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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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cabbi-bio/ESM-R-script
This script is intended to provide a starting point for users to implement the equivalent soil mass (ESM) approach for calculating soil organic carbon (SOC) stocks and SOC mass percentages (commonly called “SOC concentration”). The user should read this readme file and understand how the script works before using it. The script contains some basic error checking algorithms, but it cannot catch all data entry mistakes. It is possible to misuse the script and produce invalid results. The script was designed to work on individual soil cores that have been divided into three or more contiguous segments, as the cubic spline function contains four coefficients. The script has not been tested on soil cores containing fewer than three contiguous segments. If only one segment is present, interpolation will necessarily be linear rather than cubic, which is expected to result in higher predictive error (Wendt & Hauser, 2013). Considering the wide range of potential applications, the script should not be expected to function correctly in all situations. The user is encouraged to modify or rewrite the script to meet their specific needs.
cabbi-bio/BECT-ABM
The emergence of the cellulosic bioeconomy requires not only adequate technological, economic, and policy advances, but also effective communication and coordination among the multiple stakeholders in the bioeconomy community. Aiming to facilitate stakeholder communication and collaboration for cellulosic bioeconomy growth, an agent-based model is developed as a community communication tool in this study. The tool simulates the behaviors and interactions of key stakeholders, as well as the responses and interactions between the stakeholders and biophysical, socioeconomic, and environmental conditions. The agent behavior rules are developed and validated based on behavior and economic theories and information attained from a stakeholder focus group study and a land use survey.
cabbi-bio/sorghum-sugarcane-RBCS-RAF1-2024
This repository includes data sets and R scripts that were used to perform analysis and produce figures for the following publication: Salesse-Smith, C. E. et al. "Adapting C4 photosynthesis to atmospheric change and increasing productivity by elevating Rubisco content in sorghum and sugarcane." Proceedings of the National Academy of Sciences 122, e2419943122 (2025) doi:10.1073/pnas.2419943122.
Importance of suberin biopolymer in plant function, contributions to soil organic carbon and in the production of bio-derived energy and materials
Abstract Suberin is a hydrophobic biopolymer of significance in the production of biomass-derived materials and in biogeochemical cycling in terrestrial ecosystems. Here, we describe suberin structure and biosynthesis, and its importance in biological (i.e., plant bark and roots), ecological (soil organic carbon) and economic (biomass conversion to bioproducts) contexts. Furthermore, we highlight the genomics and analytical approaches currently available and explore opportunities for future technologies to study suberin in quantitative and/or high-throughput platforms in bioenergy crops. A greater understanding of suberin structure and production in lignocellulosic biomass can be leveraged to improve representation in life cycle analysis and techno-economic analysis models and enable performance improvements in plant biosystems as well as informed crop system management to achieve economic and environmental co-benefits.
Structural features of xylan dictate reactivity and functionalization potential for bio-based materials
Plant-based materials have the potential to replace some petroleum-based products, offering compostability and biodegradability as critical advantages. Xylan-rich biomass sources are gaining recognition due to their abundance and underutilization in current industrial applications. Research of potential xylan applications has been complicated by the complex and heterogeneous structure that varies for different xylan feedstocks. Acylation is a broadly used reaction in functionalization of polysaccharides at an industrial scale. However, the efficiency of this reaction varies with the xylan source. To optimize xylan valorization, a systematic understanding of structure–reactivity relationships is essential. This study explores, characterizes, and compares various xylan feedstocks in the acylation process. Xylan feedstocks were analyzed for their chemical composition, degree of polymerization, branching, solubility, and presence of impurities. These features were correlated with xylan glycotypes’ reactivity toward functionalization with succinic anhydride in an optimized DMSO/KOH condition, achieving carboxyl contents of up to 1.46. We used principal component analysis and hierarchical clustering to identify key structural features of xylan that promote its reactivity. Our findings reveal that xylans with higher xylose content and lower degrees of branching exhibit enhanced reactivity, achieving higher carboxyl content and yields. Structural analyses confirmed successful modification, and light scattering analyses showed dramatic changes in the solution properties. Succinylation improves the solubility and film-forming properties of native xylans. This study shows key structure–reactivity relationships in xylan succinylation, establishing that low branching, high xylose content, and reduced lignin impurity enhance chemical functionalization. The results offer a framework for selecting optimal biomass feedstocks and support future efforts in genetic and synthetic biology to design plants with tunable xylan architectures. These findings advance the hemicellulose valorization for applications in coatings and packaging.
