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At least 289 records · Page 16

Performance Optimization for Relative-Error-Bounded Lossy Compression on Scientific Data

Scientific simulations in high-performance computing (HPC) environments generate vast volume of data, which may cause a severe I/O bottleneck at runtime and a huge burden on storage space for postanalysis. Unlike traditional data reduction schemes such as deduplication or lossless compression, not only can error-controlled lossy compression significantly reduce the data size but it also holds the promise to satisfy user demand on error control. Pointwise relative error bounds (i.e., compression errors depends on the data values) are widely used by many scientific applications with lossy compression since error control can adapt to the error bound in the dataset automatically. Pointwise relative-error-bounded compression is complicated and time consuming. In this article, we develop efficient precomputation-based mechanisms based on the SZ lossy compression framework. Our mechanisms can avoid costly logarithmic transformation and identify quantization factor values via a fast table lookup, greatly accelerating the relative-error-bounded compression with excellent compression ratios. In addition, we reduce traversing operations for Huffman decoding, significantly accelerating the decompression process in SZ. Experiments with eight well-known real-world scientific simulation datasets show that our solution can improve the compression and decompression rates (i.e., the speed) by about 40 and 80 p, respectively, in most of cases, making our designed lossy compression strategy the best-in-class solution in most cases.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

Dynamic Virtual Chunks: On Supporting Efficient Accesses to Compressed Scientific Data

Data compression could ameliorate the I/O pressure of data-intensive scientific applications. Unfortunately, the conventional wisdom of naively applying data compression to the file or block brings the dilemma between efficient random accesses and high compression ratios. File-level compression barely supports efficient random accesses to the compressed data: any retrieval request need trigger the decompression from the beginning of the compressed file. Block-level compression provides flexible random accesses to the compressed blocks, but introduces extra overhead when applying the compressor to each and every block that results in a degraded overall compression ratio. This paper extends our prior work that introduces virtual chunks offering efficient random accesses to the compressed scientific data without sacrificing the compression ratio. Virtual chunks are logical blocks pointed at by appended references without breaking the physical continuity of the file content. These references allow the decompression to start from an arbitrary position (efficient random accesses), while no per-block overhead is introduced because the file’s physical entirety is retained (high compression ratio). One limitation of virtual chunk is it only supports static references. This paper presents the algorithms, analysis, and evaluations of dynamic virtual chunks to deal with the cases where the references are updated dynamically.

I/O compression performance optimization↗

In situ Raman spectroscopy of pressure-induced phase transformations in polycrystalline TbPO 4 , DyPO 4 , and Gd x Dy (1– x ) PO 4 [ In situ Raman spectroscopy of pressure-induced phase transformations in DyPO 4 and Gd x Dy (1– x ) PO 4 ]

Xenotime DyPO 4 and Gd x Dy (1–x) PO 4 (x = 0.4, 0.5, 0.6) (tetragonal I41amd zircon structure) have been studied at ambient temperature under high pressures inside a diamond anvil cell with in situ Raman spectroscopy. The typical Raman–active modes of the xenotime structure were observed at low pressures and the appearance of new Raman peaks at higher pressures indicated a phase transformation to a lower symmetry structure—likely monoclinic. Raman mode softening was observed, resulting in a line crossing at approximately 7–8 GPa for each material and preceding the phase transformation. The onset of phase transformation for DyPO 4 occurred at a pressure of 15.3 GPa. DyPO 4 underwent a reversible phase transformation and returned to the xenotime phase after decompression. The transformation pressures of the solid solutions (Gd x Dy (1–x) PO 4 ) were in the range 10–12 GPa. The GdxDy(1–x)PO 4 solid solutions yielded partially reversible phase transformations, retaining some of the high–pressure phase spectrum while reforming xenotime peaks during decompression. The substitution of Gd into DyPO 4 decreased the transformation pressure relative to pure DyPO 4 . In conclusion, the ability to modify the phase transformation pressures of xenotime rare–earth orthophosphates by chemical variations of solid solutions may provide additional methods to improve the performance of ceramic matrix composites.

