Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “data”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 271 records · Page 15
All sourcesNASA NTRSDOE OSTI
DOE OSTI2018

Polar Liquid Cloud Base Detection Algorithms for High Spectral Resolution or Micropulse Lidar Data

Liquid layers in clouds affect their microphysical processes, as well as the atmospheric energy budget. However, explicit liquid cloud base height (LCBH) detection algorithms using ground-based instruments (e.g., lidars) are currently absent in the literature. Most studies use either fixed lidar parameter thresholds or cloud base height data products that do not distinguish between ice and liquid, all of which might introduce inconsistencies and errors in the resolved LCBHs. In this paper, two LCBH detection algorithms are presented; the first algorithm uses the high spectral resolution lidar (HSRL) data, and yields satisfactory results. The second algorithm incorporates micropulse lidar (MPL) data for the LCBH detection. A 1-year long comparison of data gathered at Barrow, Alaska, and McMurdo Station, Antarctica, which includes other cloud base detection methodologies (ceilometer, MPL value-added product cloud base height, LCBHs detected using a fixed MPL depolarization threshold) emphasize the merits of the MPL algorithm.

Silber, Israel↗
DOE OSTI2022

Enabling FAIR data in Earth and environmental science with community-centric (meta)data reporting formats

Abstract Research can be more transparent and collaborative by using Findable, Accessible, Interoperable, and Reusable (FAIR) principles to publish Earth and environmental science data. Reporting formats—instructions, templates, and tools for consistently formatting data within a discipline—can help make data more accessible and reusable. However, the immense diversity of data types across Earth science disciplines makes development and adoption challenging. Here, we describe 11 community reporting formats for a diverse set of Earth science (meta)data including cross-domain metadata (dataset metadata, location metadata, sample metadata), file-formatting guidelines (file-level metadata, CSV files, terrestrial model data archiving), and domain-specific reporting formats for some biological, geochemical, and hydrological data (amplicon abundance tables, leaf-level gas exchange, soil respiration, water and sediment chemistry, sensor-based hydrologic measurements). More broadly, we provide guidelines that communities can use to create new (meta)data formats that integrate with their scientific workflows. Such reporting formats have the potential to accelerate scientific discovery and predictions by making it easier for data contributors to provide (meta)data that are more interoperable and reusable.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2015

Cosmic ray propagation and dark matter in light of the latest AMS-02 data

The AMS-02 experiment is measuring the high energy cosmic rays with unprecedented accuracy. We explore the possibility of determining the cosmic-ray propagation models using the AMS-02 data alone. A global Bayesian analysis of the constraints on the cosmic-ray propagation models from the preliminary AMS-02 data on the Boron to Carbon nuclei flux ratio and proton flux is performed, with the assumption that the primary nucleon source is a broken power law in rigidity. The ratio of the diffusion coefficient D{sub 0} to the diffusive halo height Z{sub h} is determined with high accuracy D{sub 0}/Z{sub h}≃2.00±0.07 cm{sup 2}s{sup −1}kpc{sup −1}, and the value of the halo width is found to be Z{sub h}≃3.3 kpc with uncertainty less than 50%. As a consequence, the typical uncertainties in the positron fraction predicted from dark matter (DM) annihilation is reduced to a factor of two, and that in the antiproton flux is about an order of magnitude. Both of them are significantly smaller than that from the analyses prior to AMS-02. Taking into account the uncertainties and correlations in the propagation parameters, we derive conservative upper limits on the cross sections for DM annihilating into various standard model final states from the current PAMELA antiproton data. We also investigate the reconstruction capability of the future high precision AMS-02 antiproton data on the DM properties. The results show that for DM particles lighter than ∼100 GeV and with typical thermal annihilation cross section, the cross section can be well reconstructed with uncertainties about a factor of two for the AMS-02 three-year data taking.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2020

GNET2: an R package for constructing gene regulatory networks from transcriptomic data

Abstract Motivation The Gene Network Estimation Tool (GNET) is designed to build gene regulatory networks (GRNs) from transcriptomic gene expression data with a probabilistic graphical model. The data preprocessing, model construction and visualization modules of the original GNET software were developed on different programming platforms, which were inconvenient for users to deploy and use. Results Here, we present GNET2, an improved implementation of GNET as an integrated R package. GNET2 provides more flexibility for parameter initialization and regulatory module construction based on the core iterative modeling process of the original algorithm. The data exchange interface of GNET2 is handled within an R session automatically. Given the growing demand for regulatory network reconstruction from transcriptomic data, GNET2 offers a convenient option for GRN inference on large datasets. Availability and implementation The source code of GNET2 is available at https://github.com/jianlin-cheng/GNET2. Supplementary information Supplementary data are available at Bioinformatics online.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

