIPA Vehicle Design (VVD) discipline team are to maintain the controlled reference geometry and provide linked, simplified geometry for each of the other discipline analyses. The core of the VVD work, and the approach for VVD s first task of controlling the reference geometry, involves systems engineering, top-down, layout-based CAD modeling within a Product Data Manager (PDM) development environment. The topdown approach allcws for simple contrnl of very large, integrated assemblies and greatly enhances the ability to generate trade configurations and reuse data. The second W D task, model simplification for analysis, is handled within the managed environment through application of the master model concept. In this approach, there is a single controlling, or master, product definition dataset. Connected to this master model are reference datasets with live geometric and expression links. The referenced models can be for drawings, manufacturing, visualization, embedded analysis, or analysis simplification. A discussion of web based interaction, including visualization, between the design and other disciplines is included. Demonstrated examples are cited, including the Space Launch Initiative development cycle, the Saturn V systems integration and verification cycle, an Orbital Space Plane study, and NASA Exploration Office studies of Shuttle derived and clean sheet launch vehicles. The VIPA Team has brought an immense amount of detailed data to bear on program issues. A central piece of that success has been the Managed Development Environment and the VVD Team approach to modeling.

Finckenor, Jeff↗

Managed Development Environment Successes for MSFC's VIPA Team

This paper outlines the best practices of the Vehicle Design Team for VIPA. The functions of the VIPA Vehicle Design (VVD) discipline team are to maintain the controlled reference geometry and provide linked, simplified geometry for each of the other discipline analyses. The core of the VVD work, and the approach for VVD s first task of controlling the reference geometry, involves systems engineering, top-down, layout-based CAD modeling within a Product Data Manager (PDM) development environment. The top- down approach allows for simple control of very large, integrated assemblies and greatly enhances the ability to generate trade configurations and reuse data. The second VVD task, model simplification for analysis, is handled within the managed environment through application of the master model concept. In this approach, there is a single controlling, or master, product definition dataset. Connected to this master model are reference datasets with live geometric and expression links. The referenced models can be for drawings, manufacturing, visualization, embedded analysis, or analysis simplification. A discussion of web based interaction, including visualization, between the design and other disciplines is included. Demonstrated examples are cited, including the Space Launch Initiative development cycle, the Saturn V systems integration and verification cycle, an Orbital Space Plane study, and NASA Exploration Office studies of Shuttle derived and clean sheet launch vehicles. The VIPA Team has brought an immense amount of detailed data to bear on program issues. A central piece of that success has been the Managed Development Environment and the VVD Team approach to modeling.

Finckenor, Jeff↗

Multivariate volume visualization through dynamic projections

We propose a multivariate volume visualization framework that tightly couples dynamic projections with a high-dimensional transfer function design for interactive volume visualization. We assume that the complex, high-dimensional data in the attribute space can be well-represented through a collection of low-dimensional linear subspaces, and embed the data points in a variety of 2D views created as projections onto these subspaces. Through dynamic projections, we present animated transitions between different views to help the user navigate and explore the attribute space for effective transfer function design. Our framework not only provides a more intuitive understanding of the attribute space but also allows the design of the transfer function under multiple dynamic views, which is more flexible than being restricted to a single static view of the data. For large volumetric datasets, we maintain interactivity during the transfer function design via intelligent sampling and scalable clustering. As a result, using examples in combustion and climate simulations, we demonstrate how our framework can be used to visualize interesting structures in the volumetric space.

97 MATHEMATICS AND COMPUTING↗

Technical Specification IEC TS 62989:2018 - Primary Optics for Concentrator Photovoltaic Systems

The first edition of the Technical Specification (TS) on Primary Optics for Concentrator Photovoltaic (CPV) Systems, IEC TS 62989:2018, has been published by the International Electrotechnical Commission (IEC), on March 8th, 2018. TS 62989 covers aspects related to the primary optics including: product identification, optical characteristics, mechanical characteristics, materials, (design) geometry, and visual appearance. This paper focuses on the key aspects of the norm, including optical performance, in order to promote the awareness and use of the standard. We describe the three methods intended to measure the key optical characteristics of the primary elements, i.e. focal spot size and optical efficiency, by using the encircled energy. The three methods are using different light sources, optical components and receiver sensors, but yielded very similar results in a round robin test. This justifies the continued use of all three methods. The use of a website (opticstests.pbworks.com) for documentation of discussions and references was novel to the standard development. The website proved to be useful for the introduction of new members of the group. The website helped to keep track of changes to the document as well as the required actions of the project team.

14 SOLAR ENERGY↗

A Prediction Method for Catchment Efficiency Loss due to Coaxial Nozzle Wear in Powder Fed Directed Energy Deposition Systems

Abstract Powder fed laser directed energy deposition systems show significant promise and their widespread adoption could greatly advance manufacturing technology; however, a significant amount of gas atomized metal powder is wasted during material deposition. As contaminated powder must be collected and disposed of as hazardous waste, this process is often criticized for its low catchment efficiency. This presents potential implementation and scaling issues, as widespread use of this technology would directly increase the amount of contaminated powder in need of safe disposal. A direct contribution to this waste issue was identified in past work as wearing exterior and interior surfaces on a replaceable nozzle component within the additive head of such a system integrated into a hybrid manufacturing machine tool. A computational fluid dynamics simulation is developed specifically for use within the manufacturing process by predicting catchment efficiency losses before a deposition operation is performed. The model is robust enough to calculate a catchment efficiency estimate within a reasonable transition time before deposition and is designed to replace visual estimation of nozzle deterioration by the machine operator. Both of two previously identified wear modes are represented in the simulation. Their effects on powder stream geometry are discussed in detail and the results are compared with in-situ measurements of powder stream geometry and concentrations. The resulting work contributes to the growing understanding of using prediction and prevention methods on catchment efficiency related part defects within these systems.

