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At least 271 records · Page 15
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

Moonshine, superconformal symmetry, and quantum error correction

Special conformal field theories can have symmetry groups which are interesting sporadic finite simple groups. Famous examples include the Monster symmetry group of a c = 24 twodimensional conformal field theory (CFT) constructed by Frenkel, Lepowsky and Meurman, and the Conway symmetry group of a c = 12 CFT explored in detail by Duncan and Mack-Crane. The Mathieu moonshine connection between the K3 elliptic genus and the Mathieu group M24 has led to the study of K3 sigma models with large symmetry groups. A particular K3 CFT with a maximal symmetry group preserving (4, 4) superconformal symmetry was studied in beautiful work by Gaberdiel, Taormina, Volpato, and Wendland [41]. The present paper shows that in both the GTVW and c = 12 theories the construction of superconformal generators can be understood via the theory of quantum error correcting codes. The automorphism groups of these codes lift to symmetry groups in the CFT preserving the superconformal generators. In the case of the N = 1 supercurrent of the GTVW model our result, combined with a result of T. Johnson-Freyd implies the symmetry group is the maximal subgroup of M24 known as the sextet group. (The sextet group is also known as the holomorph of the hexacode.) Building on [41] the Ramond-Ramond sector of the GTVW model is related to the Miracle Octad Generator which in turn leads to a role for the Golay code as a group of symmetries of RR states. Moreover, (4, 1) superconformal symmetry suffices to define and decompose the elliptic genus of a K3 sigma model into characters of the N = 4 superconformal algebra. The symmetry group preserving (4, 1) is larger than that preserving (4, 4).

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2018

4d SCFTs from negative-degree line bundles

We compose 4d $\mathcal{N}$ =1 quantum field theories by compactifying the (2,0) theories on a Riemann surface with genus g and n punctures, where the normal bundle decomposes into a sum of two line bundles with possibly negative degrees p and q . Not long ago, the only available field-theoretic constructions required the line bundle degrees to be nonnegative, although supergravity solutions were constructed in the literature for the zero-puncture case for all p and q . Here, we provide field-theoretic constructions and computations of the central charges of 4d $\mathcal{N}$=1 SCFTs that are the IR limit of M5-branes wrapping a surface with general p or q negative, for general genus g and number of maximal punctures n .

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2021

Subleading corrections in $ \mathcal{N} $ = 3 Gaiotto-Tomasiello theory

We study subleading corrections to the genus-zero free energy of the N = 3 Gaiotto-Tomasiello theory. In general, we obtain the endpoints and free energy as a set of parametric equations via contour integrals of the planar resolvent, up to exponentially suppressed corrections. In the particular case that the two gauge groups in the quiver are of equal rank, we find an explicit (perturbative) expansion for the free energy. If, additionally, both groups have equal levels, then we find the full expression for the genus-zero free energy, modulo exponentially suppressed corrections. We also verify our results numerically.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2022

$T\overline{T}$-deformed free energy of the Airy model

Sharpening the correspondence of Jackiw-Teitelboim (JT) gravity and its dual matrix model description at a finite radial cutoff λ through the $T\overline{T}$ deformation is of interest. To proceed, we simplify the problem by considering the Airy model and deform Airy correlators in the same way as in $T\overline{T}$ -deformed JT gravity. We use those correlators to compute the annealed and quenched free energies for both λ > 0 and λ < 0 from an integral representation of the replica trick. At the leading order in λ and low temperatures, we confirm that the genus-zero quenched free energy monotonically decreases as a function of temperature when perturbation theory is valid. We then study the all-genus quenched free energy at low temperatures, where we discover and discuss subtleties due to non-perturbative effects in the Airy model, as well as the contributions from the non-perturbative branch under the $T\overline{T}$ deformation.

2D gravity↗
DOE OSTI2017

Heterotic instanton superpotentials from complete intersection Calabi-Yau manifolds

We study Pfaffians that appear in non-perturbative superpotential terms arising from worldsheet instantons in heterotic theories. A result by Beasley and Witten shows that these instanton contributions cancel among curves within a given homology class for Calabi-Yau manifolds that can be described as hypersurfaces or complete intersections in projective or toric ambient spaces. We provide a prescription that identifies all $\mathbb{P}$ 1 curves in certain homology classes of complete intersection Calabi-Yau manifolds in products of projective spaces (CICYs) and cross-check our results by a comparison with the genus zero Gromov-Witten invariants. We then use this construction to study instanton superpotentials on those manifolds and their quotients. We identify a non-toric quotient of a non-favorable CICY with a single genus zero curve in a certain homology class, so that a cancellation à la Beasley-Witten is not possible. In another example, we study a non-toric quotient of a favorable CICY and check that the superpotential still vanishes. From this and related examples, we conjecture that the Beasley-Witten cancellation result can be extended to toric and non-toric quotients of CICYs, but can be avoided if the CICY is non-favorable.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2021

