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At least 271 records · Page 15

Untargeted, tandem mass spectrometry (LC/MS-MS) metaproteomes from soil samples in control and warming plots in Blodgett Forest, CA (2014-2021)

The pathways of carbon transport and loss through and from soils—soil organic matter (SOM) depolymerization to dissolved organic carbon and mineralization to carbon dioxide (CO2)—are fundamentally driven by microbial activity, which is strongly regulated by environmental conditions. As part of Lawrence Berkeley National Laboratory (LBNL) Terrestrial Ecosystem Science (TES) Belowground Biogeochemistry Science Focus Area (SFA), we have established a novel whole-soil long-term warming experiment at the University of California (UC) Blodgett Forest Research Station (Sierra Nevada) in 2014, where we study the role of biogeochemical, microbial and geochemical process interactions in SOM decomposition and stabilization. This package contains soil metaproteomics data in the context of site specific metagenomes from soil depth profiles in three paired control and warming plots from a temperate mixed forest in Northern California. Each paired plot had been subjected to experimental warming since June 2014 to simulate a predicted climate change scenario for northern California. These metaproteomes were collected in 2018 after 4.5 years of warming from five depth intervals (0-10 cm, 10-30 cm, 30-45 cm, 45-60 cm, 60-80 cm). For protein identification, the collected spectra were searched following a target-decoy search strategy against a database of metagenome predicted proteins (covering 96 samples from 2014 to 2021) representing the complete sequence diversity at the site. Data was searched with mass spectrometry database search tool (MS-GF+) using Pacific Northwest National Laboratory (PNNL)'s Data Management System (DMS) Processing pipeline. The metagenomes are published as part of another data package. Raw metaproteomic data and the data products from MS-GF+ are deposited in the Mass Spectrometry Interactive Virtual Environment (MassIVE) database under accession no. MSV000097826. Here we present a dataset that includes spectral counts for the detected proteins across samples (EMSL50964_BrodieAllMAGs_Globals_SC.txt), the sequences of the detected proteins, and sample metadata file that contains site information for the soil metaproteome samples.

Belowground Biogeochemistry Science Focus Area↗

A methodology to emulate and evaluate a productive virtual workstation

The Advanced Display and Computer Augmented Control (ADCACS) Program at ACT is sponsored by NASA Ames to investigate the broad field of technologies which must be combined to design a 'virtual' workstation for the Space Station Freedom. This program is progressing in several areas and resulted in the definition of requirements for a workstation. A unique combination of technologies at the ACT Laboratory have been networked to effectively create an experimental environment. This experimental environment allows the integration of nonconventional input devices with a high power graphics engine within the framework of an expert system shell which coordinates the heterogeneous inputs with the 'virtual' presentation. The flexibility of the workstation is evolved as experiments are designed and conducted to evaluate the condition descriptions and rule sets of the expert system shell and its effectiveness in driving the graphics engine. Workstation productivity has been defined by the achievable performance in the emulator of the calibrated 'sensitivity' of input devices, the graphics presentation, the possible optical enhancements to achieve a wide field of view color image and the flexibility of conditional descriptions in the expert system shell in adapting to prototype problems.

Krubsack, David↗

Preface to the Proceedings of the 23rd Topical Conference on High-Temperature Plasma Diagnostics

Measurements of phenomena advance our understanding of the physical universe. As our understanding grows, more precise measurements are required, as are measurements of new quantities. Diagnosis of a plasma requires developing new instruments, also called diagnostics, as well as new ways to analyze, interpret, synthesize, and correlate their measurements. Further, as computing power increases and multi-physics codes improve their accuracy, more precise measurements are needed to guide future code developments and to validate predictions of these simulation codes. The Topical Conference on High-Temperature Plasma Diagnostics is focused on presenting and documenting the most recent advances in these instrumentation areas for plasmas. The 23rd occurrence of this biennial conference took place on December 14–17, 2020, and was hosted by Los Alamos National Laboratory. Originally scheduled for June 2020 in Santa Fe, New Mexico, the conference was postponed and then held virtually due to the global COVID-19 pandemic. Conference times were adjusted and presentations were scheduled to meet the needs of attendees in Europe, the USA, and Asia.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Utilizing the Dynamic Networks Data Processing and Analysis Experiment (DNE18) to Establish Methodologies for the Comparison of Automatic Infrasonic Signal Detectors