MISIP: a data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence and experiment

DNA/RNA-stable isotope probing (SIP) is a powerful tool to link in situ microbial activity to sequencing data. Every SIP dataset captures distinct information about microbial community metabolism, process rates, and population dynamics, offering valuable insights for a wide range of research questions. Data reuse maximizes the information derived from the labor and resource-intensive SIP approaches. Yet, a review of publicly available SIP sequencing metadata showed that critical information necessary for reproducibility and reuse was often missing. Here, we outline the Minimum Information for any Stable Isotope Probing Sequence (MISIP) according to the Minimum Information for any (x) Sequence (MIxS) framework and include examples of MISIP reporting for common SIP experiments. Our objectives are to expand the capacity of MIxS to accommodate SIP-specific metadata and guide SIP users in metadata collection when planning and reporting an experiment. The MISIP standard requires 5 metadata fields—isotope, isotopolog, isotopolog label, labeling approach, and gradient position—and recommends several fields that represent best practices in acquiring and reporting SIP sequencing data (e.g., gradient density and nucleic acid amount). The standard is intended to be used in concert with other MIxS checklists to comprehensively describe the origin of sequence data, such as for marker genes (MISIP-MIMARKS) or metagenomes (MISIP-MIMS), in combination with metadata required by an environmental extension (e.g., soil). The adoption of the proposed data standard will improve the reuse of any sequence derived from a SIP experiment and, by extension, deepen understanding of in situ biogeochemical processes and microbial ecology.

Simpson, Abigayle↗
DOE OSTI2021

Where’s Swimmy?: Mining unique color features buried in galaxies by deep anomaly detection using Subaru Hyper Suprime-Cam data

Abstract We present the Swimmy (Subaru WIde-field Machine-learning anoMalY) survey program, a deep-learning-based search for unique sources using multicolored (grizy) imaging data from the Hyper Suprime-Cam Subaru Strategic Program (HSC-SSP). This program aims to detect unexpected, novel, and rare populations and phenomena, by utilizing the deep imaging data acquired from the wide-field coverage of the HSC-SSP. This article, as the first paper in the Swimmy series, describes an anomaly detection technique to select unique populations as “outliers” from the data-set. The model was tested with known extreme emission-line galaxies (XELGs) and quasars, which consequently confirmed that the proposed method successfully selected $\sim\!\! 60\%$–$70\%$ of the quasars and $60\%$ of the XELGs without labeled training data. In reference to the spectral information of local galaxies at z = 0.05–0.2 obtained from the Sloan Digital Sky Survey, we investigated the physical properties of the selected anomalies and compared them based on the significance of their outlier values. The results revealed that XELGs constitute notable fractions of the most anomalous galaxies, and certain galaxies manifest unique morphological features. In summary, deep anomaly detection is an effective tool that can search rare objects, and, ultimately, unknown unknowns with large data-sets. Further development of the proposed model and selection process can promote the practical applications required to achieve specific scientific goals.

Astronomy & Astrophysics↗
DOE OSTI2025

When more data hurts: Optimizing data coverage while mitigating diversity-induced underfitting in an ultrafast machine-learned potential

Machine-learned interatomic potentials (MLIPs) are becoming an essential tool in materials modeling. However, optimizing the generation of training data used to parametrize the MLIPs remains a significant challenge. This is because MLIPs can fail when encountering local environments too different from those present in the training data. The difficulty of determining a priori the environments that will be encountered during molecular dynamics simulation necessitates diverse, high-quality training data. Here, this study investigates how training data diversity affects the performance of MLIPs using the Ultra-Fast force field (UF 3 ) to model amorphous silicon nitride. We employ expert and autonomously generated data to create the training data and fit four force field variants to subsets of the data. Our findings reveal a critical balance in training data diversity: insufficient diversity hinders generalization, while excessive diversity can exceed the MLIP's learning capacity, reducing simulation accuracy. Specifically, we found that the UF 3 variant trained on a subset of the training data, in which nitrogen-rich structures were removed, offered vastly better prediction and simulation accuracy than any other variant. By comparing these UF 3 variants, we highlight the nuanced requirements for creating accurate MLIPs, emphasizing the importance of application-specific training data to achieve optimal performance in modeling complex material behaviors.

