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At least 271 records · Page 15

A Spatiotemporal Indexing Approach for Efficient Processing of Big Array-Based Climate Data with MapReduce

Climate observations and model simulations are producing vast amounts of array-based spatiotemporal data. Efficient processing of these data is essential for assessing global challenges such as climate change, natural disasters, and diseases. This is challenging not only because of the large data volume, but also because of the intrinsic high-dimensional nature of geoscience data. To tackle this challenge, we propose a spatiotemporal indexing approach to efficiently manage and process big climate data with MapReduce in a highly scalable environment. Using this approach, big climate data are directly stored in a Hadoop Distributed File System in its original, native file format. A spatiotemporal index is built to bridge the logical array-based data model and the physical data layout, which enables fast data retrieval when performing spatiotemporal queries. Based on the index, a data-partitioning algorithm is applied to enable MapReduce to achieve high data locality, as well as balancing the workload. The proposed indexing approach is evaluated using the National Aeronautics and Space Administration (NASA) Modern-Era Retrospective Analysis for Research and Applications (MERRA) climate reanalysis dataset. The experimental results show that the index can significantly accelerate querying and processing (10 speedup compared to the baseline test using the same computing cluster), while keeping the index-to-data ratio small (0.0328). The applicability of the indexing approach is demonstrated by a climate anomaly detection deployed on a NASA Hadoop cluster. This approach is also able to support efficient processing of general array-based spatiotemporal data in various geoscience domains without special configuration on a Hadoop cluster.

big data↗

A solar-wind 'trigger' for the outer heliosphere radio emissions and the distance to the terminal shock

The solar wind data from the plasma science experiment on the Voyager spacecraft are examined to search for the source of the 2 to 3 kHz radio noise detected in the outer heliosphere. It is found that two anomalous high speed streams passed Voyager 2 before the noise was initially observed. It is suggested that the interaction of these streams with the terminal shock is responsible for the more intense emission. Using a time-of-flight argument, the distance to the shock is estimated at about 70 AU-140 AU. The larger value is consistent with an estimate using Voyager data and a standard pressure-balance argument.

Mcnutt, Ralph L., Jr.↗

Interactions between muscle and the immune system during modified musculoskeletal loading

Interactions between the immune system and skeletal muscle may play a significant role in modulating the course of muscle injury and repair after modified musculoskeletal loading. Current evidence indicates that activation of the complement system is an early event during modified loading, which then leads to inflammatory cell invasion. However, the functions of those inflammatory cells are complex and they seem to be capable of promoting additional injury and repair. Recent findings implicate an early invading neutrophil population in increasing muscle damage that is detected by the presence of muscle membrane lesions. Macrophages that invade subsequently serve to remove cellular debris, and seem to promote repair. However, macrophages also have the ability to increase damage in muscle in which there is an impaired capacity to generate nitric oxide. In vivo and in vitro evidence indicates that muscle-derived nitric oxide can serve an important role in protecting muscle from membrane damage by invading inflammatory cells. Collectively, these findings indicate that the dynamic balance between inflammatory cells, the complement system, and muscle-derived free radicals can play important roles in the secondary damage of muscle during modified musculoskeletal loading.

Review↗

Kinetic Roughening and Energetics of Tetragonal Lysozyme Crystal Growth: A Preliminary Atomic Force Microscopy Investigation

