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Results for “explicit and implicit methods”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 271 records · Page 15
All sourcesNASA NTRSDOE OSTI
DOE OSTI2014

Development of EEM based silicon–water and silica–water wall potentials for non-reactive molecular dynamics simulations

Molecular dynamics simulations of heat transfer in gases are computationally expensive when the wall molecules are explicitly modeled. To save computational time, an implicit boundary function is often used. Steele's potential has been used in studies of fluid–solid interface for a long time. In this work, the conceptual idea of Steele's potential was extended in order to simulate water–silicon and water–silica interfaces. A new wall potential model is developed by using the electronegativity-equalization method (EEM), a ReaxFF empirical force field and a non-reactive molecular dynamics package PumMa. Contact angle simulations were performed in order to validate the wall potential model. Contact angle simulations with the resulting tabulated wall potentials gave a silicon–water contact angle of 129°, a quartz–water contact angle of 0°, and a cristobalite–water contact angle of 40°, which are in reasonable agreement with experimental values.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2020

Clustering-Based Predictive Analytics to Improve Scientific Data Discovery

Given the sheer volume of scientific data archived within the data-intensive projects at the US Department of Energy's Oak Ridge National Laboratory, finding precisely what data we are looking for may not be a trivial task; conversely, we may also miss a more prominent data product. To address such issues, we propose improving the data discovery system and using data analytics methods to comprehend what specific users might be interested in based on their physiological state, search patterns, and past data usage history. This work's primary goal is to prune the complexity, increase the visibility of popular data products, and direct users toward the data that best meet their needs. The proposed algorithm constructs a user profile based on the user's explicit or implicit interactions with the system, such as items they are currently looking at on-site and the key metadata mappings related to the data set. The pattern is then used to build a training data set, which will help find relevant data to recommend to the user.

Devarakonda, Ranjeet↗
DOE OSTI2017

Multireference Density Functional Theory with Generalized Auxiliary Systems for Ground and Excited States

To describe static correlation, we create a new approach to density functional theory (DFT), which uses a generalized auxiliary system that is of a different symmetry, such as particle number or spin, from that of the physical system. The total energy of the physical system consists of two parts: the energy of the auxiliary system, which is determined with a chosen density functional approximation (DFA), and the excitation energy from an approximate linear response theory that restores the symmetry to that of the physical system, thus rigorously leading to a multideterminant description of the physical system. The electron density of the physical system is different from that of the auxiliary system and is uniquely determined from the functional derivative of the total energy with respect to the external potential. Our energy functional is thus an implicit functional of the physical system density, but an explicit functional of the auxiliary system density. We demonstrate that the total energy minimum and stationary states, describing the ground and excited states of the physical system, can be obtained by a self-consistent optimization with respect to the explicit variable, the generalized Kohn–Sham noninteracting density matrix. We have developed the generalized optimized effective potential method for the self-consistent optimization. Among options of the auxiliary system and the associated linear response theory, reformulated versions of the particle–particle random phase approximation (pp-RPA) and the spin-flip time-dependent density functional theory (SF-TDDFT) are selected for illustration of principle. Numerical findings show that our multireference DFT successfully describes static correlation in bond dissociation and double bond rotation.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2014

Coarse-grain model for natural cellulose fibrils in explicit water

Understanding biomass structure and dynamics on multiple time and length scales is important for the development of cellulosic biofuels. To this aim, we have developed a coarse-grain (CG) model for molecular dynamics (MD) simulations of cellulose fibrils in explicit water based on target observables from fully atomistic simulations. This model examines the significance of the presence of explicit solvent and compares results with the previous, implicit solvent CG cellulose models. The present, constraint-free CG model is used to generate a series of noncrystalline fibril structures using a coupling parameter, λ, between fully crystalline and fully amorphous potentials. By exploring various structural parameters, including the root-mean-square deviation, root-mean-square fluctuations, radius of gyration, and persistence length, we find the crystalline-to-amorphous state transition takes place at λ ≈ 0.386. The persistence length of cellulose fibril in the transition region corresponds to that of native cellulose fibrils. The transition between crystalline and amorphous fibrils occurs at larger values of λ in explicit water than in the implicit case. Detailed analysis of individual energetic contribution to the transition reveals that the nonbonded interactions, in particular, that of cellulose water interaction, plays a significant role in the observed crystalline to amorphous transition of cellulose fibril. The present study thus highlights the importance of solvent presence that cannot be adequately described with the previous implicit solvent model. In conclusion, the present method provides an accurate and constraint-free approach for deriving a variety of structures of cellulose in water, with a wide range of crystallinity, suitable for incorporation into large-scale models of lignocellulosic biomass.