ab initio molecular dynamics↗
DOE OSTI2018

Xi-cam : a versatile interface for data visualization and analysis

Xi-cam is an extensible platform for data management, analysis and visualization. Xi-cam aims to provide a flexible and extensible approach to synchrotron data treatment as a solution to rising demands for high-volume/high-throughput processing pipelines. The core of Xi-cam is an extensible plugin-based graphical user interface platform which provides users with an interactive interface to processing algorithms. Plugins are available for SAXS/WAXS/GISAXS/GIWAXS, tomography and NEXAFS data. With Xi-cam 's `advanced' mode, data processing steps are designed as a graph-based workflow, which can be executed live, locally or remotely. Remote execution utilizes high-performance computing or de-localized resources, allowing for the effective reduction of high-throughput data. Xi-cam 's plugin-based architecture targets cross-facility and cross-technique collaborative development, in support of multi-modal analysis. Xi-cam is open-source and cross-platform, and available for download on GitHub.

Pandolfi, Ronald J. (ORCID:0000000308248548)↗
DOE OSTI2018

Data-Driven Robust M-LS-SVR-Based NARX Modeling for Estimation and Control of Molten Iron Quality Indices in Blast Furnace Ironmaking

Optimal operation of an industrial blast furnace (BF) ironmaking process largely depends on a reliable measurement of molten iron quality (MIQ), which is not feasible using the conventional sensors. This paper proposes a novel data-driven robust modeling method for online estimation and control of MIQ indices. First, to completely capture the nonlinear dynamics of the BF process, the nonlinear autoregressive exogenous (NARX) model is constructed for the MIQ indices. Then, considering that the standard least-squares support vector regression (LS-SVR) cannot directly cope with the multi-output problem, the multi- task transfer learning is proposed to design a novel multi-output LS-SVR (M-LS-SVR) for learning of the NARX model. Furthermore, a novel M-estimator is proposed to reduce the interference of outliers and improve the robustness of the M-LS- SVR model. Since the weights of different outlier data are properly given by the weight function, their corresponding contributions on modeling can be properly distinguished, thus a robust modeling result can be achieved. Finally, a novel multi- objective evaluation index on modeling performance is developed by comprehensively considering the root mean square error of modeling and the correlation coefficient on trend fitting, based on which the NSGA-II algorithm is used to globally optimize the model parameters. Both experiments using industrial data and industrial applications illustrate that the proposed method can eliminate the adverse effect caused by the fluctuation of data in BF process efficiently, which indicates its stronger robustness and higher accuracy. Moreover, control testing shows that the developed model can be well applied to realize data-driven control of the BF process.

blast cavities, Control↗
DOE OSTI2019

UPS: Unified PMU-Data Storage System to Enhance T+D PMU Data Usability

The emerging distribution-level phasor measurement unit (D-PMU) is expected to play an important role in enhancing distribution system observability and situational-awareness. It is a demanding yet challenging task to develop advanced D-PMU data management and analytics tools to improve D-PMU data usability and further promote D-PMU projects deployment. This paper focuses on D-PMU data processing and storage. It presents a brief review of existing D-PMU data storage systems and points out their limitations on high-performance, flexibility, and scalability. To overcome the limitations, a unified PMU-data storage system (UPS) is proposed. Specifically, a unified I/O interface between storage servers and computing jobs is developed to effectively reduce the overhead of managing various computing jobs and data analytics over multiple storage infrastructures; and PMUCache with PMUCache partitioning and PMUCache replacement algorithms are designed to support in-situ data processing and shared distributed data storage and further serve the computing jobs/queries with different Quality of Service (QoS) requirements. Through a series of experiments, it is demonstrated that UPS achieves high performance on fast and big data processing and storage, and efficiently increases the flexibility and scalability of PMU data management systems.