We examined particulars of crystal growth from measurements obtained at both microscopic and molecular levels. The crystal growth measurements performed at the microscopic level are well characterized by a model that balances the flux of macromolecules towards the crystal surface with the flux of the crystal surface. Numerical evaluation of model with measurements of crystal growth, in time, provided accurate estimates for the average growth velocities. Growth velocities thus obtained were also interpreted using well-established phenomenological theories. Moreover, we find that microscopic measurements of growth velocity measurements obtained as a function of temperature best characterizes changes in crystal growth modes, when present. We also examined the possibility of detecting a change in crystal growth modes at the molecular level using atomic force microscopy, AFM. From preliminary AFM measurements performed at various supersaturations, we find that magnitude of surface height fluctuations, h(x), increases with supersaturation. Further examination of surface height fluctuations using methods established for fluctuation spectroscopy also enabled the discovery of the existence of a characteristic length, c, which may possibly determine the mode of crystal growth. Although the results are preliminary, we establish the non- critical divergence of 5 and the root-mean-square (rms) magnitude of height-height fluctuations as the kinetic roughening transition temperatures are approached. Moreover, we also examine approximate models for interpreting the non-critical behavior of both 6 and rms magnitude of height-height fluctuations, as the solution supersaturation is increased towards the kinetic roughening supersaturation.

Gorti, Sridhar↗

Comparison of Force and Moment Coefficients for the Same Test Article in Multiple Wind Tunnels

This paper compares the results of force and moment measurements made on the same test article and with the same balance in three transonic wind tunnels. Comparisons are made for the same combination of Reynolds number, Mach number, sideslip angle, control surface configuration, and angle of attack range. Between-tunnel force and moment differences are quantified. An analysis of variance was performed at four unique sites in the design space to assess the statistical significance of between-tunnel variation and any interaction with angle of attack. Tunnel to tunnel differences too large to attribute to random error were detected were observed for all forces and moments. In some cases these differences were independent of angle of attack and in other cases they changed with angle of attack.

Deloach, Richard↗

A simple implementation of the Viterbi algorithm on the Motorola DSP56001

As systems designers design communication systems with digital rather than analog components to reduce noise and increase channel capacity, they must have the ability to perform traditional communication algorithms digitally. The use of trellis coded modulation as well as the extensive use of convolutional encoding for error detection and correction requires an efficient digital implementation of the Viterbi Algorithm for real time demodulation and decoding. Digital signal processors are now fast enough to implement Viterbi decoding in conjunction with the normal receiver/transmitter functions for lower speed channels on a single chip as well as performing fast decoding for higher speed channels, if the algorithm is implemented efficiently. The purpose of this paper is to identify a good way to implement the Viterbi Algorithm (VA) on the Motorola DSP56001, balancing performance considerations with speed and memory efficiency.

Messer, Dion D.↗

Flutter analysis of swept-wing subsonic aircraft with parameter studies of composite wings

A computer program is presented for the flutter analysis, including the effects of rigid-body roll, pitch, and plunge of swept-wing subsonic aircraft with a flexible fuselage and engines mounted on flexible pylons. The program utilizes a direct flutter solution in which the flutter determinant is derived by using finite differences, and the root locus branches of the determinant are searched for the lowest flutter speed. In addition, a preprocessing subroutine is included which evaluates the variable bending and twisting stiffness properties of the wing by using a laminated, balanced ply, filamentary composite plate theory. The program has been substantiated by comparisons with existing flutter solutions. The program has been applied to parameter studies which examine the effect of filament orientation upon the flutter behavior of wings belonging to the following three classes: wings having different angles of sweep, wings having different mass ratios, and wings having variable skin thicknesses. These studies demonstrated that the program can perform a complete parameter study in one computer run. The program is designed to detect abrupt changes in the lowest flutter speed and mode shape as the parameters are varied.

Housner, J. M.↗

Dynamic remapping decisions in multi-phase parallel computations

The effectiveness of any given mapping of workload to processors in a parallel system is dependent on the stochastic behavior of the workload. Program behavior is often characterized by a sequence of phases, with phase changes occurring unpredictably. During a phase, the behavior is fairly stable, but may become quite different during the next phase. Thus a workload assignment generated for one phase may hinder performance during the next phase. We consider the problem of deciding whether to remap a paralled computation in the face of uncertainty in remapping's utility. Fundamentally, it is necessary to balance the expected remapping performance gain against the delay cost of remapping. This paper treats this problem formally by constructing a probabilistic model of a computation with at most two phases. We use stochastic dynamic programming to show that the remapping decision policy which minimizes the expected running time of the computation has an extremely simple structure: the optimal decision at any step is followed by comparing the probability of remapping gain against a threshold. This theoretical result stresses the importance of detecting a phase change, and assessing the possibility of gain from remapping. We also empirically study the sensitivity of optimal performance to imprecise decision threshold. Under a wide range of model parameter values, we find nearly optimal performance if remapping is chosen simply when the gain probability is high. These results strongly suggest that except in extreme cases, the remapping decision problem is essentially that of dynamically determining whether gain can be achieved by remapping after a phase change; precise quantification of the decision model parameters is not necessary.