36 MATERIALS SCIENCE↗

Stability Analysis of Inline ZFP Compression for Floating-Point Data in Iterative Methods

Currently, the dominating constraint in many high performance computing applications is data capacity and bandwidth, in both internode communications and even moreso in intranode data motion. A new approach to address this limitation is to make use of data compression in the form of a compressed data array. Storing data in a compressed data array and converting to standard IEEE-754 types as needed during a computation can reduce the pressure on bandwidth and storage. However, repeated conversions (lossy compression and decompression) introduce additional approximation errors, which need to be shown to not significantly affect the simulation results. Here, we extend recent work that analyzed the error of a single use of compression and decompression of the ZFP compressed data array representation to the case of time-stepping and iterative schemes, where an advancement operator is repeatedly applied in addition to the conversions. We show that the accumulated error for iterative methods involving fixed-point and time evolving iterations is bounded under standard constraints. An upper bound is established on the number of additional iterations required for the convergence of stationary fixed-point iterations. An additional analysis of traditional forward and backward error of stationary iterative methods using ZFP compressed arrays is also presented. The results of several 1D, 2D, and 3D test problems are provided to demonstrate the correctness of the theoretical bounds.

97 MATHEMATICS AND COMPUTING↗

Hydrodynamic and Longitudinal Impedance Analysis of Cerebrospinal Fluid Dynamics at the Craniovertebral Junction in Type I Chiari Malformation

Elevated or reduced velocity of cerebrospinal fluid (CSF) at the craniovertebral junction (CVJ) has been associated with type I Chiari malformation (CMI). Thus, quantification of hydrodynamic parameters that describe the CSF dynamics could help assess disease severity and surgical outcome. In this study, we describe the methodology to quantify CSF hydrodynamic parameters near the CVJ and upper cervical spine utilizing subject-specific computational fluid dynamics (CFD) simulations based on in vivo MRI measurements of flow and geometry. Hydrodynamic parameters were computed for a healthy subject and two CMI patients both pre- and post-decompression surgery to determine the differences between cases. For the first time, we present the methods to quantify longitudinal impedance (LI) to CSF motion, a subject-specific hydrodynamic parameter that may have value to help quantify the CSF flow blockage severity in CMI. In addition, the following hydrodynamic parameters were quantified for each case: maximum velocity in systole and diastole, Reynolds and Womersley number, and peak pressure drop during the CSF cardiac flow cycle. The following geometric parameters were quantified: cross-sectional area and hydraulic diameter of the spinal subarachnoid space (SAS). The mean values of the geometric parameters increased post-surgically for the CMI models, but remained smaller than the healthy volunteer. All hydrodynamic parameters, except pressure drop, decreased post-surgically for the CMI patients, but remained greater than in the healthy case. Peak pressure drop alterations were mixed. To our knowledge this study represents the first subject specific CFD simulation of CMI decompression surgery and quantification of LI in the CSF space. Further study in a larger patient and control group is needed to determine if the presented geometric and/or hydrodynamic parameters are helpful for surgical planning.

59 BASIC BIOLOGICAL SCIENCES↗

Eureka: Enabling Fine-Grained Access and Range Queries on Compressed Scientific Data via Data-Index Co-Compression

Handling large-scale scientific data in high-performance computing (HPC) environments poses significant challenges, including excessive I/O, high storage costs, and slow query performance. Traditional approaches often require full data decompression and scans, making them impractical for real-time or interactive analysis. To address these limitations, we introduce Eureka, a unified data-index co-compression framework that enables fine-grained access and efficient range queries on compressed scientific datasets. Eureka integrates spatial domain decomposition with block-wise error-bounded lossy compression to support selective decompression. It constructs a hierarchical AVL-tree index during compression to capture block-level value ranges, enabling fast pruning during query execution. To reduce metadata overhead, the index itself is also compressed while ensuring recall-preserving results. Experiments on six diverse HPC simulation datasets show that Eureka achieves up to 25x data compression and over 300x index compression, surpassing state-of-the-art compressors such as SZ3 and ZFP in rate-distortion performance. Additionally, Eureka delivers over 30x speedup for low-selectivity range queries, making it a scalable and efficient solution for modern scientific data analysis.