DeWitte, Lisa↗

Big Data as a Service from an Urban Information System

Big Data has already proven itself as a valuable tool that lets geographers and urban researchers utilize large data re- sources to generate new insights. However, wider adoption of Big Data techniques in these areas is impeded by a number of difficulties in both knowledge discovery and data and sci- ence production. Typically users face such problems as dis- parate and scattered data, data management, spatial search- ing, insufficient computational capacity for data-driven anal- ysis and modelling, and the lack of tools to quickly visual- ize and summarize large data and analysis results. Here we propose an architecture for an Urban Information Sys- tem (UrbIS) that mitigates these problems by utilizing the Big Data as a Service (BDaaS) concept. With technolog- ical roots in High-performance Computing (HPC), BDaaS is based on the idea of outsourcing computations to dif- ferent computing paradigms, scalable to super-computers. UrbIS aims to incorporate federated metadata search, in- tegrated modeling and analysis, and geovisualization into a single seamless workflow. The system is under active devel- opment and is built around various emerging technologies that include hybrid and NoSQL databases, massively par- allel systems, GPGPU computing, and WebGL-based geo- graphic visualization. UrbIS is designed to facilitate using Big Data across multiple cities to better understand how ur- ban areas impact the environment and how climate change and other environmental change impact urban areas.

Sorokine, Alexandre↗

Structure Perception in 3D Point Clouds

Understanding human perception is critical to the design of effective visualizations. The relative benefits of using 2D versus 3D techniques for data visualization is a complex decision space, with varying levels of uncertainty and disagreement in both the literature and in practice. This study aims to add easily reproducible, empirical evidence on the role of depth cues in perceiving structures or patterns in 3D point clouds. We describe a method to synthesize a 3D point cloud that contains a 3D structure, where 2D projections of the data strongly resemble a Gaussian distribution. We performed a within-subjects structure identification study with 128 participants that compared scatterplot matrices (canonical 2D projections) and 3D scatterplots under three types of motion: rotation, xy-translation, and z-translation. We found that users could consistently identify three separate hidden structures under rotation, while those structures remained hidden in the scatterplot matrices and under translation. This work contributes a set of 3D point clouds that provide definitive examples of 3D patterns perceptible in 3D scatterplots under rotation but imperceptible in 2D scatterplots.

data analysis↗

Akuna

Akuna is a user environment that enables geoscientists to create conceptual models for subsurface investigations. These conceptual models can be augmented to create numerical models for specific subsurface simulators, and Akuna enables these simulations to be executed on supercomputers, and the results analyzed and visualized. Akuna is designed to easily support multiple subsurface simulators by using a novel, declarative approach that describes the specific features (input file formats, execution modes, output formats) of a simulator in an external data file, based on this data file, Akuna user interfaces are dynamically generated by Akuna, greatly reducing the effort and cost required to support a new simulator.

Source record↗

Global transpiration data from sap flow measurements: the SAPFLUXNET database

Plant transpiration links physiological responses of vegetation to water supply and demand with hydrological, energy, and carbon budgets at the land–atmosphere interface. However, despite being the main land evaporative flux at the global scale, transpiration and its response to environmental drivers are currently not well constrained by observations. Here we introduce the first global compilation of whole-plant transpiration data from sap flow measurements (SAPFLUXNET, https://sapfluxnet.creaf.cat/, last access: 8 June 2021). We harmonized and quality-controlled individual datasets supplied by contributors worldwide in a semi-automatic data workflow implemented in the R programming language. Datasets include sub-daily time series of sap flow and hydrometeorological drivers for one or more growing seasons, as well as metadata on the stand characteristics, plant attributes, and technical details of the measurements. SAPFLUXNET contains 202 globally distributed datasets with sap flow time series for 2714 plants, mostly trees, of 174 species. SAPFLUXNET has a broad bioclimatic coverage, with woodland/shrubland and temperate forest biomes especially well represented (80 % of the datasets). The measurements cover a wide variety of stand structural characteristics and plant sizes. The datasets encompass the period between 1995 and 2018, with 50 % of the datasets being at least 3 years long. Accompanying radiation and vapour pressure deficit data are available for most of the datasets, while on-site soil water content is available for 56 % of the datasets. Many datasets contain data for species that make up 90 % or more of the total stand basal area, allowing the estimation of stand transpiration in diverse ecological settings. SAPFLUXNET adds to existing plant trait datasets, ecosystem flux networks, and remote sensing products to help increase our understanding of plant water use, plant responses to drought, and ecohydrological processes. SAPFLUXNET version 0.1.5 is freely available from the Zenodo repository (https://doi.org/10.5281/zenodo.3971689; Poyatos et al., 2020a). The “sapfluxnetr” R package – designed to access, visualize, and process SAPFLUXNET data – is available from CRAN.

58 GEOSCIENCES↗

One-piece transparent shell improves design of helmet assembly

One-piece transparent helmet shell made of polycarbonate is equipped with a helmet protection pad, a visor assembly, a communications skull cap, and an emergency oxygen supply. This design offers improvements over previous designs in weight, visual field, comfort and protection.

Jones, R. L.↗