One-loop matrix elements of effective superstring interactions: α' -expanding loop integrands

In the low-energy effective action of string theories, non-abelian gauge interactions and supergravity are augmented by infinite towers of higher-mass-dimension operators. We propose a new method to construct one-loop matrix elements with insertions of operators D 2k F n and D 2k R n in the tree-level effective action of type-I and type-II superstrings. Inspired by ambitwistor string theories, our method is based on forward limits of moduli-space integrals using string tree-level amplitudes with two extra points, expanded in powers of the inverse string tension α'. Similar to one-loop ambitwistor computations, intermediate steps feature non-standard linearized Feynman propagators which eventually recombine to conventional quadratic propagators. With linearized propagators the loop integrand of the matrix elements obey one-loop versions of the monodromy and KLT relations. We express a variety of four- and five-point examples in terms of quadratic propagators and formulate a criterion on the underlying genus-one correlation functions that should make this recombination possible at all orders in α'. The ultraviolet divergences of the one-loop matrix elements are crosschecked against the non-separating degeneration of genus-one integrals in string amplitudes. Conversely, our results can be used as a constructive method to determine degenerations of elliptic multiple zeta values and modular graph forms at arbitrary weight.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2019

A Borcherds–Kac–Moody Superalgebra with Conway Symmetry

We construct here a Borcherds–Kac–Moody (BKM) superalgebra on which the Conway group \(\hbox {Co}_0\) acts faithfully. We show that the BKM algebra is generated by the physical states (BRST cohomology classes) in a chiral superstring theory. Furthermore, we use this construction to produce denominator identities for the chiral partition functions of the Conway module \(V^{s\natural }\) , a supersymmetric \(c=12\) chiral conformal field theory whose (twisted) partition functions enjoy moonshine properties and which has automorphism group isomorphic to \(\hbox {Co}_0\) . In particular, these functions satisfy a genus zero property analogous to that of monstrous moonshine. Finally, we suggest how one may promote the denominators to spacetime BPS indices in type II string theory, which might thus furnish a physical explanation of the genus zero property of Conway moonshine.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2024

Off-shell Partition Functions in 3d Gravity

We explore three-dimensional gravity with negative cosmological constant via canonical quantization. We focus on chiral gravity which is related to a single copy of PSL(2,R) Chern-Simons theory and is simpler to treat in canonical quantization. Its phase space for an initial value surface Σ is given by the appropriate moduli space of Riemann surfaces. We use geometric quantization to compute partition functions of chiral gravity on three-manifolds of the form Σ×S 1 , where Σ can have asymptotic boundaries. Most of these topologies do not admit a classical solution and are thus not amenable to a direct semiclassical path integral computation. We use an index theorem that expresses the partition function as an integral of characteristic classes over phase space. In the presence of n asymptotic boundaries, we use techniques from equivariant cohomology to localize the integral to a finite-dimensional integral over $\overline{M}$ g,n , which we evaluate in low genus cases. Higher genus partition functions quickly become complicated since they depend in an oscillatory way on Newton's constant. There is a precise sense in which one can isolate the non-oscillatory part which we call the fake partition function. We establish that there is a topological recursion that computes the fake partition functions for arbitrary Riemann surfaces Σ. As a result, there is a scaling limit in which the model reduces to JT gravity and our methods give a novel way to compute JT partition functions via equivariant localization.

Classical and Quantum Gravity↗
DOE OSTI2017

Paenibacillus aquistagni sp. nov., isolated from an artificial lake accumulating industrial wastewater

Strain 11 T was isolated from water of an artificial lake accumulating industrial wastewater on the outskirts of Celje, Slovenia. In this paper, phenotypic characterisation showed strain 11 T to be a Gram-stain positive, spore forming bacterium. The 16S rRNA gene sequence identified strain 11 T as a member of the genus Paenibacillus, closely related to Paenibacillus alvei (96.2%). Genomic similarity with P. alvei 29 T was 73.1% (gANI), 70.2% (ANIb), 86.7% (ANIm) and 21.7 ± 2.3% (GGDC). The DNA G+C content of strain 11 T was determined to be 47.5%. The predominant menaquinone of strain 11 T was identified as MK-7 and the major fatty acid as anteiso-C 15:0 . The peptidoglycan was found to contain meso-diaminopimelic acid. In contrast to its close relatives P. alvei DSM 29 T , Paenibacillus apiarius DSM 5581 T and Paenibacillus profundus NRIC 0885 T , strain 11 T was found to be able to ferment d-fructose, d-mannose and d-xylose. A draft genome of strain 11 T contains a cluster of genes associated with type IV pilin synthesis usually found in clostridia, and only sporadically in other Gram-positive bacteria. Finally, genotypic, chemotaxonomic, physiological and biochemical characteristics of strain 11 T presented in this study support the creation of a novel species within the genus Paenibacillus, for which the name Paenibacillus aquistagni sp. nov. is proposed, with strain 11 T (=ZIM B1027 T =LMG 29561 T =CCM 8679 T ) as the type strain.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2018