Yan, Ning↗

Leakage Risk Assessment of CO{sub 2} Transportation by Pipeline at the Illinois Basin Decatur Project, Decatur, Illinois

The Illinois Basin Decatur Project (IBDP) is designed to confirm the ability of the Mt. Simon Sandstone, a major regional saline-water-bearing formation in the Illinois Basin, to store 1 million tons of carbon dioxide (CO{sub 2}) injected over a period of three years. The CO{sub 2} will be provided by Archer Daniels Midland (ADM) from its Decatur, Illinois, ethanol plant. In order to transport CO{sub 2} from the capture facility to the injection well (also located within the ADM plant boundaries), a high-pressure pipeline of length 3,200 ft (975 m) has been constructed, running above the ground surface within the ADM plant footprint. We have qualitatively evaluated risks associated with possible pipeline failure scenarios that lead to discharge of CO{sub 2} within the real-world environment of the ADM plant in which there are often workers and visitors in the vicinity of the pipeline. There are several aspects of CO{sub 2} that make its transportation and potential leakage somewhat different from other substances, most notable is its non-flammability and propensity to change to solid (dry ice) upon strong decompression. In this study, we present numerical simulations using Computational Fluid Dynamics (CFD) methods of the release and dispersion of CO{sub 2} from individual hypothetical pipeline failures (i.e., leaks). Failure frequency of the various components of a pipeline transportation system over time are taken from prior work on general pipeline safety and leakage modeling and suggest a 4.65% chance of some kind of pipeline failure over the three-years of operation. Following the Precautionary Principle (see below), we accounted for full-bore leakage scenarios, where the temporal evolution of the mass release rate from the high-pressure pipeline leak locations was simulated using a state-of-the-art Pipe model which considers the thermodynamic effects of decompression in the entire pipeline. Failures have been simulated at four representative locations along the pipeline route within the ADM plant. Leakage scenarios at sites along the route of the pipeline, where plant operations (e.g., vehicular and train transportation) seem to present a higher likelihood of accidental failure, for example due to vehicles or equipment crashing into the pipeline and completely severing it, were modeled by allowing them to have a double source consistent with the pipeline releasing high-pressure CO{sub 2} from both ends of the broken pipe after a full-bore offset rupture. Simulation results show that the built environment of the plant plays a significant role in the dispersion of the gas as leaking CO{sub 2} can impinge upon buildings and other infrastructure. In all scenarios simulated, the region of very high-concentration of CO{sub 2} is limited to a small area around the pipeline failure, suggesting the likelihood of widespread harmful CO{sub 2} exposure to plant personnel from pipeline leakage is low. An additional risk is posed by the blast wave that emanates from a high-pressure pipeline when it is breached quickly. We estimate the blast wave risk as low because it occurs only for a short time in the immediate vicinity of the rupture, and requires an instantaneous large-scale rupture to occur. We recommend consideration of signage and guard rails and posts to mitigate the likelihood of vehicles crashing into the pipeline. A standardized emergency response plan applicable to capture plants within industrial sites could be developed based on the IBDP that would be useful for other capture plants. Finally, we recommend carrying out coupled wellbore-reservoir blowout scenario modeling to understand the potential for hazardous conditions arising from an unexpected blowout at the wellhead.