The Dynamic Networks Experiment 2018 (DNE18) was a collaborative effort between Los Alamos National Laboratory (LANL), Sandia National Laboratories (SNL), Lawrence Livermore National Laboratory (LLNL) and Pacific Northwest National Laboratory (PNNL) designed to evaluate methodologies for multi-modal data ingestion and processing. One component of this virtual experiment was a quantitative assessment of current capabilities for infrasound data processing, beginning with the establishment of a baseline for infrasound signal detection. To produce such baselines, SNL and LANL exploited a common dataset of infrasound data recorded across a regional network in Utah from December 2010 through February 2011. We utilize two automated signal detectors, the Adaptive F-Detector (AFD) and the Multivariate Adaptive Learning Detector (MALD) to produce automated signal detection catalogs and an analyst-produced catalog. Comparisons indicate that automatic detectors may be able to identify small amplitude, low SNR events that cannot be identified by analyst review. We document detector performance in terms of precision and recall, demonstrating that the AFD is more precise, but the MALD has higher recall. We use a synthetic dataset of signals embedded in pink noise in order to highlight shortcomings in assessing detection algorithms for low signal to noise ratio signals which are commonly of interest to the nuclear monitoring community. For comparisons utilizing the synthetic dataset, the AFD has higher recall while precision is equal for both detectors. These results indicate that both detectors perform well across a variety of background noise environments; however, both detectors fail to identify repetitive, short duration signals arriving from similar backazimuths. These failures represent specific scenarios that could be targeted for further detector development.

97 MATHEMATICS AND COMPUTING↗

Summary Report for the Virtual Summit on Decarbonizing the Agriculture Sector

A virtual summit on decarbonizing the agriculture sector was organized on September 21-22, 2021, by Oak Ridge National Laboratory (ORNL) in anticipation of federal activities surrounding a greater role for the US Department of Energy (DOE) in support of the US Department of Agriculture (USDA) in areas related to climate and carbon impacts on the US agriculture sector. A series of thought-provoking talks were presented by leaders from industry, academia, and DOE (see attachment—final agenda, Appendix A). About 50 to 70 scientists and engineers actively participated at any one time during the summit in the talks and in the topical breakouts (Appendix B).

54 ENVIRONMENTAL SCIENCES↗

VPP Cybersecurity: Stakeholder Roles and Responsibilities

This presentation was presented at the Aggregation and Grid Security Workshop - held on June 17-18, 2025, at NREL in Golden, Colorado. The goal of the two-day workshop was to address the critical cybersecurity challenges for the future electric grid. This presentation outlines a framework for assessing the roles and responsibilities of virtual power plant stakeholders in mitigating cyber risk to virtual power plant projects and the overall power grid.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Evaluation of a virtual phase charged-coupled device as an imaging X-ray spectrometer

The X-ray response of an 800 x 800 Texas Instruments virtual phase charge-coupled device (CCD) has been measured in the range 1-8 keV. In the single-photon counting mode, excellent energy resolution (approximately 250 eV FWHM is found for single-pixel Fe-55 X-ray events at a spatial resolution of 15 microns. The detector quantum efficiency for all events is 65% at 2.3 keV (S K line) and approximately 34% at 5.9 keV (Mn K line from Fe-55). The CCD response is linear in energy to a few percent over the 1-8 keV energy range. These results demonstrate that virtual phase CCDs are superior imaging X-ray spectrometers with applications for X-ray astronomy and laboratory plasma research.