42 ENGINEERING↗
DOE OSTI2026

Data for "Genetics of flooding tolerance in an F2 Miscanthus sacchariflorus ssp. lutarioriparius × M. sinensis population"

This dataset contains all data and supplementary materials from "Genetics of flooding tolerance in an F2 Miscanthus sacchariflorus ssp. lutarioriparius × M. sinensis population". 1. The dataset S1 table contains the raw phenotypic data collected during the experiment. 2. The dataset S2 table contains the LSmean values for the 24 traits studied. 3. The dataset S3 table contains the TASSEL GBSv2 map, marker information, and genotype data used for mapping. 4. The dataset S4 table contains information on candidate genes found in each of the QTL intervals. 5. The dataset S5 table contains the GO annotations and KEGG enrichment analyses for those candidate genes. 6. The dataset S6 table contains information on the sequences used to classify AP2 ERF transcription factors. 7. The dataset S7 table contains information on AP2 ERF orthologs between Miscanthus and rice based on synteny. 8. Supplementary file 1 contains the ANOVA results using the raw phenotypic data collected from protocol "A". 9. Supplementary file 2 contains the ANOVA results using the raw phenotypic data collected from protocol "B". 10. Supplementary file 3 contains notes on the comparison of SNP calling methods. 11. Supplementary file 4 is a script for analyzing candidate genes found in QTL intervals.

Miscanthus, flood, partial submergence, complete s↗
DOE OSTI2022

Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale

The nascent field of microbiome science is transitioning from a descriptive approach of cataloging taxa and functions present in an environment to applying multi-omics methods to investigate microbiome dynamics and function. A large number of new tools and algorithms have been designed and used for very specific purposes on samples collected by individual investigators or groups. While these developments have been quite instructive, the ability to compare microbiome data generated by many groups of researchers is impeded by the lack of standardized application of bioinformatics methods. Additionally, there are few examples of broad bioinformatics workflows that can process metagenome, metatranscriptome, metaproteome and metabolomic data at scale, and no central hub that allows processing, or provides varied omics data that are findable, accessible, interoperable and reusable (FAIR). Here, we review some of the challenges that exist in analyzing omics data within the microbiome research sphere, and provide context on how the National Microbiome Data Collaborative has adopted a standardized and open access approach to address such challenges.

NMDC, Microbiome↗
DOE OSTI2019

The Morphology and Structure of Stellar Populations in the Fornax Dwarf Spheroidal Galaxy from Dark Energy Survey Data

Using deep wide-field photometry 3 yr data (Y3) from the Dark Energy Survey (DES), we introduce a panoramic study of the Fornax dwarf spheroidal galaxy. The data discussed here—a small subset of the full survey—uniformly cover a region of 25 deg 2 centered on the galaxy to a depth of g ~ 23.5. We use these data to study the structural properties of Fornax, overall stellar population, and its member stars in different evolutionary phases. We also search for possible signs of tidal disturbance. Fornax is found to be significantly more spatially extended than what early studies suggested. No statistically significant distortions or signs of tidal disturbances were found down to a surface brightness limit of ~32.1 mag arcsec -2 . Yet, there are hints of shell-like features located ~20'–40' from the center of Fornax that may be stellar debris from past merger events. We also find that intermediate-age and young main-sequence populations show different orientation at the galaxy center and have many substructures. The deep DES Y3 data allow us to characterize the age of those young stellar substructures with great accuracy, both those previously known and those newly identified as possible overdensities in this work, on the basis of their color–magnitude diagram morphology. We find that the youngest overdensities are all found on the eastern side of Fornax, where the Fornax field population itself is slightly younger than in the west. In summary, the high-quality DES Y3 data reveal that Fornax has many rich structures and provide insights into its complex formation history.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

EDX Spatial: Leveraging cloud and hybrid data management resources for spatial data

In the last few years, the National Energy Technology Laboratory has started leveraging cloud-hosted services for hosting spatial data collections published on the Energy Data eXchange (EDX). Using cloud-hosted storage and compute options offers multiple benefits for visualization and tool development through utilization of spatial data resources. The transition from on-premises services to cloud-hosted services has enabled a few key features: increased accessibility of large derivative datasets, dynamic integration of external authoritative data resources directly from outside entities through representational state transfer application programming interfaces (REST API), and the ability to produce complex mapping applications, dashboards, and online maps. As a result of the shift, NETL has launched EDX Spatial, a platform that leverages on-premises resources combined with cloud compute capabilities to enable enhanced online mapping interfaces and optimize data access. In addition, a unified workflow for handling the public release of spatial data products through EDX has been developed, including standardization of data hosting practices, metadata, symbology, and application elements. This poster reviews the opportunity of leveraging cloud-hosted and hybrid data management solutions for spatial data, and discusses the benefits and lessons learned while leveraging these services through the data repository EDX.

