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At least 271 records · Page 15

The Vertebrate Breed Ontology: Toward Effective Breed Data Standardization

Abstract Background Limited universally-adopted data standards in veterinary medicine hinder data interoperability and therefore integration and comparison; this ultimately impedes the application of existing information-based tools to support advancement in diagnostics, treatments, and precision medicine. Hypothesis/Objectives A single, coherent, logic-based standard for documenting breed names in health, production, and research-related records will improve data use capabilities in veterinary and comparative medicine. Animals No live animals were used. Methods The Vertebrate Breed Ontology (VBO) was created from breed names and related information compiled from the Food and Agriculture Organization of the United Nations, breed registries, communities, and experts, using manual and computational approaches. Each breed is represented by a VBO term that includes breed information and provenance as metadata. VBO terms are classified using description logic to allow computational applications and Artificial Intelligence–readiness. Results VBO is an open, community-driven ontology representing over 19 500 livestock and companion animal breed concepts covering 49 species. Breeds are classified based on community and expert conventions (e.g., cattle breed) and supported by relations to the breed's genus and species indicated by National Center for Biotechnology Information (NCBI) Taxonomy terms. Relationships between VBO terms (e.g., relating breeds to their foundation stock) provide additional context to support advanced data analytics. VBO term metadata includes synonyms, breed identifiers/codes, and attributed cross-references to other databases. Conclusion and Clinical Importance The adoption of VBO as a standard for breed names in databases and veterinary electronic health records enhances veterinary data interoperability and computability, supporting precision medicine.

Veterinary Sciences↗

Binary pseudo-random array standard for extreme ultraviolet lithography tool characterization

Extreme ultraviolet (EUV) imaging tools play a crucial role in EUV lithography. Achieving high accuracy in EUV metrology is essential for advanced semiconductor manufacturing. A thorough characterization of the instrumentation in use is required. Binary pseudo-random arrays (BPRAs) are an established standard for calibrating and characterizing optical instruments in the frequency domain. Here, we expand the BPRA standard to applications in EUV imaging. To extend the technology to the EUV spectral range, a high-resolution BPRA target with the smallest feature size of 40 nm is developed. The EUV BPRA target establishes an in situ and portable calibration and alignment standard for EUV imaging. The target is patterned by means of electron-beam lithography, using a nickel absorber with a thickness of 39 nm. The substrate is a 4″ silicon wafer with a molybdenum/silicon multilayer coating. To demonstrate the efficacy of the target and develop the instrument calibration protocol, the target is imaged on the Sharp Hyper-NA Actinic Reticle Review Project EUV mask microscope. Power spectral density (PSD) data are presented. The characteristics of the imaging system are imprinted on the PSD. The modulation transfer function is extracted from the PSD data. A partially coherent imaging model is used as a reference to the experimental results.

BPRA↗

Virus species names have been standardized; virus names remain unchanged

Virus taxonomy, comprising classification and nomenclature, is regulated by the International Committee on Taxonomy of Viruses (ICTV). Taxon names are standardized to facilitate recognition and communication, with defined suffixes for each rank (e.g., the names of orders, families, and genera end in -virales, -viridae, and -virus, respectively). However, until recently, a standard format for species names was lacking. In 2021, following extensive discussion and community consultation, the ICTV decided to adopt a standardized binomial (Linnaean) format for virus species names, consisting of the genus name followed by a "freeform" species epithet. Previously assigned virus species names that were non-compliant with the binomial format have been fully updated. In contrast to taxon names regulated by the ICTV, the names of viruses, or "common" names, such as yellow fever virus or human immunodeficiency virus, are not under the remit of the ICTV and have not been changed.

Zerbini, F Murilo↗

Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities

Microbiome samples are inherently defined by the environment in which they are found. Therefore, data that provide context and enable interpretation of measurements produced from biological samples, often referred to as metadata, are critical. Important contributions have been made in the development of community-driven metadata standards; however, these standards have not been uniformly embraced by the microbiome research community. To understand how these standards are being adopted, or the barriers to adoption, across research domains, institutions, and funding agencies, the National Microbiome Data Collaborative (NMDC) hosted a workshop in October 2019. This report provides a summary of discussions that took place throughout the workshop, as well as outcomes of the working groups initiated at the workshop.