54 ENVIRONMENTAL SCIENCES↗

Video Compression Routines Final Report CRADA No. TSB-1183-95

The purpose of this CRADA was to establish a framework for LLNL and NOVA Management, Inc. to Cooperatively develop video compression routines to be used to condense maintenance documentation provided on computers issued to Army mechanics to help them diagnose and repair equipment faults. In the past, paper technical manuals were the only means of communicating fault isolation, diagnostics and repair action information to maintenance personnel. The need for this information was at the weapon system itself as well as at the maintenance depot. This project addressed the need for means of efficient storage and retrieval of video (bandwidth issue) by maintenance personnel as they moved through the diagnostic procedures. Several research and development projects have employed interactive stored video as a means of providing maintenance information to the soldier. The problem with this approach was the massive data storage requirement. The overall objective of the project was to develop fast decompression and playback routines for full motion, coIor video. A survey was done of existing standards and potential new routines and techniques for video compression and playback to determine which were suitable for use on the CTS. Playback speeds were preferred to beat 30 frames per second on the target architecture. Compression ratios were expected to store several minutes of synchronized video in 1 MB. Playback routines were Windows 3.1 compatible. Identification of any hardware upgrades associated with playback were made when necessary. A demonstration of existing LLNL algorithms for still frame decompression which represented a current benchmark of data compression performance was completed. NOVA Management and LLNL used some of the compression technologies developed or currently being developed at LLNL to address the requirements of this SBIR. LLNL started by evaluating current compression technologies or combinations thereof to estimate the best compression ratio LLNL could achieve at this stage. LLNL ported some of our software from the SUN workstation environment to the PC or equivalent environment (e.g., MAC) so as to closely match the computer environment suggested by the Army. Finally, LLNL designed and outlined new algorithms to meet the desired video compression of CTS.

97 MATHEMATICS AND COMPUTING↗

High Pressure Synthesis of New Magnets, Featuring Diamagnetic Sources of Anisotropy

Permanent magnets are the functional component of electric motors and generators found in numerous renewable energy applications spanning from regenerative brakes to wind turbines. Magnets that generate higher magnetic flux per volume are central to improved energy generation in these applications. To develop a new class of permanent magnets while retaining the properties conferred by rare-earth elements, a fundamentally different approach is required. We hypothesize that by engendering a covalent interaction between two elements, it will be possible to interact the two components of a magnetic moment—spin and orbital angular momentum—from two separate atoms to form a complete magnetic moment. This seed project focuses on the scale up of the compound FeBi 2 , which was initially synthesized in our laboratory. Scale up approaches include slow decompression, alternate synthetic routes, and using fabrication approaches to more intimately mix the precursor elements. We also pursued the synthesis of new phases in the Mn-Bi system targeted to create new magnetic materials. In our initial experiments we decompressed FeBi 2 down to 2.9 GPa, demonstrating a kinetic stability to the phase that enabled it to be recovered to an order of magnitude lower pressure than that needed to synthesize it (30 GPa). Our goal is to recover this exciting material to ambient pressures so that we can isolate samples for detailed physical properties measurements. We have undertaken three distinct approaches toward that goal, which we summarize below. Our two most notable results are the formation of a quenchable phase through antimony doping of FeBi 2 , and the development of a new approach to preparing samples for diamond anvil cell syntheses.

36 MATERIALS SCIENCE↗

Biological Response Models: Predicting Injury and Mortality of Fish During Downstream Passage through Hydropower Facilities