Morkner, Paige↗
DOE OSTI2018

ColorMap ND : A Data-Driven Approach and Tool for Mapping Multivariate Data to Color

A wide variety of color schemes have been devised for mapping scalar data to color. We address the challenge of color-mapping multivariate data. While a number of methods can map low-dimensional data to color, for example, using bilinear or barycentric interpolation for two or three variables, these methods do not scale to higher data dimensions. Likewise, schemes that take a more artistic approach through color mixing and the like also face limits when it comes to the number of variables they can encode. Our approach does not have these limitations. It is data driven in that it determines a proper and consistent color map from first embedding the data samples into a circular interactive multivariate color mapping display (ICD) and then fusing this display with a convex (CIE HCL) color space. The variables (data attributes) are arranged in terms of their similarity and mapped to the ICD’s boundary to control the embedding. Using this layout, the color of a multivariate data sample is then obtained via modified generalized barycentric coordinate interpolation of the map. In conclusion, the system we devised has facilities for contrast and feature enhancement, supports both regular and irregular grids, can deal with multi-field as well as multispectral data, and can produce heat maps, choropleth maps, and diagrams such as scatterplots.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2021

Data from: "A guide to using GitHub for developing and versioning data standards and reporting formats"

These data are the results of a systematic review that investigated how data standards and reporting formats are documented on the version control platform GitHub. Our systematic review identified 32 data standards in earth science, environmental science, and ecology that use GitHub for version control of data standard documents. In our analysis, we characterized the documents and content within each of the 32 GitHub repositories to identify common practices for groups that version control their documents on GitHub.In this data package, there are 8 CSV files that contain data that we characterized from each repository, according to the location within the repository. For example, in 'readme_pages.csv' we characterize the content that appears across the 32 GitHub repositories included in our systematic review. Each of the 8 CSV files has an associated data dictionary file (names appended with '_dd.csv' and here we describe each content category within CSV files.There is one file-level metadata file (flmd.csv) that provides a description of each file within the data package.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2026

FAIRLinked: Data FAIRification Tools for Materials Data Science

FAIRLinked is a software package created to support the FAIRification of materials science data, ensuring proper alignment with FAIR principles: Findable, Accessible, Interoperable, and Reusable. It is built to be compatible with MDS-Onto, an ontology designed to capture the semantics of various types of materials data, enabling integration and sharing across different research workflows. The package is subdivided into three subpackages: InterfaceMDS, RDFTableConversion, and QBWorkflow. The first subpackage, InterfaceMDS allows users to search for terms using either string search or various filters, explore different domains and subdomains, and add terms to MDS-Onto. RDFTableConversion is used for serialization and deserialization of data from CSV into JSONLDs and vice versa in a way that captures the semantics of the data using MDS-Onto. Lastly, QBWorkflow is a serialization and deserialization workflow that incorporates RDF Data Cube vocabulary, useful for working with multidimensional datasets. By offering these packages, FAIRLinked lowers the barrier of creating FAIR, machine-actionable data for researchers in the materials science community.

FAIR↗
DOE OSTI2018

A Cost-Benefit Analysis of Automated Physiological Data Acquisition Systems Using Data-Driven Modeling

Precision medicine and the continuous analysis of “Big data” promises to improve patient outcomes dramatically in the near future. Very recently, healthcare facilities have started to explore automatic collection of patient-specific physiological data with the aim of reducing nursing workload and decreasing manual data entry errors. In addition to those purposes, continuous physiological data can be used for the early detection and prevention of common, and possibly fatal, diseases. For instance, poor patient outcomes from sepsis, a leading cause of mortality in healthcare facilities and a major driver of hospital costs in the USA, can be mitigated when detected early using screening tools that monitor the changing dynamics of physiological data. However, the potential cost of collecting continuous physiological data remains a barrier to the widespread adoption of automated high-frequency data collection systems. In this paper, we perform cost-benefit analysis (CBA) of machine learning applied to various types of acquisition systems (with different collection intervals) to determine if the benefits of such systems will outweigh their implementation costs. Although such systems can be used in the detection of various complications, in order to showcase the immediate benefits, we focus on the early detection of sepsis, one of the major challenges of hospital systems. We present a general approach to conduct such analysis for a wide range of hospitals and highlight its applicability using a case study for a small hospital with 150 beds and 3000 annual patients where the acquisition system would collect data at 1-min intervals. Finally, we discuss how the analysis may help guide incentives/policies with regard to adopting automated data acquisition systems.

99 GENERAL AND MISCELLANEOUS↗