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At least 271 records · Page 15

Virtual tower measurements during the American WAKE ExperimeNt (AWAKEN)

Dual-Doppler lidar measurements were made during the American WAKE ExperimeNt to provide height-resolved measurements of wind speed and direction at multiple locations immediately south of the leading row turbines in the King Plains wind farm in Oklahoma. These so-called virtual tower measurements were performed to characterize the inflow into the wind farm and to assess possible upwind blockage effects due to the collective action of the wind farm. The campaign was conducted from 12 November 2022 to 17 October 2023, during which time 14 unique virtual tower locations were sampled with heights ranging from 240 to 490 m AGL. The wind retrieval algorithm provided estimates of the horizontal winds and their uncertainties with a vertical resolution of about 10 m, while also accounting for the tilt of the lidar platform. The virtual tower results are compared to collocated lidar wind profiling data at the A1 site, which was located roughly 2.4 rotor diameters south of the nearest turbine. The wind speed difference between the wind profiler and the virtual tower was found to be quite sensitive to atmospheric stability and wind direction below 250 m AGL. The largest differences were observed for inflow under stable conditions, where the profiler wind speeds were observed to be about 22% lower than the virtual tower near hub height. These results suggest that there are persistent horizontal gradients in the flow upwind of the wind farm which result in biased estimates using standard ground-based lidar wind profiling methods.

17 WIND ENERGY↗

Simulated Microgravity Regulates Gene Transcript Profiles of 2T3 Preosteoblasts: Comparison of the Random Positioning Machine and the Rotating Wall Vessel Bioreactor

Microgravity of spaceflight induces bone loss due in part to decreased bone formation by osteoblasts. We have previously examined the microgravity-induced changes in gene expression profiles in 2T3 preosteoblasts using the Random Positioning Machine (RPM) to simulate microgravity conditions. Here, we hypothesized that exposure of preosteoblasts to an independent microgravity simulator, the Rotating Wall Vessel (RWV), induces similar changes in differentiation and gene transcript profiles, resulting in a more confined list of gravi-sensitive genes that may play a role in bone formation. In comparison to static 1g controls, exposure of 2T3 cells to RWV for 3 days inhibited alkaline phosphatase activity, a marker of differentiation, and downregulated 61 genes and upregulated 45 genes by more than two-fold as shown by microarray analysis. The microarray results were confirmed with real time PCR for downregulated genes osteomodulin, bone morphogenic protein 4 (BMP4), runx2, and parathyroid hormone receptor 1. Western blot analysis validated the expression of three downregulated genes, BMP4, peroxiredoxin IV, and osteoglycin, and one upregulated gene peroxiredoxin I. Comparison of the microarrays from the RPM and the RWV studies identified 14 gravi-sensitive genes that changed in the same direction in both systems. Further comparison of our results to a published database showing gene transcript profiles of mechanically loaded mouse tibiae revealed 16 genes upregulated by the loading that were shown to be downregulated by RWV and RPM. These mechanosensitive genes identified by the comparative studies may provide novel insights into understanding the mechanisms regulating bone formation and potential targets of countermeasure against decreased bone formation both in astronauts and in general patients with musculoskeletal disorders.

Patel, Mamta J.↗

Differential DNA methylation and metabolite profiling of Atlantic killifish (Fundulus heteroclitus) from the New Bedford Harbor Superfund site

Atlantic killifish (Fundulus heteroclitus) is a valuable model in evolutionary toxicology to study how the interactions between genetic and environmental factors serve the adaptive ability of organisms to resist chemical pollution. Killifish populations inhabiting environmental toxicant-contaminated New Bedford Harbor (NBH) show phenotypes tolerant to polychlorinated biphenyls (PCBs) and differences at the transcriptional and genomic levels. However, limited research has explored epigenetic alterations and metabolic effects in NBH killifish. To identify the involvement of epigenetic and metabolic regulation in the adaptive response of killifish, we investigated tissue- and sex-specific differences in global DNA methylation and metabolomic profiles of NBH killifish populations, compared to sensitive populations from a non-polluted site, Scorton Creek (SC). The results revealed that liver-specific global DNA hypomethylation and differential metabolites were evident in fish from NBH compared with those from SC. The sex-specific differences were not greater than the tissue-specific differences. We demonstrated liver-specific enriched metabolic pathways (e.g., amino acid metabolic pathways converged into the urea cycle and glutathione metabolism), suggesting possible crosstalk between differential metabolites and DNA hypomethylation in the livers of NBH killifish. Additional investigation of methylated gene regions is necessary to understand the functional role of DNA hypomethylation in the regulation of enzyme-encoding genes associated with metabolic processes and physiological changes in NBH populations.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Hydrodynamic modeling of plasma channel systems for laser plasma accelerators