Stern, R. A.↗

Fusion interfaces for tactical environments: An application of virtual reality technology

The term Fusion Interface is defined as a class of interface which integrally incorporates both virtual and nonvirtual concepts and devices across the visual, auditory, and haptic sensory modalities. A fusion interface is a multisensory virtually-augmented synthetic environment. A new facility has been developed within the Human Engineering Division of the Armstrong Laboratory dedicated to exploratory development of fusion interface concepts. This new facility, the Fusion Interfaces for Tactical Environments (FITE) Facility is a specialized flight simulator enabling efficient concept development through rapid prototyping and direct experience of new fusion concepts. The FITE Facility also supports evaluation of fusion concepts by operation fighter pilots in an air combat environment. The facility is utilized by a multidisciplinary design team composed of human factors engineers, electronics engineers, computer scientists, experimental psychologists, and oeprational pilots. The FITE computational architecture is composed of twenty-five 80486-based microcomputers operating in real-time. The microcomputers generate out-the-window visuals, in-cockpit and head-mounted visuals, localized auditory presentations, haptic displays on the stick and rudder pedals, as well as executing weapons models, aerodynamic models, and threat models.

Haas, Michael W.↗

Utilizing the EUVE Innovative Technology Testbed to Reduce Operations Cost for Present and Future Orbiting Mission

This report summarizes work done under Cooperative Agreement (CA) on the following testbed projects: TERRIERS - The development of the ground systems to support the TERRIERS satellite mission at Boston University (BU). HSTS - The application of ARC's Heuristic Scheduling Testbed System (HSTS) to the EUVE satellite mission. SELMON - The application of NASA's Jet Propulsion Laboratory's (JPL) Selective Monitoring (SELMON) system to the EUVE satellite mission. EVE - The development of the EUVE Virtual Environment (EVE), a prototype three-dimensional (3-D) visualization environment for the EUVE satellite and its sensors, instruments, and communications antennae. FIDO - The development of the Fault-Induced Document Officer (FIDO) system, a prototype application to respond to anomalous conditions by automatically searching for, retrieving, and displaying relevant documentation for an operators use.

Source record↗

Development of isothermal rigs

The results of the Resonant Infrasonic Gauging System (RIGS) development program are reported. The RIGS is a gauging system that is capable of measuring propellant quantity under zero-G as well as under accelerated (one-G) conditions. With the exception of liquid hydrogen, it can be used to gauge virtually any propellant in liquid form including cryogenics. The gauge consists of a sensor unit which is attached to the propellant tank and electronic control unit which may be positioned separately from the sensor. The control unit receives the signals from the sensor as well as the ullage gas pressure and propellant temperature measurements, and computes the propellant quantity remaining in the tank. During the course of this program two prototype RIGS sensors were designed and constructed. The sensors were tested first in the laboratory using water as the simulated propellant and, later, using LN2 in a 100-gallon tank. The system tests proved that the gauge operates virtually as predicted by theory and yielded an accuracy better than 1%.

Kaminskas, R. A.↗

Supercomputing Pipelines Search for Therapeutics Against COVID-19

The urgent search for drugs to combat SARS-CoV-2 has included the use of supercomputers. The use of general-purpose graphical processing units (GPUs), massive parallelism, and new software for high-performance computing (HPC) has allowed researchers to search the vast chemical space of potential drugs faster than ever before. We developed a new drug discovery pipeline using the Summit supercomputer at Oak Ridge National Laboratory to help pioneer this effort, with new platforms that incorporate GPU-accelerated simulation and allow for the virtual screening of billions of potential drug compounds in days compared to weeks or months for their ability to inhibit SARS-COV-2 proteins. Here, this effort will accelerate the process of developing drugs to combat the current COVID-19 pandemic and other diseases.

