Improved Draft Genome Sequence of Clostridium pasteurianum Strain ATCC 6013 (DSM 525) Using a Hybrid Next-Generation Sequencing Approach
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Pyne, Michael↗
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Draft Genome Sequence of Anoxybacillus suryakundensis Strain JS1 T (DSM 27374 T ) Isolated from a Hot Spring in Jharkhand, India
Anoxybacillus suryakundensis strain JS1 T , a facultative anaerobic, moderately thermophilic, alkalitolerant bacterium, was isolated from a hot spring. The estimated genome is 2.6 Mb and encodes 2,668 proteins.
59 BASIC BIOLOGICAL SCIENCES↗
Draft Genome Sequence of Idiomarina woesei Strain W11 T (DSM 27808 T ) Isolated from the Andaman Sea
Idiomarina woesei strain W11 T was isolated from the Andaman Sea. Heterotrophic growth was observed at 30 to 37°C and pH 7 to 9. It grows in the presence of 0.5 to 12% (wt/vol) NaCl, and optimum growth occurred at 5 to 6% NaCl. The estimated genome is 2.4 Mb and encodes 2,305 proteins.
54 ENVIRONMENTAL SCIENCES↗
Draft Genome Sequence of Tepidiphilus thermophilus Strain JHK30 T (JCM 19170 T ) Isolated from a Terrestrial Hot Spring in India
Tepidiphilus thermophilus strain JHK30 T was isolated from a hot spring at Surajkund, Jharkhand, India. It is a Gram-negative rod, nonsporulating, aerobic, and motile. The estimated genome is 2.3 Mb, with 2,186 protein-coding sequences.
59 BASIC BIOLOGICAL SCIENCES↗
Draft Genome Assembly of Bordetella bronchiseptica ATCC 10580, a Historical Canine Clinical Isolate
We present the scaffolded genome of Bordetella bronchiseptica ATCC 10580, assembled into 98 contigs. This 5.1-Mb assembly (68.2% GC content) contains 4,870 coding regions. The strain was originally isolated from canine lung tissue and is used in quality control testing
59 BASIC BIOLOGICAL SCIENCES↗
Draft Genome Assembly of Delftia acidovorans Type Strain 2167
The Delftia acidovorans 2167 (ATCC 15668, Delftia type strain) genome was sequenced into a 6-contig scaffolded assembly of 6.78-Mb. This environmental microbe, previously named to both the Comamonas and Pseudomonas genera, is an opportunistic pathogen and often the subject of phylogenetic placement debates.
59 BASIC BIOLOGICAL SCIENCES↗
Draft Genome Assembly of Klebsiella pneumoniae Type Strain ATCC 13883
Klebsiella pneumoniae is a common cause of antibiotic-resistant bacterial infections in immunocompromised individuals. Here, we present the 5.54-Mb scaffolded assembly of the type strain K. pneumoniae type strain ATCC 13883, as deposited in GenBank under accession no. JOOW00000000.
59 BASIC BIOLOGICAL SCIENCES↗
Draft Genome Assembly of Neisseria lactamica Type Strain A7515
We present the scaffolded genome assembly of Neisseria lactamica type strain A7515 (ATCC 23970) as submitted to NCBI under accession no. JOVI00000000. This type strain of the lactose-fermenting Neisseria species is often used in quality control testing and intra-genus phylogenetic analyses. The assembly includes four contigs placed into a single scaffold.
59 BASIC BIOLOGICAL SCIENCES↗
Draft Genome Assembly of Pseudomonas aeruginosa Quality Control Reference Strain Boston 41501
We present the scaffolded genome assembly of Pseudomonas aeruginosa Boston 41501, now publicly available in GenBank (JOVK00000000) in 10 contigs placed into a single scaffold. The 6.82-Mbp genome contains 66.1% GC content and 6,295 coding sequences, including type 4 pilus and type 3 secretion system production genes.
59 BASIC BIOLOGICAL SCIENCES↗
Draft Genome Assembly of Ralstonia pickettii Type Strain K-288 (ATCC 27853)
We present the genome assembly of Ralstonia pickettii K-288 (ATCC 27511), consisting of 27 contigs placed into a single scaffold. This 4.76-Mbp genome has 64.0% GC content and 4,425 coding sequences. Because this is the type strain, inclusion of its data set among other Ralstonia genomes should provide a historical genomic perspective.