Structured plasma channels are an essential technology for driving high-gradient, plasma-based acceleration and control of electron and positron beams for advanced concepts accelerators. Laser and gas technologies can permit the generation of long plasma columns known as hydrodynamic, optically-field-ionized (HOFI) channels, which feature low on-axis densities and steep walls. By carefully selecting the background gas and laser properties, one can generate narrow, tunable plasma channels for guiding high intensity laser pulses. Here, we present on the development of simulations of HOFI channels using the FLASH code, a publicly available radiation hydrodynamics code. We explore sensitivities of the channel evolution to laser profile, intensity, and background gas conditions, and identify relevant scalings with laser intensity through a range of practical channel delays.

Accelerators↗

Directional Laplacian Centrality for Cyber Situational Awareness

Cyber operations is drowning in diverse, high-volume, multi-source data. To get a full picture of current operations and identify malicious events and actors, analysts must see through data generated by a mix of human activity and benign automated processes. Although many monitoring and alert systems exist, they typically use signature-based detection methods. We introduce a general method rooted in spectral graph theory to discover patterns and anomalies without a priori knowledge of signatures. We derive and propose a new graph-theoretic centrality measure based on the derivative of the graph Laplacian matrix in the direction of a vertex. To build intuition about our measure, we show how it identifies the most central vertices in standard network datasets and compare to other graph centrality measures. Finally, we focus our attention on studying its effectiveness in identifying important IP addresses in network flow data. Using both real and synthetic network flow data, we conduct several experiments to test our measure’s sensitivity to two types of injected attack profiles and show that vertices participating in injected attack profiles exhibit noticeable changes in our centrality measures, even when the injected anomalies are relatively small, and in the presence of simulated network dynamics.

45 MILITARY TECHNOLOGY, WEAPONRY, AND NATIONAL DEF↗

Comparative analysis of the functional properties of human and mouse ferroportin

Ferroportin (Fpn)—expressed at the plasma membrane of macrophages, enterocytes, and hepatocytes—mediates the transfer of cellular iron into the blood plasma. Under the control of the iron-regulatory hormone hepcidin, Fpn serves a critical role in systemic iron homeostasis. Although we have previously characterized human Fpn, a great deal of research in iron homeostasis and disorders uses mouse models. By way of example, the flatiron mouse, a model of classical ferroportin disease, bears the mutation H32R in Fpn and is characterized by systemic iron deficiency and macrophage iron retention. The flatiron mouse also appears to exhibit a manganese phenotype, raising the possibility that mouse Fpn serves a role in manganese metabolism. At odds with this observation, we have found that human Fpn does not transport manganese, so we considered the possibility that a species difference could explain this discrepancy. We tested the hypothesis that mouse but not human Fpn can transport manganese and performed a comparative analysis of mouse and human Fpn. We examined the functional properties of human Fpn, mouse Fpn, and mutant mouse Fpn by using radiotracer assays in RNA-injected Xenopus oocytes. We found that neither mouse nor human Fpn transports manganese. Mouse and human Fpn share identical properties with respect to substrate profile, calcium dependence, optimal pH, and hepcidin sensitivity. We have also demonstrated that Fpn is not an ATPase pump. Our findings validate the use of mouse models of ferroportin function in iron homeostasis and disease.

Cell Biology↗

Hidden Markov Model: a shortest unique representative approach to detect the protein toxins, virulence factors and antibiotic resistance genes

Objective: Currently, next generation sequencing (NGS) is widely used to decode potential novel or variant pathogens both in emergent outbreaks and in routine clinical practice. However, the efficient identification of novel or diverged pathogenomic compositions remains a big challenge. It is especially true for short DNA sequence fragments from NGS, since sequence similarity searching is vulnerable to false negatives or false positives, as is mismatching or matching with unrelated proteins. Therefore, this study aimed to establish a bioinformatics approach that can generate unique motif sequences for profiling searching, resulting in high specificity and sensitivity. Results: In this study, we introduced a Shortest Unique Representative Hidden Markov Model (HMM) approach to identify bacterial toxin, virulence factor (VF), and antimicrobial resistance (AR) in short sequence reads. We first construct unique representative domain sequences of toxin genes, VFs, and ARs to avoid potential false positives, and then to use HMM models to accurately identify potential toxin, VF, and AR fragments. The benchmark shows this approach can achieve relatively high specificity and sensitivity if the appropriate cutoff value is applied. Our approach can be used to recognize the protein sequences of known toxins and pathogens, identifies their common characteristics and then searches for similar sequences in other organisms.