Nicol, D. M.↗

Climate studies from satellite observations - Special problems in the verification of earth radiation balance, cloud climatology, and related climate experiments

A body of techniques that have been developed and planned for use during the Earth Radiation Budget Experiment (ERBE), the International Satellite Cloud Climatology Project (ISCCP), and related climate experiments of the 1980's are reviewed. Validation and verification methods must apply for systems of satellites. They include: (1) use of a normalization or intercalibration satellite, (2) special intensive observation areas located over ground-truth sites, and (3) monitoring of sun and earth by several satellites and/or several instruments at the same time. Since each climate application area has a hierarchy of user communities, validation techniques vary from very detailed methods to those that simply assure high relative accuracy in detecting space and time variations for climate studies. It is shown that climate experiments generally require more emphasis on long-term stability and internal consistency of satellite data sets than high absolute accuracy.

Vonder Haar, T. H.↗

Long-term climate change and the geochemical cycle of carbon

The response of the coupled climate-geochemical system to changes in paleography is examined in terms of the biogeochemical carbon cycle. The simple, zonally averaged energy balance climate model combined with a geochemical carbon cycle model, which was developed to study climate changes, is described. The effects of latitudinal distributions of the continents on the carbon cycle are investigated, and the global silicate weathering rate as a function of latitude is measured. It is observed that a concentration of land area at high altitudes results in a high CO2 partial pressure and a high global average temperature, and for land at low latitudes a cold globe and ice are detected. It is noted that the CO2 greenhouse feedback effect is potentially strong and has a stabilizing effect on the climate system.

Marshall, Hal G.↗

Mission Status, On-Orbit Performance, and Lessons Learned of the Global Ecosystem Dynamics Investigation (GEDI) Lidar Laser Transmitters

The Global Ecosystems Dynamics Investigation (GEDI) Lidar, is a global 3-dimensional biomass lidar instrument aboard the International Space Station (ISS) and the Japanese Experiment Module (JEM). Its core mission is to measure the global carbon balance of Earth’s forests with 3 laser transmitters using multi-beam waveform-capture methods. GEDI’s laser transmitter concept was originally funded by NASA Goddard’s Earth Science Technology Office (ESTO) for future Earth Altimetry and Lidar missions ~ 20 years ago, and after a long road of development, the first flight-ready unit was a 10 mJ-class system for GEDI’s ISS-based specifications. Furthermore, no adjustment in drive parameters has been required nor significant decay detected after 4 years of near continuous operation of 3 on-board lasers, which were designed for a 2-year mission. We report on the GEDI laser design process, their on-orbit performance, the major lessons learned, and some critical insight into our in-house flight quality development process that enabled their delivery within budget, schedule, and low risk extended mission life capability.

D. Barry Coyle↗

Toward a balanced assessment of collinearity diagnostics

The present investigation is concerned with a review of the foundations upon which regression methodology is based, taking into account a study of regression diagnostics conducted by Belsey et al. (1980). It is found that one of the most difficult and controversial problems facing data analysts is related to redundant predictor variables in a regression analysis. Collinearity diagnostics are only meaningful when interpreted in terms of 'basic variables' which are 'structurally interpretable'. Conflicting perspectives are discussed, giving attention to the role of centering when diagnosing collinearity. The definition of collinearity and collinearity measures are considered along with questions regarding 'structural interpretability' as a universally accepted principle in model formulation, and the importance of the detection of collinearity with the constant term.