Geometric and algebraic structures associated with the channel quantization problem

We consider the use of surfaces as topological spaces in order to provide an answer to the quantization problem of a discrete memoryless channel (DMC). The aim is to identify the geometric and algebraic properties of the surface associated with the embedding of such a DMC. The procedure is based on the following steps: knowing the complete bipartite graph associated with a given DMC: (1) to determine the minimum and the maximum genus of the corresponding surfaces in which the given graph is embedded; (2) knowing the genus, to specify the roots as the elements of a Farey sequence of a planar algebraic curve; (3) to determine the solutions of a second-order Fuchsian differential equation as the generators of the corresponding Fuchsian group. We consider the cases of the hypergeometric and Heun equations, with three and four regular singular points, respectively. By means of this procedure, the fundamental region associated with the Fuchsian group is identified and this is the region where the planar algebraic curve is uniformized. A generalization of the quantization problem related to an m-ary input n-ary output symmetric channel viewed as a complete bipartite graph K{sub m,n}, by use of the embedding of this channel in compact surfaces is straightforward.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2023

Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case

The Integrated Microbial Genomes and Microbiomes (IMG/M) system is a web-based platform that provides access to the wealth of public sequence data arising from diverse environments and enables the user to answer biological questions. In this review, we explore IMG’s tools and features using genome data for genus Deinococcus isolates as well as metagenome-assembled genomes (MAGs). Here, we use various comparative genomic and visualization tools to investigate this genus and address specific research questions.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2017

Anyonic entanglement and topological entanglement entropy

We study the properties of entanglement in two-dimensional topologically ordered phases of matter. Such phases support anyons, quasiparticles with exotic exchange statistics. The emergent nonlocal state spaces of anyonic systems admit a particular form of entanglement that does not exist in conventional quantum mechanical systems. We study this entanglement by adapting standard notions of entropy to anyonic systems. We use the algebraic theory of anyon models (modular tensor categories) to illustrate the nonlocal entanglement structure of anyonic systems. Using this formalism, we present a general method of deriving the universal topological contributions to the entanglement entropy for general system configurations of a topological phase, including surfaces of arbitrary genus, punctures, and quasiparticle content. We analyze a number of examples in detail. Our results recover and extend prior results for anyonic entanglement and the topological entanglement entropy. - Highlights: • Entanglement of anyonic systems is studied using standard notions of entropy. • The algebraic theory of anyon models for higher genus surfaces is developed. • A general method for calculating topological entanglement entropy is presented. • Topological entanglement entropy originates from conservation of topological charge.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2018

Microcapsule of sweet orange essential oil changes gut microbiota in diet-induced obese rats

Highlights: • Sweet orange essential oil (SOEO) microcapsules had weight loss effect on obese SD rats induced by high-fat diet. • SOEO microcapsules increased the relative abundance of Bifidobacterium (genus-level) in gut microbiota. • SOEO microcapsules protected gut barrier and decreased gut endotoxin levels by increasing the content of Bifidobacterium. Obesity is associated with the changes in gut microbiota. The aim of present study was to investigate the effects of sweet orange essential oil (SOEO) microcapsules on body weight and gut microbiota in obese rats induced by high-fat diet. By analyzing the body weight, fat rate and the sequence of cloned microbial small-subunit ribosomal RNA genes (16S rDNA) in rats fecal samples, we found that SOEO microcapsules decreased the body weight and increased the relative abundance of Bifidobacterium (genus-level) in gut microbiota. The analysis of endotoxin content proved that SOEO microcapsules protected gut barrier and decreased gut endotoxin levels by increasing the content of Bifidobacterium, then ameliorated low-grade inflammation, achieving the goal of losing weight. This might be the mechanism of SOEO microcapsules to lose body weight and provided a novel anti-obesity dietary supplement.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2017

Characterization of a novel, ubiquitous fungal endophyte from the rhizosphere and root endosphere of Populus trees