59 BASIC BIOLOGICAL SCIENCES↗
Draft Genome Sequence of the White-Rot Fungus Obba rivulosa 3A-2
ABSTRACT We report here the first genome sequence of the white-rot fungus Obba rivulosa (Polyporales, Basidiomycota), a polypore known for its lignin-decomposing ability. The genome is based on the homokaryon 3A-2 originating in Finland. The genome is typical in size and carbohydrate active enzyme (CAZy) content for wood-decomposing basidiomycetes.
Miettinen, Otto↗
Draft Genome Sequence of Heavy Metal-Resistant Cupriavidus alkaliphilus ASC-732 T , Isolated from Agave Rhizosphere in the Northeast of Mexico
Cupriavidus alkaliphilus ASC-732 T was isolated from the rhizosphere of agave plant growing in alkaline soils in San Carlos, Tamaulipas, Mexico. The species is able to grow in the presence of arsenic, zinc, and copper. The genome sequence of strain ASC-732 T is 6,125,055 bp with 5,586 genes and an average G+C content of 67.81%.
59 BASIC BIOLOGICAL SCIENCES↗
Draft Genome Sequence of Serratia sp. Strain ATCC 39006, a Model Bacterium for Analysis of the Biosynthesis and Regulation of Prodigiosin, a Carbapenem, and Gas Vesicles
Serratia sp. strain ATCC 39006 is a Gram-negative bacterium and a member of the Enterobacteriaceae that produces various bioactive secondary metabolites, including the tripyrrole red pigment prodigiosin and the β-lactam antibiotic 1-carbapenen-2-em- 3-carboxylic acid (a carbapenem). This strain is the only member of the Enterobacteriaceae known to naturally produce gas vesicles, as flotation organelles. Here we present the genome sequence of this strain, which has served as a model for analysis of the biosynthesis and regulation of antibiotic production.
59 BASIC BIOLOGICAL SCIENCES↗
Draft Genome Assemblies of Proteus mirabilis ATCC 7002 and Proteus vulgaris ATCC 49132
The pleomorphic swarming bacilli of the genus Proteus are common human gut commensal organisms but also the causative agents of recurrent urinary tract infections and bacteremia. We sequenced and assembled the 3.99-Mbp genome of Proteus mirabilis ATCC 7002 (accession no. JOVJ00000000) and the 3.97-Mbp genome of Proteus vulgaris ATCC 49132 (accession no. JPIX00000000), both of which are commonly used reference strains.
59 BASIC BIOLOGICAL SCIENCES↗
Draft Genome Assemblies of Enterobacter aerogenes CDC 6003-71, Enterobacter cloacae CDC 442-68, and Pantoea agglomerans UA 0804-01
The Enterobacteriaceae are environmental and enteric microbes. We sequenced the genomes of two Enterobacter reference strains, E. aerogenes CDC 6003-71 and E. cloacae CDC 442-68, as well as one near neighbor used as an exclusionary reference for diagnostics, Pantoea agglomerans CDC UA0804-01. The genome sizes range from 4.72 to 5.55 Mbp and have GC contents from 54.6 to 55.1%.
59 BASIC BIOLOGICAL SCIENCES↗
Draft Genome Sequence of the Basidiomycete White-Rot Fungus Phlebia centrifuga
Here, we report the genome sequence of wood-decaying white-rot fungus Phlebia centrifuga strain FBCC195, isolated from Norway spruce ( Picea abies ) in Finnish Lapland. The 34.66-Mb genome containing 13,785 gene models is similar to the genome length reported for other saprobic white-rot species.
59 BASIC BIOLOGICAL SCIENCES↗
Draft Genome Sequences of Three Strains of a Novel Rhizobiales Species Isolated from Forest Soil
Three strains of a novel Rhizobiales species were isolated from temperate deciduous forest soil in central Massachusetts. Their genomes consist of 9.09 to 10.29 Mb over 3 to 4 scaffolds each and indicate that diverse nitrogenous compounds are used by these organisms.
59 BASIC BIOLOGICAL SCIENCES↗
Draft Genome Sequences of Five New Strains of Methylophilaceae Isolated from Lake Washington Sediment
We sequenced the genomes of five new Methylophilaceae strains isolated from Lake Washington sediment. We used the new sequences to sort these new strains into specific Methylophilaceae ecotypes, including one novel ecotype. The new genomes expand the known diversity of Methylophilaceae and provide new models for studying the ecology of methylotrophy.
59 BASIC BIOLOGICAL SCIENCES↗