Small Business Voucher Program: Scaling-Up of Bio-Based C5 Building Block Production: Cooperative Research and Development Final Report, CRADA Number CRD-16-00611
Visolis, Inc. is an early stage industrial biotechnology company developing next generation of processes for producing building blocks for bulk polymers and fuels. The company is developing low-cost routes to the chemicals of the future in support of DOE, EERE and BETO goals to grow the U.S. bioeconomy. NREL has capabilities in scale-up of fermentation processes from bench top through pilot scales and also has expertise and technologies related to production of lignocellulosic sugars from cellulosic feedstocks. NREL's Integrated Biorefinery Research Facility (IBRF) houses multiple fermentation vessels/systems ranging in size from 0.5 to 9,000 L along with ancillary capabilities in compositional analysis, separations, and purification. NREL's role will be to scale-up the Visolis process to produce an intermediate product, mevalonic acid, from both dextrose and biomass derived sugars. The goals of the project are to: 1) transfer and reproduce one of Visolis's proprietary fermentation processes at bench top and pilot scale at NREL's IBRF using dextrose as the feedstock, 2) carry out bench-scale fermentations using Visolis's organism and cellulosic sugars, and 3) produce mevalonic acid from the bench top and pilot scale runs for catalyst lifetime testing and conversion to isoprene.
Turbocharging bio-based manufacturing processes
This project focused on technology of cell-free systems for rapid prototyping and biodiscovery of chemicals and fuels. We were able to build out our cell-free prototyping platform from being capable of only prototyping very basic chemicals (eg. 1,4-BDO) to being able to prototype complex chemicals derived from metagenomic sources (eg. microcin J25, new molecules). The throughput for the platform also increased multi-fold, from a capability of less than 50 reactions a day to above 1,000 reactions a day, allowing us to diversity the types of chemicals we can prototype.
Development of Bio-Compatible Fluorescent Sensor
The development for biocompatible fluorescent sensors is used to understand the movement and fracking of wild boar at SRS. Current fracking methods for wild boar include physical tagging, camera monitoring, and foot tracks in the soil. None of these methods are highly effective in determining the path and habits of the animals as it depends on live imaging, soil consistency (lack of rain), and potentially a gps system is tagged properly. This system allows fracking using an additive digested by the animal and released in the urine that will fluoresce when excited with a particular laser. This method helps determine the actual movements of the animals and even provide a potential prediction model based on their routine. We partnered with Ft. Gordon to utilize their animal testing expertise in determining the best material and pathway for these materials to be excreted.
Predictive Models and High-Performance Computing as Tools to Accelerate the Scaling-Up of New Bio-Based Fuels Workshop: Summary Report
This report summarizes the results of a virtual workshop sponsored by the Bioenergy Technologies Office held on June 9–11, 2020. The workshop discussed best practices for utilizing mathematical modeling tools across multiple scales to reduce technology uncertainty and accelerate scaling-up of biorefinery/chemical production equipment and optimize operations.
Riz Ali bio
Rizwan Ali is the Director of the National Security Research Center (NSRC), Los Alamos National Laboratory's classified library. As the Director, he sets the strategic direction for one of the largest libraries in the United States.
Comprehensive Characterization of Mixed Metal Oxide Catalysts for Enhanced Catalyst Lifetime During Bio-Based C2-C6 Oxygenates to Olefins Processes (CRADA CRD-18-00728 Final Report)
Participant has developed mixed metal oxide (MMO) catalysts to selectively convert biomass-derived C2-C6 oxygenates to olefins and then hydrocarbon fuels to meet DOE 2022 fuel targets. Selective conversion ethanol to isobutylene with MMO catalysts (ZnOZrOx) requires low ethanol feeds to maintain performance. Increasing the feed results in rapid catalyst deactivation. Participant has increased catalyst stability by adding additional metal oxides. However, variations in performance based on the level and type of additive and catalytic conditions have been observed. This project will use advanced catalyst characterization methods through the ChemCatBio Advanced Catalyst Synthesis and Characterization (ACSC) project to gain insight into key catalyst features and deactivation modes with the goal of tailoring catalyst composition to improve performance.
Atomistic Modeling and Machine Learning for Bio-advantaged Polymer Design
Abstract not provided.