60 APPLIED LIFE SCIENCES↗

ARCADE (Advanced Reactor Cyber Analysis and Development Environment)

SAND2025-11780O ARCADE (Advanced Reactor Cyber Analysis and Development Environment) software performs cybersecurity experiments on Defensive Cyber Security Architectures (DCSA) for Distributed Control Systems (DCSs). The application is integrated into a cohesive environment that performs cyber risk analyses and reduces costs. ARCADE can investigate the entire cyber-attack surface of a DCS from the physics of control, down to the firmware of individual components with automated efficiency. ARCADE has five major functional components: the Data Broker system, the virtualization environment, the cyber-attack simulator, the cyber-physical analysis system, and the physics simulator. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

Valme, Romuald↗

The security implications of global climate change. Workshop summary

The Center for Global Security Research (CGSR) at Lawrence Livermore National Laboratory (LLNL) hosted a workshop titled, “The Security Implications of Global Climate Change” on January 5-7, 2021, convened virtually due to the ongoing global COVID-19 pandemic. The workshop included participants from scientific/technical, defense, diplomacy, advocacy, and academic communities in the United States as well as from U.S. allies.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

AI-Enhanced Co-Design for Next-Generation Microelectronics: Innovating Innovation (Workshop Report)

The Artificial Intelligence Enhanced Co-Design for Next Generation Microelectronics virtual workshop was held April 4-5, 2023, and attended by subject matter experts from universities, industry, and national laboratories. This was the third in a series of workshops to motivate the research community to identify and address major challenges facing microelectronics research and production. The 2023 workshop focused on a set of topics from materials to computing algorithms, and included discussions on relevant federal legislation and such as the Creating Helpful Incentives to Produce Semiconductors and Science Act (CHIPS Act) which was signed into law in the summer of 2022. Talks at the workshop included edge computing in radiation environments, new materials for neuromorphic computing, advanced packaging for microelectronics, and new AI techniques. We also received project updates from several of the Department of Energy (DOE) microelectronics co-design projects funded in the fall of 2021, and from three of the Energy Frontier Research Centers (EFRCs) that had been funded in the fall of 2022. The workshop also conducted a set of breakout discussions around the five principal research directions (PRDs) from the 2018 Department of Energy workshop report: 1) define innovative material, device, and architecture requirements driven by applications, algorithms, and software; 2) revolutionize memory and data storage; 3) re-imagine information flow unconstrained by interconnects; 4) redefine computing by leveraging unexploited physical phenomena; 5) reinvent the electricity grid through new materials, devices, and architectures. We tasked each breakout group to consider one primary PRD (and other PRDs as relevant topics arose during discussions) and to address questions such as whether the research community has embraced co-design as a methodology and whether new developments at any level of innovation from materials to programming models requires the research community to reevaluate the PRDs developed back in 2018.

97 MATHEMATICS AND COMPUTING↗

Flexible rotor balancing by the influence coefficient method: Multiple critical speeds with rigid or flexible supports

Experimental tests were conducted to demonstrate the ability of the influence coefficient method to achieve precise balance of flexible rotors of virtually any design for operation through virtually any speed range. Various practical aspects of flexible-rotor balancing were investigated. Tests were made on a laboratory quality machine having a 122 cm (48 in.) long rotor weighing 50 kg (110 lb) and covering a speed range up to 18000 rpm. The balancing method was in every instance effective, practical, and economical and permitted safe rotor operation over the full speed range covering four rotor bending critical speeds. Improved correction weight removal methods for rotor balancing were investigated. Material removal from a rotating disk was demonstrated through application of a commercially available laser.

Tessarzik, J. M.↗

Thermal infrared spectra of the Moon

Contrary to recent assertions in the literature, lunar emission spectra obtained at an altitude of 32 km with a balloon-borne telescope are virtually undistorted by atmospheric absorption, except in the ozone region. These spectra have been found to correlate closely with laboratory emission spectra of returned lunar samples measured in a simulated lunar environment. Thus, lunar spectra obtained with the balloon-borne telescope system are the standards against which groundbased spectral measurements of the Moon should be compared. Comparison of balloon-borne measurements with recent groundbased spectral measurements suggests that the latter suffer from some source of systematic error. When high-quality lunar spectra are available, they will be best interpreted by comparison with returned lunar samples, rather than terrestrial minerals or rocks, because of subtle spectral differences between lunar and terrestrial minerals perhaps associated with incipient alteration of the latter.

Salisbury, John W.↗