59 BASIC BIOLOGICAL SCIENCES↗

Snow backscatter in the 1-8 GHz region

The 1-8 GHz microwave active spectrometer system was used to measure the backscatter response of snow covered ground. The scattering coefficient was measured for all linear polarization combinations at angles of incidence between nadir and 70 deg. Ground truth data consisted of soil moisture, soil temperature profile, snow depth, snow temperature profile, and snow water equivalent. The radar sensitivity to snow water equivalent increased in magnitude with increasing frequency and was almost angle independent for angles of incidence higher than 30 deg, particularly at the higher frequencies. In the 50 deg to 70 deg angular range and in the 6 to 8 GHz frequency range, the sensitivity was typically between -0.4 dB/.1 g/sq cm and -0.5 dB/,1 g/sq cm, and the associated linear correlation coefficient had a magnitude of about 0.8.

Ulaby, F. T.↗

Development of a model and computer code to describe solar grade silicon production processes

Mechanisms for the SiCl4/Na and SiF4/Na reaction systems were examined. Reaction schemes which include 25 elementary reactions were formulated for each system and run to test the sensitivity of the computed concentration and temperature profiles to the values given estimated rate coefficients. It was found that, for SiCl4/Na, the rate of production of free Si is largely mixing-limited for reasonable rate coefficient estimates. For the SiF4/Na system the results indicate that the endothermicities of many of the reactions involved in producing Si from SiF4/Na cause this system to be chemistry-limited rather than mixing-limited.

Gould, R. K.↗

The Pinhole/Occulter Facility

A large occulting system in space can be used for high resolution X-ray observations and for large aperture coronagraphic observations in visible and UV light. The X-ray observations can combine high angular resolution in hand (10 keV) X-radiation with the high sensitivity of a multiple pinhole camera, and can permit sensitive observations of bremsstrahlung from nonthermal particles in the corona. The large aperture coronagraphs have two major advantages: high angular resolution and good photon collection. This will permit observations of small scale structures in the corona for the first time and will give sufficient counting rates above the coronal background rates for sensitive diagnostic analysis of intensities and line profiles for coronal structures in the solar wind acceleration region. The technical basis for performing observations with a large occulting system in these three wavelength ranges is described as well as a pinhole/occulter facility presently being considered for Spacelab. Some indications about future developments are included.

Hudson, H. S.↗

Further observational studies of the high velocity molecular source /'plateau'/ in Orion

Sensitive measurements have been made of the profiles of various molecular lines in the direction of the BN/KL infrared complex in Orion. Similar line shapes are found for the high velocity wings ('plateau') of most lines observed. The position of the high velocity source was found in SO and HCO(+) relative to the SiO maser. A search for high velocity emission in other sources was unsuccessful.

Kuiper, T. B. H.↗

Remote sensing by infrared heterodyne spectroscopy

The use of infrared heterodyne spectrocopy for the study of planetary atmospheres is discussed. Infrared heterodyne spectroscopy provides a convenient and sensitive method for measuring the true intensity profiles of atmospheric spectral lines. Application of radiative transfer theory to measured lineshapes can then permit the study of molecular abundances, temperatures, total pressures, excitation conditions, and dynamics of the regions of line formation. The theory of formation of atmospheric spectral lines and the retrieval of the information contained in these molecular lines is illustrated. Notable successes of such retrievals from infrared heterodyne measurements on Venus, Mars, Jupiter and the Earth are given. A discussion of developments in infrared heterodyne technology is also presented.

Kostiuk, T.↗

Remote sensing by IR heterodyne spectroscopy

The use of infrared heterodyne spectroscopy for the study of planetary atmospheres is discussed. Infrared heterodyne spectroscopy provides a convenient and sensitive method for measuring the true intensity profiles of atmospheric spectral lines. Application of radiative transfer theory to measured lineshapes can then permit the study of molecular abundances, temperatures, total pressures, excitation conditions, and dynamics of the regions of line formation. The theory of formation of atmospheric spectral lines and the retrieval of the information contained in these molecular lines is illustrated. Notable successes of such retrievals from infrared heterodyne measurements on Venus, Mars, Jupiter and the earth are given. A discussion of developments in infrared heterodyne technology is also presented. Previously announced in STAR as N83-28551

Kostiuk, T.↗

Phosphine photochemistry in the atmosphere of Saturn

The photochemistry of PH3 in the atmosphere of Saturn is studied, including the effects of coupling with the photochemistries of NH3 and hydrocarbons. The vertical concentration of PH3 is found to be extremely sensitive to the eddy diffusion coefficient (K) profile used. If K is roughly 10,000 sq cm/sec in the upper troposphere, PH3 should be depleted there with a scale height of about 3.5 km. An upper limit of 100,000 sq cm/sec is estimated for K. If the gas phase concentration of P2H4 can be neglected, production of molecular phophorus is very unlikely unless the spin-forbidden recombination reaction PH+H2+M - PH3+M occurs with an exceptionally low rate. Coupling of PH3 and hydrocarbon photochemistries is very important. Possible observable amounts of the organophosphorus molecules CH3PH2 and HCP are tentatively predicted.