09 BIOMASS FUELS↗
DOE OSTI2023

An Extension of the Athena++ Code Framework for Radiation-magnetohydrodynamics in General Relativity Using a Finite-solid-angle Discretization

We extend the general-relativistic magnetohydrodynamics (GRMHD) capabilities of Athena++ to incorporate radiation. The intensity field in each finite-volume cell is discretized in angle, with explicit transport in both space and angle properly accounting for the effects of gravity on null geodesics, and with matter and radiation coupled in a locally implicit fashion. Here we describe the numerical procedure in detail, verifying its correctness with a suite of tests. Motivated in particular by black hole accretion in the high-accretion-rate, thin-disk regime, we demonstrate the application of the method to this problem. With excellent scaling on flagship computing clusters, the port of the algorithm to the GPU-enabled AthenaK code now allows the simulation of many previously intractable radiation-GRMHD systems.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2019

Efficient Operator-Coarsening Multigrid Schemes for Local Discontinuous Galerkin Methods

An efficient hp-multigrid scheme is presented for local discontinuous Galerkin (LDG) discretizations of elliptic problems, formulated around the idea of separately coarsening the underlying discrete gradient and divergence operators. We show that traditional multigrid coarsening of the primal formulation leads to poor and suboptimal multigrid performance, whereas coarsening of the flux formulation leads to essentially optimal convergence and is equivalent to a purely geometric multigrid method. The resulting operator-coarsening schemes do not require the entire mesh hierarchy to be explicitly built, thereby obviating the need to compute quadrature rules, lifting operators, and other mesh-related quantities on coarse meshes. We show that good multigrid convergence rates are achieved in a variety of numerical tests on two-dimensional and three-dimensional uniform and adaptive Cartesian grids, as well as for curved domains using implicitly defined meshes and for multiphase elliptic interface problems with complex geometry. Extensions, e.g., to non-LDG discretizations and fully unstructured meshes, are briefly discussed.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2013

Fully implicit particle-in-cell algorithms for kinetic simulation of plasmas [Slides]

We have demonstrated, for the first time, a fully implicit, fully nonlinear electrostatic PIC formulation that features: (1) Exact charge conservation (via a novel particle mover strategy). (2) Exact energy conservation (no particle self-heating or self-cooling). (3) Adaptive particle orbit integrator to control errors in momentum conservation. The approach has been shown to be free of CFL and finite-grid numerical instabilities. As a result, the method is able to take time steps many times larger than explicit, and resolutions many times coarser. Central to our implementation is the concept of particle enslavement. We have generalized formulation to use spatial adaptivity via mapped coordinates. he method has much potential for efficiency gains vs. explicit in long-time-scale applications, with the CPU speedup scaling as $(kΛ_D)-^{(d+1)}/N_{FE}$. Minimize the number of nonlinear function evaluations $N_{FE}$ for given $Δt$, $Δx \Rightarrow$ preconditioning! We have formulated and implemented a very efficient moment-based preconditioner. We have ported the algorithm to GPU architectures. We have generalized the algorithm to non-radiative electromagnetic regimes (Darwin model), where, in addition to charge and energy, we also conserve canonical momenta.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2019

Numerical Simulation of Critical Factors Controlling Heat Extraction from Geothermal Systems Using a Closed-Loop Heat Exchange Method