This report describes the U.S. Department of Energy’s HydroPASSAGE project efforts to develop and collect biological response models for integration into the Biological Performance Assessment (BioPA) toolset and the Hydropower Biological Evaluation Toolset (HBET). These models help understand how fish are likely to respond during dam passage when exposed to hydraulic and physical stressors associated with turbines and other hydropower structures. When fish pass through hydropower facilities, they may encounter several stressors, of which the three most common are collision, rapid decompression, and fluid shear. Specialized equipment has been used to develop 99 biological response models for exposure to blade strike, rapid decompression, or fluid shear. The models were gathered from the literature or developed as part of this effort and include models for 31 different species of fish that have various predicted endpoints (i.e., injury or mortality). Among these models, considerable variation in susceptibility to the stressors has been observed from one species to another, and a species’ susceptibility to one stressor does not necessarily indicate similar susceptibility to another. Although several species have been examined, it is still unclear how many other species, which may have different morphological traits, may respond to these stressors, so further examination of the different species is needed. These models can and have been applied in several different cases, often using the BioPA toolset and HBET, to better understand the potential for injury and mortality that may occur during fish passage at hydropower facilities, including specific applications, such as turbine replacement, the installation of new turbines, or changing operations of currently installed turbines. As hydropower is continually developed to meet the electricity needs of society, tools such as HBET and BioPA, used with the integrated biological response models, will aid in the development of technologies and strategies that avoid, minimize, mitigate, or manage environmental effects.

13 HYDRO ENERGY↗

Electrification Futures Study Flexible Load Profiles

This data set includes hourly profiles for flexible load developed for the Electrification Futures Study (EFS). The load profiles represent projected end-use electricity demand that is assumed to be flexible (i.e., can be shifted throughout a day) for various scenarios of flexibility (Base, Enhanced), electrification (Reference, Medium, High), and technology advancement (Slow, Moderate, Rapid), and were developed as inputs into the ReEDS model. The quantity of flexible load is estimated using assumptions on the level of flexibility and customer participation within each subsector modeled in the EFS. Detailed assumptions and modeling implementation will be documented in ongoing EFS analyses. Flexible load profiles are provided for a subset of years (2018, 2020, 2024, 2030, 2040, 2050) and are aggregated to the state and sector level. Total electricity load profiles can be found in a related EFS data set (https://dx.doi.org/10.7799/1593122). NOTE: Due to the file size, Mac users may experience issues decompressing the zip files using the Mac Archive Utility. In those cases, decompressing using the command line is recommended. - Mai, Trieu, Paige Jadun, Jeffrey Logan, Colin McMillan, Matteo Muratori, Daniel Steinberg, Laura Vimmerstedt, Ryan Jones, Benjamin Haley, and Brent Nelson. 2018. Electrification Futures Study: Scenarios of Electric Technology Adoption and Power Consumption for the United States. National Renewable Energy Laboratory. NREL/TP-6A20-71500. https://doi.org/10.2172/1459351. - Murphy, Caitlin, Trieu Mai, Yinong Sun, Paige Jadun, Matteo Muratori, Brent Nelson, Ryan Jones. Forthcoming. Electrification Futures Study: Scenarios of Power System Evolution and Infrastructure Development for the United States. National Renewable Energy Laboratory. - Sun, Yinong, Paige Jadun, Brent Nelson, Matteo Muratori, Caitlin Murphy, Jeffrey Logan, and Trieu Mai. Forthcoming. Electrification Futures Study: Methodological Approaches for Assessing Long-Term Power System Impacts of End-Use Electrification. National Renewable Energy Laboratory.

buildings↗

Airway structure and alveolar emptying in the lungs of sea lions and dogs.

Investigation of the effects of various cycles of compression and decompression on the alveolar volumes of the excised lungs of sea lions and dogs. The results obtained include the finding that, in comparison to dog lungs, sea lion lungs empty more completely on mild compression and much more completely on severe compression. These findings support Scholander's (1940) hypothesis that some marine mammals are protected from decompression sickness by cartilaginous reinforcement of the small airways which permits alveolar emptying during a dive, so isolating compressed gas from pulmonary capillary blood.

Denison, D. M.↗

Nutrition systems for pressure suits.