Kaye, J. A.↗

Coupling of the radiative, convective, and surface fluxes over the equatorial Pacific

An idealized energy-balance model for a closed tropical circulation is first presented to illustrate the coupling between the net tropospheric cooling, the surface fluxes, and the mean subsidence away from the precipitation zones. Then a one-dimensional diagnostic model and a radiation model with boundary layer clouds are combined to explore this coupling for a specific region, using mean sounding data over the tropical Pacific. The radiatively driven subsidence rate at the top of the convective boundary layer is approximately 35 mb/day and is largely independent of boundary layer cloud fraction. The sensitivity of the corresponding convective heat flux profiles to the mass divergence profile and cloud fraction within the boundary layer is explored. Reasonable assumptions give realistic surface sensible and latent heat fluxes for this region of approximately 10 and 130 W/sq m. The paper illustrates the important background climatic control of the radiation field on the tropical surface fluxes.

Ridgway, W.↗

Kelvin wave-induced trace constituent oscillations in the equatorial stratosphere

Kelvin wave induced oscillations in ozone (O3), water vapor (H2O), nitric acid (HNO3) and nitrogen dioxide (NO2) in the equatorial stratosphere are analyzed using Limb Infrared Monitor of the Stratosphere (LIMS) data. Power and cross-spectrum analyses reveal coherent eastward propagating zonal wave 1 and 2 constituent fluctuations, due to the influence of Kelvin waves previously documented in the LIMS data. Comparison is made between a preliminary and the archival versions of the LIMS data; significant differences are found, demonstrating the sensitivity of constituent retrievals to derived temperature profiles. Because Kelvin waves have vanishing meridional velocity, analysis of tracer transport in the meridional plane is substantially simplified. Kelvin wave vertical advection is demonstrated by coherent, in-phase temperature-tracer oscillations, co-located near regions of strong background vertical gradients.

Randel, William J.↗

Spatial variability of summer Florida precipitation and its impact on microwave radiometer rainfall-measurement systems

Three-dimensional radar data for three summer Florida storms are used as input to a microwave radiative transfer model. The model simulates microwave brightness observations by a 19-GHz, nadir-pointing, satellite-borne microwave radiometer. The statistical distribution of rainfall rates for the storms studied, and therefore the optimal conversion between microwave brightness temperatures and rainfall rates, was found to be highly sensitive to the spatial resolution at which observations were made. The optimum relation between the two quantities was less sensitive to the details of the vertical profile of precipitation. Rainfall retrievals were made for a range of microwave sensor footprint sizes. From these simulations, spatial sampling-error estimates were made for microwave radiometers over a range of field-of-view sizes. The necessity of matching the spatial resolution of ground truth to radiometer footprint size is emphasized. A strategy for the combined use of raingages, ground-based radar, microwave, and visible-infrared (VIS-IR) satellite sensors is discussed.

Turner, B. J.↗

Comparisons of the Vertical Development of Deep Tropical Convection and Associated Lightning Activity on a Global Basis

Simultaneous radar (13.8 Ghz) and lightning (Lightning Imaging Sensor) observations from the NASA TRMM (Tropical Rainfall Measuring Mission) spacecraft afford a new opportunity to examine differences in tropical continental and oceanic convection on a global basis, The 250 meter vertical resolution of the radar data and the approximately 17 dBZ sensitivity are well suited to providing vertical profiles of radar reflectivity over the entire tropical belt. The reflectivity profile has been shown in numerous local ground-based studies to be a good indicator of both updraft velocity and electrical activity. The radar and lightning observations for multiple satellite orbits have been integrated to produce global CAPPI's for various altitudes. At 7 km altitude, where mixed phase microphysics is known to be active, the mean reflectivity in continental convection is 10-15 dB greater than the value in oceanic convection. These results provide a sound physical basis for the order-of-magnitude contrast in lightning counts between continental and oceanic convection. These observations still beg the question, however, about the contrast in updraft velocity in these distinct convective regimes.

Williams, E.↗