Closed-loop heat exchange for geothermal energy production involves injecting working fluid down a well that extends through the geothermal resource over a significant length to absorb heat by conduction through the well pipe. The well then needs to return to the surface for energy recovery and fluid re-injection to complete the cycle. We have carried out mixed convective-conductive fluid-flow modeling using a wellbore flow model for TOUGH2 called T2Well to investigate the critical factors that control closed-loop geothermal energy recovery. T2Well solves a mixed explicit-implicit set of momentum equations for flow in the pipe with full coupling to the implicit three-dimensional integral finite difference equations for Darcy flow in the porous medium. T2Well has the option of modeling conductive heat flow from the porous medium to the pipe by means of a semi-analytical solution which makes the computation very efficient because the porous medium does not have to be discretized. When the fully three-dimensional option is chosen, the porous medium is discretized and heat flow to the pipe is by conduction and convection, depending on reservoir permeability and other factors. Simulations of the closed-loop system for a variety of parameter values have been carried out to elucidate the heat recovery process. To the extent that convection may occur to aid in heat delivery to the pipe, the permeability of the geothermal reservoir, whether natural or stimulated, is an important property in heat extraction. The injection temperature and flow rate of the working fluid strongly control the ultimate energy recovery. Pipe diameter also plays a strong role in heat extraction, but is correlated with flow rate. Similarly, the choice of working fluid plays an important role, with water showing better heat extraction than CO2 for certain flow rates, while the CO2 has higher pressure at the production wellhead which can aid in surface energy recovery. In general, we find complex interactions between the critical factors that will require advanced computational approaches to fully optimize.

Oldenburg, Curtis↗
DOE OSTI2022

Time-explicit Darwin PIC algorithm

A new approach to Darwin particle-in-cell plasma simulation is described. Using a finite-element approach, the vector potential is assured to be exactly solenoidal. This allows writing the system of multi-species particles as an action-at-a-distance Hamiltonian system. Applying recently-developed explicit symplectic methods to this gives a time-explicit algorithm with all desired properties. Elliptic systems for the electrostatic and magneto-static portions of the problem are inverted efficiently by an algebraic multi-grid algorithm. The algorithm is implemented in a two-dimensional Cartesian-geometry code and tested by application to Weibel instability and to Alfvén wave dynamics. Results show the effectiveness of this approach. Extensions to arbitrary meshes and to a partially time-implicit scheme are briefly discussed.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2019

thornado-transport: IMEX schemes for two-moment neutrino transport respecting Fermi-Dirac statistics

We develop implicit-explicit (IMEX) schemes for neutrino transport in a background material in the context of a two-moment model that evolves the angular moments of a neutrino phase-space distribution function. Considering the upper and lower bounds that are introduced by Pauli's exclusion principle on the moments, an algebraic moment closure based on Fermi-Dirac statistics and a convex-invariant time integrator both are demanded. A finite-volume/first-order discontinuous Galerkin(DG) method is used to illustrate how an algebraic moment closure based on Fermi-Dirac statistics is needed to satisfy the bounds. Several algebraic closures are compared with these bounds in mind, and the Cernohorsky and Bludman closure, which satisfies the bounds, is chosen for our IMEX schemes. For the convex-invariant time integrator, two IMEX schemes named PD-ARS have been proposed. PD-ARS denotes a convex-invariant IMEX Runge-Kutta scheme that is high-order accurate in the streaming limit, and works well in the diffusion limit. Our two PD-ARS schemes use second-and third-order, explicit, strong-stability-preserving Runge-Kutta methods as their explicit part, respectively, and therefore are second-and third-order accurate in the streaming limit, respectively. The accuracy and convex-invariance of our PD-ARS schemes are demonstrated in the numerical tests with a third-order DG method for spatial discretization and a simple Lax-Friedrichs flux. The method has been implemented in our high-order neutrino-radiation hydrodynamics (thornado) toolkit. We show preliminary results employing tabulated neutrino opacities.

Chu, Ran↗
DOE OSTI2021

Decoupled Fréchet kernels based on a fractional viscoacoustic wave equation

We formulate the Fréchet kernel computation using the adjoint-state method based on a fractional viscoacoustic wave equation. We first numerically prove that both the 1/2- and the 3/2-order fractional Laplacian operators are self-adjoint. Using this property, we show that the adjoint wave propagator preserves the dispersion and compensates the amplitude, while the time-reversed adjoint wave propagator behaves identically as the forward propagator with the same dispersion and dissipation characters. Without introducing rheological mechanisms, this formulation adopts an explicit Q parameterization, which avoids the implicit Q in the conventional viscoacoustic/viscoelastic full waveform inversion (Q-FWI). In addition, because of the decoupling of operators in the wave equation, the viscoacoustic Fréchet kernel is separated into three distinct contributions with clear physical meanings: lossless propagation, dispersion, and dissipation. Here, we find that the lossless propagation kernel dominates the velocity kernel, while the dissipation kernel dominates the attenuation kernel over the dispersion kernel.