Here, we examined variation in growth rate, patterns of nitrogen utilization, and competitive interactions of Atractiellarhizophila isolates from the roots of Populus hosts. Atractiella grew significantly faster on media substituted with inorganic nitrogen sources and slower in the presence of another fungal genus. In order to determine plausible causal mechanisms we used metabolomics to explore competitive interactions between Atractiella strains and Fusarium oxysporum or Leptosphaerulina chartarum. Metabolomic screening of potential microbial inhibitors showed increased levels of glycosides produced in vitro by Atractiella when grown with a different fungal genus, relative to when grown alone. Overall, our results suggest Atractiella is a poor competitor with other fungi via direct routes e.g. faster growth rates, but may utilize chemical interactions and possibly nitrogen sources to defend itself, and niche partition its way to abundance in the plant host root and rhizosphere.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Complete genome of Polaromonas vacuolata KCTC 22033 T isolated from beneath Antarctic Sea ice

Polaromonas vacuolata KCTC 22033 T is an obligate aerobic, Gram-negative, psychrophilic and rod-shaped bacterium isolated from beneath the sea ice off the coast of the Palmer Peninsula, Anvers Islands, Antarctica. P. vacuolata is the type species of Polaromonas genus and the first example of gas vacuolate Betaproteobacteria isolated from marine habitats. In this study, we report a complete genome of P. vacuolata KCTC 22033 T , which consists of 3,837,686 bp (G + C content of 52.07%) with a single chromosome, 3461 protein-coding genes, 56 tRNAs and 6 rRNA operons. Genomic analysis revealed the presence of genes involved in bacterial adaptation under saline conditions, cold adaptation via the production of gas vesicles and cell adhesion proteins, and a photoheterotrophic lifestyle when challenged by starvation. Intriguingly, several of these genes were likely acquired from species outside the Polaromonas genus. The genomic information therefore describes the unique evolution and adaptation of P. vacuolata to its extraordinary habitat, i.e., beneath the Antarctic sea ice.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2016

‘ Candidatus Dichloromethanomonas elyunquensis’ gen. nov., sp. nov., a dichloromethane-degrading anaerobe of the Peptococcaceae family

Taxonomic assignments of anaerobic dichloromethane (DCM)-degrading bacteria remain poorly constrained but are important for understanding the microbial diversity of organisms contributing to DCM turnover in environmental systems. Here, we describe the taxonomic classification of a novel DCM degrader in consortium RM obtained from pristine Rio Mameyes sediment. Phylogenetic analysis of full-length 16S rRNA gene sequences demonstrated that the DCM degrader was most closely related to members of the genera Dehalobacter and Syntrophobotulus, but sequence similarities did not exceed 94% and 93%, respectively. Genome-aggregate average amino acid identities against Peptococcaceae members did not exceed 66%, suggesting that the DCM degrader does not affiliate with any described genus. Phylogenetic analysis of conserved single-copy functional genes supported that the DCM degrader represents a novel clade. Growth strictly depended on the presence of DCM, which was consumed at a rate of 160 ± 3 μmol L -1 d -1 . The DCM degrader attained 5.25 × 10 7 ± 1.0 × 10 7 cells per μmol DCM consumed. Fluorescence in situ hybridization revealed rod-shaped cells 4 ± 0.8 μm long and 0.4 ± 0.1 μm wide. Furthermore, based on the unique phylogenetic, genomic, and physiological characteristics, we propose that the DCM degrader represents a new genus and species, ‘Candidatus Dichloromethanomonas elyunquensis’.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2013

Identification and characterization of a novel adenovirus in the cloacal bursa of gulls

Several viruses of the family of Adenoviridae are associated with disease in birds. Here we report the detection of a novel adenovirus in the cloacal bursa of herring gulls (Larus argentatus) and lesser black-backed gulls (Larus fuscus) that were found dead in the Netherlands in 2001. Histopathological analysis of the cloacal bursa revealed cytomegaly and karyomegaly with basophilic intranuclear inclusions typical for adenovirus infection. The presence of an adenovirus was confirmed by electron microscopy. By random PCR in combination with deep sequencing, sequences were detected that had the best hit with known adenoviruses. Phylogenetic analysis of complete coding sequences of the hexon, penton and polymerase genes indicates that this novel virus, tentatively named Gull adenovirus, belongs to the genus Aviadenovirus. The present study demonstrates that birds of the Laridae family are infected by family-specific adenoviruses that differ from known adenoviruses in other bird species. - Highlights: ► Lesions typical for adenovirus infection detected in cloacal bursa of dead gulls. ► Confirmation of adenovirus infection by electron microscopy and deep sequencing. ► Sequence analysis indicates that it is a novel adenovirus in the genus Aviadenovirus. ► The novel (Gull) adenovirus was detected in multiple organs of two species of gulls.

60 APPLIED LIFE SCIENCES↗