The Influence of Microbial Priming Effects on the Hydro-bio-geochemistry of Large River Reservoirs
River-tributary confluences, where diverse organic matter (OM) sources mix, are considered aquatic critical zones for biogeochemical cycling. Here we evaluate dissolved OM composition and bioavailability in the mainstem of the Columbia River and three of its tributaries (Snake, Yakima, and Walla Walla rivers) along a hydrologic gradient in the Columbia River drainage basin using a variety of bulk and molecular level measurements. Field replicates and mixtures representing river-tributary confluences were incubated in the dark for 15 days to investigate the response of the microbial community to varying OM quantity/composition. The Columbia, Snake, and Yakima rivers did not differ in dissolved organic carbon (DOC), fluorescent dissolved OM (fDOM), or Chlorophyll-a (Chl-a) concentrations. However, the Walla Walla River had significantly greater DOC, fDOM, and Chl-a concentrations, indicative of greater contributions from algal DOM. FT-ICR-MS spectra for Walla Walla had significantly more peaks corresponding to amino sugars, carbohydrates and proteins while the Columbia River had more peaks for lignin, unsaturated hydrocarbons, and condensed aromatics. When incubated for 15 days in the dark, total DOC did not decrease for any of the river samples. DOC did decrease, however, in a mix representing the confluence of the Columbia and Walla Walla rivers, suggesting the microbial consortia of the Columbia River were primed by the Walla Walla River OM. OM composition was significantly different for several compound classes (e.g., lignin, protein, and tannin) following the incubations of unmixed river and tributary samples. However, the microbial community in the Walla Walla-Columbia mixture appeared to be indiscriminate of the molecular structure of the DOM as the compound class distribution did not change significantly. This provides preliminary evidence that the heterotrophs in river-tributary critical zones remineralize diverse OM structures.
Engineering Forisome Scaffolds: Elucidating Spatial Self-Assembly Patterning of Bio-inorganic Complexes
Organisms can synthesize biomaterials incorporating an array of naturally occurring elements while overcoming challenges and insults. Although, it is known that most cellular biomaterials are synthesized in specialized cellular compartments, there are knowledge gaps about how organic/inorganic biomaterial synthesis is orchestrated inside cells. In addition, there is great potential in understanding how individual monomers can self-assembly into organized patterns to form responsive biomaterials. Forisomes are a natural responsive biomaterial found in legume plants that serve as a plug sieve element in the plant phloem that undergo anisotropic conformational changes by rapid (<1 s) ATP-independent from condensed spindle to plug-like form, triggered by the influx of Ca 2+ . Addressing principles of forisome synthesis and assembly will determine how biomaterials containing inorganic elements self-assemble and conduct chemical modification to produce biomaterials or undergo biomineralization. We employ transcription and translation (TXTL) using cell-free expression systems for forisome monomer expression, self-assembly, and pattern probing. We conducted experiments to precisely control forisome proteins synthesis of various monomers SEO1, SEO2, SEO3, and SEO4 to explore self- assembly. We demonstrate forisome self-assembly of the SEO monomers is possible and indicate unique monomer fluorescent labeling patterns that require additional analysis. We investigated locations and linkers for adding tetracysteine tag fluorophore probes to determine impacts of self-assembly and anisotropic conformational changes.
Evaluation of erosion potential of bio-based multicomponent blendstocks using experimentally-validated computational fluid dynamics
The optimization of the fuel-engine interface and associated performance is a significant goal for CoOptima and the industry. The strategic driver for fuel-engine optimization is clear: diesel optimization can significantly reduce emissions including NOx, particulate matter, and CO2 emissions. Previous evaluations of ethanol and diesel blends raised significant concerns with fuel injector erosion using ethanol blends. While Sylvatex’s technology can use ethanol, it also utilizes a surfactant and water to compatibilize and modify ethanol blends, thereby controlling its impact in diesel engines. The results from the project will (1) provide important insights into complex fuels and erosion, which will be used to design additional, improved formulations; and (2) expand capabilities of Argonne’s cavitation-induced erosion risk assessment (CIERA) tool to model multi-component systems, furthering Co-Optima objectives.
Bio-based solutions to transform the climate and clean energy systems [Slides]
The study and use of non-model microbes in both natural and engineered systems, to tackle a range of national and global challenges. Unique combination of expertise from synthetic biology tool development and high throughput screening to aquatic and terrestrial environmental simulation systems.