58 GEOSCIENCES↗
DOE OSTI2024

Sparse-grid discontinuous Galerkin methods for the Vlasov–Poisson–Lenard–Bernstein model

Sparse-grid methods have recently gained interest in reducing the computational cost of solving high-dimensional kinetic equations. In this paper, we construct adaptive and hybrid sparse-grid methods for the Vlasov–Poisson–Lenard–Bernstein (VPLB) model. This model has applications to plasma physics and is simulated in two reduced geometries: a 0x3v space homogeneous geometry and a 1x3v slab geometry. Here we use the discontinuous Galerkin (DG) method as a base discretization due to its high-order accuracy and ability to preserve important structural properties of partial differential equations. We utilize a multiwavelet basis expansion to determine the sparse-grid basis and the adaptive mesh criteria. We analyze the proposed sparse-grid methods on a suite of three test problems by computing the savings afforded by sparse-grids in comparison to standard solutions of the DG method. The results are obtained using the adaptive sparse-grid discretization library ASGarD.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2020

Sequentially coupled flow and geomechanical simulation with a discrete fracture model for analyzing fracturing fluid recovery and distribution in fractured ultra-low permeability gas reservoirs

More accurate characterization and prediction of the in-situ distribution of fracturing fluid in fractured reservoirs are needed for enhancing well productivity. In this study, an implicit-sequentially coupled flow/geomechanics simulator incorporating an efficient discrete fracture model is developed to model fluid distribution and recovery performance of ultra-low permeability gas reservoirs. The finite-volume and finite-element methods are used for space discretization of the flow and geomechanics equations, respectively, while the backward Euler method is employed for time discretization. The flow and geomechanics equations are solved sequentially based on fixed-stress splitting. An efficient discrete-fracture model is used to explicitly model the fractured system. Flexible unstructured gridding is employed to model arbitrarily-oriented fractures. The interrelations among pore volume, permeability and geomechanical conditions are considered dynamically using two-way coupled flow and geomechanics computations. The geometry of fracture (networks) due to hydraulic fracturing has significant impacts on the fracturing fluid recovery efficiency and ensuing fluid distribution. Under the same injection volume, the fracturing fluid recovery is higher when the fracture geometry is planar. Fluid recovery is relatively lower whenever natural fractures are activated during fracturing treatments; flowback time is also shortened when complex fracture network with enlarged fracture interface is present. Fracturing fluid in hydraulic fractures may leak off into the natural fractures and subsequently imbibes into the surrounding matrix due to capillarity effects. The fracturing fluid recovery and in-situ fluid distribution are sensitive to the shut-in duration and fracture closure behavior. This study analyzes the coupled flow-geomechanical responses of fractured gas reservoirs during the post-fracturing periods. Understanding the fate of the fracturing fluid can provide insights on, to some extent, the stimulated fracture volume, size of the water invasion zone, and efficiency of the fracturing design. The simulation predictions can also provide more accurate initial reservoir conditions (e.g. distributions of different phases and pressure) for long-term well performance estimation.

42 ENGINEERING↗
DOE OSTI2013

A NUMERICAL TREATMENT OF ANISOTROPIC RADIATION FIELDS COUPLED WITH RELATIVISTIC RESISTIVE MAGNETOFLUIDS

We develop a numerical scheme for solving fully special relativistic, resistive radiation magnetohydrodynamics. Our code guarantees conservation of total mass, momentum, and energy. The radiation energy density and the radiation flux are consistently updated using the M-1 closure method, which can resolve an anisotropic radiation field, in contrast to the Eddington approximation, as well as the flux-limited diffusion approximation. For the resistive part, we adopt a simple form of Ohm's law. The advection terms are explicitly solved with an approximate Riemann solver, mainly the Harten-Lax-van Leer scheme; the HLLC and HLLD schemes are also solved for some tests. The source terms, which describe the gas-radiation interaction and the magnetic energy dissipation, are implicitly integrated, relaxing the Courant-Friedrichs-Lewy condition even in an optically thick regime or a large magnetic Reynolds number regime. Although we need to invert 4 Multiplication-Sign 4 matrices (for the gas-radiation interaction) and 3 Multiplication-Sign 3 matrices (for the magnetic energy dissipation) at each grid point for implicit integration, they are obtained analytically without preventing massive parallel computing. We show that our code gives reasonable outcomes in numerical tests for ideal magnetohydrodynamics, propagating radiation, and radiation hydrodynamics. We also applied our resistive code to the relativistic Petschek-type magnetic reconnection, revealing the reduction of the reconnection rate via radiation drag.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2020