Nutrition systems were successfully developed in the Apollo Program for astronauts wearing pressure suits during emergency decompression situations and during lunar surface explorations. These nutrition systems consisted of unique dispensers, water, flavored beverages, nutrient-fortified beverages, and intermediate moisture food bars. The emergency decompression system dispensed the nutrition from outside the pressure suit by interfacing with a suit helmet penetration port. The lunar exploration system utilized dispensers stowed within the interior layers of the pressure suit. These systems could be adapted for provision of nutrients in other situations requiring the use of pressure suits.

Huber, C. S.↗

Barometric pressure and gas composition

Many factors affecting artificial gas atmosphere, which is used to maintain life during space flight, are considered. The wide variability of barometric pressure in spacecraft, due in large measure to spacecraft design is discussed. Explosive decompression is described; this develops from instantaneous depressurization of the cabin. Decompression sickness is reviewed, including bubble growth and evolution of gas bubbles in organisms. Dysbarism, hypoxia, and hypercapnia are also discussed.

V. B. Malkin↗

Space communication system for compressed data with a concatenated Reed-Solomon-Viterbi coding channel

A space communication system incorporating a concatenated Reed Solomon Viterbi coding channel is discussed for transmitting compressed and uncompressed data from a spacecraft to a data processing center on Earth. Imaging (and other) data are first compressed into source blocks which are then coded by a Reed Solomon coder and interleaver, followed by a convolutional encoder. The received data is first decoded by a Viterbi decoder, followed by a Reed Solomon decoder and deinterleaver. The output of the latter is then decompressed, based on the compression criteria used in compressing the data in the spacecraft. The decompressed data is processed to reconstruct an approximation of the original data-producing condition or images.

Rice, R. F.↗

Denitrogenation interruptions with air

A 3-h denitrogenation period at ground-level pressure with 95% O2-5% N2, with an air interruption of 5 min or more and matched with additional denitrogenation time equal to the interruption, will later result occasionally in altitude decompression sickness ('bends') during a 2-h decompression exposure at 3.8 psia (10,058 m equivalent) with 92% O2- 8% N2. Thus the equal time or 'mirror-image' make-up time for loss of denitrogenation did not prevent bends 7 times in 17 subjects during 71 exposures with air interruptions; on the other hand, no case of bends was reported after uninterrupted denitrogenation periods. Nitrogen-loading during the interruptive period is believed to resupply the bends sites with additional nitrogen, which re-establishes conditions favoring a return to a high incidence of bends.

Cooke, J. P.↗

Flight test evaluation of an RAF high altitude partial pressure protective assembly

A partial pressure suit was evaluated during tests in an F-104 and F-15 as a protective garment for emergency descents. The garment is an pressure jerkin and modified anti-g suit combined with an oronasal mask. The garment can be donned and doffed at the aircraft to minimize thermal buildup. The oronasal mask was favored by the pilots due to its immobility on the face during high g-loading. The garment was chosen to provide optimum dexterity for the pilot, which is not available in a full pressure suit, while protecting the pilot at altitudes up to 18,288 meters, during a cabin decompression, and subsequent aircraft descent. During cabin decompressions in the F-104 and F-15, cabin pressure altitude was measured at various aircraft angles of attack, Mach numbers, and altitudes to determine the effect of the aerodynamic slipstream on the cabin altitude.

Ashworth, G. R.↗

Friction measurements in piston-cylinder apparatus using quartz-coesite reversible transition

The value of friction determined by monitoring piston displacement as a function of nominal pressure on compression and decompression cycles at 1273 K is compared with the friction value obtained by reversing the quartz-coesite transition at 1273 and 1073 K in a talc-glass-alsimag cell (Akella and Kennedy, 1971) and a low-friction salt cell (Mirwald et al., 1975). Quenching runs at 1273 K gave double values of friction of 0.25 GPa for the talc-glass-alsimag cell and 0.03 GPa for the salt cell. The piston-displacement technique gave somewhat higher values. Use of piston-displacement hysteresis loops in evaluating the actual pressure on a sample may lead to overestimates for decompression runs and underestimates for compression runs.

Akella, J.↗