Gunst, R. F.↗

Interference-free measurements of the subsonic aerodynamics of slanted-base ogive cylinders

Drag, lift, pitching moment, and base-pressure measurements have been made, free of support interference, on a range of slanted-base ogive cylinders, using the NASA Langley Research Center 13-in magnetic suspension and balance system. Test Mach numbers were in the range 0.04-0.2. Two types of wake flow were observed, a quasi-symmetric turbulent closure or a longitudinal vortex flow. Aerodynamic characteristics differ dramatically between the two wake types. Drag measurements are shown to be in agreement with previous tests. A hysteretic behavior of the wake with varying Reynold's number has been discovered for the 45-deg base. An interaction between forebody boundary-layer state and wake flow and base pressures has been detected for higher slant angles.

Britcher, Colin P.↗

Impact of lossy compression on diagnostic accuracy of radiographs for periapical lesions

OBJECTIVES: The purpose of this study was to evaluate the lossy Joint Photographic Experts Group compression for endodontic pretreatment digital radiographs. STUDY DESIGN: Fifty clinical charge-coupled device-based, digital radiographs depicting periapical areas were selected. Each image was compressed at 2, 4, 8, 16, 32, 48, and 64 compression ratios. One root per image was marked for examination. Images were randomized and viewed by four clinical observers under standardized viewing conditions. Each observer read the image set three times, with at least two weeks between each reading. Three pre-selected sites per image (mesial, distal, apical) were scored on a five-scale score confidence scale. A panel of three examiners scored the uncompressed images, with a consensus score for each site. The consensus score was used as the baseline for assessing the impact of lossy compression on the diagnostic values of images. The mean absolute error between consensus and observer scores was computed for each observer, site, and reading session. RESULTS: Balanced one-way analysis of variance for all observers indicated that for compression ratios 48 and 64, there was significant difference between mean absolute error of uncompressed and compressed images (P <.05). After converting the five-scale score to two-level diagnostic values, the diagnostic accuracy was strongly correlated (R (2) = 0.91) with the compression ratio. CONCLUSION: The results of this study suggest that high compression ratios can have a severe impact on the diagnostic quality of the digital radiographs for detection of periapical lesions.

NASA Discipline Space Human Factors↗

Further Studies on the Physical and Biogeochemical Causes for Large Interannual Changes in the Patagonian Shelf Spring-Summer Phytoplankton Bloom Biomass

A very strong and persistent phytoplankton bloom was observed by ocean color satellites during September - December 2003 along the northern Patagonian shelf. The 2003 bloom had the highest extent and chlorophyll a (Chl-a) concentrations of the entire Sea-viewing Wide Field-of-view Sensor (SeaWiFS) period (1997 to present). SeaWiFS-derived Chl-a exceeded 20 mg/cu m in November at the bloom center. The bloom was most extensive in December when it spanned more than 300 km across the shelf and nearly 900 km north-south (35degS to 43degS). The northward reach and the deep penetration on the shelf of the 2003 bloom were quite anomalous when compared with other years, which showed the bloom more confined to the Patagonian shelf break (PSB). The PSB bloom is a conspicuous austral spring-summer feature detected by ocean color satellites and its timing can be explained using the Sverdrup critical depth theory. Based on high-resolution numerical simulations, in situ and remote sensing data, we provide some suggestions for the probable mechanisms responsible for that large interannual change of biomass as seen by ocean color satellites. Potential sources of macro and micro (e.g., Fe) nutrients that sustain the high phytoplankton productivity of the Patagonian shelf waters are identified, and the most likely physical processes that maintain the nutrient balance in the region are discussed.