Generative adversarial networks (GAN) based efficient sampling of chemical composition space for inverse design of inorganic materials

A major challenge in materials design is how to efficiently search the vast chemical design space to find the materials with desired properties. One effective strategy is to develop sampling algorithms that can exploit both explicit chemical knowledge and implicit composition rules embodied in the large materials database. Here, we propose a generative machine learning model (MatGAN) based on a generative adversarial network (GAN) for efficient generation of new hypothetical inorganic materials. Trained with materials from the ICSD database, our GAN model can generate hypothetical materials not existing in the training dataset, reaching a novelty of 92.53% when generating 2 million samples. The percentage of chemically valid (charge-neutral and electronegativity-balanced) samples out of all generated ones reaches 84.5% when generated by our GAN trained with such samples screened from ICSD, even though no such chemical rules are explicitly enforced in our GAN model, indicating its capability to learn implicit chemical composition rules to form compounds. Our algorithm is expected to be used to greatly expand the range of the design space for inverse design and large-scale computational screening of inorganic materials.

36 MATERIALS SCIENCE↗
DOE OSTI2025

Electromagnetic Transient Simulation of Photovoltaic Inverter Using Implicit-Explicit Solver

This paper introduces the implementation of electromagnetic transient (EMT) simulations of a photovoltaic (PV) inverter module using the Implicit-Explicit (ImEx) solver in the Suite of Nonlinear and Differential/Algebraic Equation Solvers (SUNDIALS). This study demonstrates the effectiveness of the ImEx solver in overcoming the challenges inherent in simulating the complex dynamics of PV inverter modules. Furthermore, using SUNDIALS’ ImEx solver module ARKODE for EMT simulation automates key aspects of the process, such as numerical integration, providing substantial benefits including enhanced consistency, faster implementation, reduced human error, and the capability to handle the complexities of advanced numerical integration. By conducting comparative simulations with an implicit method used in commercial software, the research showcases the ImEx solver’s capability in achieving high accuracy and reliability. Results indicate that leveraging the ImEx approach significantly enhances modeling fidelity and reduces simulation setup times, offering a promising tool for the EMT analysis of PV inverter systems in power electronics-dominated power grids.

Choi, Jongchan [ORNL] (ORCID:000000025952455X)↗
DOE OSTI2026

Augmenting Molecular Graphs with Geometries via Machine Learning Interatomic Potentials

Accurate molecular property predictions require 3D geometries, which are typically obtained using expensive methods such as density functional theory (DFT). Here, we attempt to obtain molecular geometries by relying solely on machine learning interatomic potential (MLIP) models. To this end, we first curate a large-scale molecular relaxation dataset comprising 3.5 million molecules and 300 million snapshots. Then MLIP pre-trained models are trained with supervised learning to predict energy and forces given 3D molecular structures. Once trained, we show that the pre-trained models can be used in different ways to obtain geometries either explicitly or implicitly. First, it can be used to obtain approximate low-energy 3D geometries via geometry optimization. While these geometries do not consistently reach DFT-level chemical accuracy or convergence, they can still improve downstream performance compared to non-relaxed structures. To mitigate potential biases and enhance downstream predictions, we introduce geometry fine-tuning based on the relaxed 3D geometries. Second, the pre-trained models can be directly fine-tuned for property prediction when ground truth 3D geometries are available. Our results demonstrate that MLIP pre-trained models trained on relaxation data can learn transferable molecular representations to improve downstream molecular property prediction and can provide practically valuable but approximate molecular geometries that benefit property predictions. Our code is publicly available at: https://github.com/divelab/AIRS/.

Fu, Cong [Texas A & M Univ., College Station, TX (↗