Signorini, Sergio R.↗

Magnetospheric Multiscale Observations of the Electron Diffusion Region of Large Guide Field Magnetic Reconnection

We report observations from the Magnetospheric Multiscale (MMS) satellites of a large guide field magnetic reconnection event. The observations suggest that two of the four MMS spacecraft sampled the electron diffusion region, whereas the other two spacecraft detected the exhaust jet from the event. The guide magnetic field amplitude is approximately 4 times that of the reconnecting field. The event is accompanied by a significant parallel electric field (E(sub parallel lines) that is larger than predicted by simulations. The high-speed (approximately 300 km/s) crossing of the electron diffusion region limited the data set to one complete electron distribution inside of the electron diffusion region, which shows significant parallel heating. The data suggest that E(sub parallel lines) is balanced by a combination of electron inertia and a parallel gradient of the gyrotropic electron pressure.

Eriksson, S.↗

Subsurface Cl-bearing salts as potential contributors to recurring slope lineae (RSL) on Mars

We report laboratory experimental results that support a brine-related hypothesis for the recurring slope lineae (RSL) on Mars in which the subsurface Cl-salts, i.e., hydrous chlorides and oxychlorine salts (HyCOS) are the potential source materials. Our experiments revealed that within the observed RSL temperature window TRSL (250–300 K), the deliquescence of HyCOS could occur in relative humidity ranges (RH≥22%–46%) much lower than those for hydrous (Mg, Fe)-sulfates (RH≥75%–96%). In addition, we demonstrated that the RH values kept by common HyCOS and hydrous sulfates in enclosures have a general trend as RH(sulfates) > RH(perchlorates) > RH(chlorides) (with same type of cation) in wide T range. It means that the required RH range for a Cl-bearing salt to deliquescence can be satisfied by a co-existing salt of different type, e.g., in the subsurface layers of mixed salts on Mars. Furthermore, we found a strong temperature dependence of the deliquescence rates for all tested HyCOS, e.g., a duration of 1–5 sols for all HyCOS at the high end (300 K) of TRSL, and of 20–70 sols for all tested HyCOS (except NaClO4·H2O) at the low end (250 K) of TRSL, which is consistent with the observed seasonal behavior of RSL on Mars. From a mass-balance point of view, the currently observed evidences on Mars do not support a fully-brine-wetted track model, thus we suggest a brine-triggered granular-flow model for the most RSL. Considering the recurrence of RSL in consecutive martian years, our experimental results support the rehydration of remnant HyCOS layers during a martian cold season through H2O vapor-to-salt direct interaction. We found that the evidences of HyCOS rehydration under Mars relevant P-T-RH conditions are detectable in a few minutes by in situ Raman spectroscopy. This rehydration would facilitate the recharge of H2O back into subsurface HyCOS, which could serve as the source material to trigger RSL in a subsequent warm season. The major limiting factor for this rehydration is the H2O supply, i.e., the H2O vapor density carried by current Mars atmospheric circulation and the diffusion rate of H2O vapor into the salt-rich subsurface in a cold season. In a worst-case scenario, these H2O supplies can support a maximum increase of hydration degrees of two for totally dehydrated HyCOS, whereas the full rehydration of subsurface HyCOS layers can be easily reached during a>30° obliquity period that has H2O vapor density 10× to 20× times the value of current obliquity. Overall, our results imply the existence of a large amount of Cl-bearing salts in the subsurface at RSL sites.

Alian Wang↗

Test particle simulation study of whistler wave packets observed near Comet Giacobini-Zinner

Nonlinear interactions of water group ions with large-amplitude whistler wave packets detected at the leading edge of steepened magnetosonic waves observed near Comet Giacobini-Zinner (GZ) are studied using test particle simulations of water-ion interactions with a model wave based on GZ data. Some of the water ions are found to be decelerated in the steepened portion of the magnetosonic wave to the resonance velocity with the whistler wave packets. Through resonance and related nonlinear interaction with the large-amplitude whistler waves, the water ions become trapped by the packet. An energy balance calculation demonstrates that the trapped ions lose their kinetic energy during the trapped motion in the packet. Thus, the nonlinear trapping motion in the wave structure leads to effective energy transfer from the water group ions to the whistler wave packets in the leading edge of the steepened MHD waves.

Kaya, N.↗