54 ENVIRONMENTAL SCIENCES↗

Prospects for beyond the Standard Model physics searches at the Deep Underground Neutrino Experiment: DUNE Collaboration

Abstract The Deep Underground Neutrino Experiment (DUNE) will be a powerful tool for a variety of physics topics. The high-intensity proton beams provide a large neutrino flux, sampled by a near detector system consisting of a combination of capable precision detectors, and by the massive far detector system located deep underground. This configuration sets up DUNE as a machine for discovery, as it enables opportunities not only to perform precision neutrino measurements that may uncover deviations from the present three-flavor mixing paradigm, but also to discover new particles and unveil new interactions and symmetries beyond those predicted in the Standard Model (SM). Of the many potential beyond the Standard Model (BSM) topics DUNE will probe, this paper presents a selection of studies quantifying DUNE’s sensitivities to sterile neutrino mixing, heavy neutral leptons, non-standard interactions, CPT symmetry violation, Lorentz invariance violation, neutrino trident production, dark matter from both beam induced and cosmogenic sources, baryon number violation, and other new physics topics that complement those at high-energy colliders and significantly extend the present reach.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Evaluation of Cathode Materials with Lithium-Metal Anodes: Baseline Performance and Protocol Standardization of Coin Cells

The collaborative evaluation of electrode materials across multiple research entities requires standardized electrochemical testing protocols to produce reliable, one-to-one comparisons between different systems of interest. Similar to the work done by Long et al. on protocol standardization for coin-cell testing with graphite anodes [J. Electrochem. Soc., 163, A2999, (2016)], here we introduce two standardized testing protocols designed to quickly evaluate important electrochemical properties of cathode materials using lithium-metal anodes. The two protocols measure kinetic and thermodynamic capacity losses, rate- and voltage-dependent cycling capacities, instabilities at high voltage and high cycling rate, and overpotentials at various states of charge. We then apply these protocols to four commercially available cathode materials to establish benchmark performance metrics that can be used to screen and evaluate new cathode materials.

25 ENERGY STORAGE↗

Standard experimental paradigm designs and data exclusion practices in cognitive psychology can inadvertently introduce systematic “shadow” biases in participant samples

Abstract Standard cognitive psychology research practices can introduce inadvertent sampling biases that reduce the reliability and generalizability of the findings. Researchers commonly acknowledge and understand that any given study sample is not perfectly generalizable, especially when implementing typical experimental constraints (e.g., limiting recruitment to specific age ranges or to individuals with normal color vision). However, less obvious systematic sampling constraints, referred to here as “shadow” biases, can be unintentionally introduced and can easily go unnoticed. For example, many standard cognitive psychology study designs involve lengthy and tedious experiments with simple, repetitive stimuli. Such testing environments may 1) be aversive to some would-be participants (e.g., those high in certain neurodivergent symptoms) who may self-select not to enroll in such studies, or 2) contribute to participant attrition, both of which reduce the sample’s representativeness. Likewise, standard performance-based data exclusion efforts (e.g., minimum accuracy or response time) or attention checks can systematically remove data from participants from subsets of the population (e.g., those low in conscientiousness). This commentary focuses on the theoretical and practical issues behind these non-obvious and often unacknowledged “shadow” biases, offers a simple illustration with real data as a proof of concept of how applying attention checks can systematically skew latent/hidden variables in the included population, and then discusses the broader implications with suggestions for how to manage and reduce, or at a minimum acknowledge, the problem.

Siritzky, Emma M.↗

Radiative cooling textiles using industry-standard particle-free nonporous micro-structured fibers

Abstract Thermal radiation is a major dissipative pathway for heat generated by the human body and offers a significant thermoregulation mechanism over a wide range of conditions. We could use this in garment design to enhance personal cooling, which can improve the wearing comfort of garments or even result in energy savings in buildings. At present, however, radiative cooling has received insufficient attention in commercial design and production of textiles for wearable garments. Textiles that efficiently transmit the radiative heat were recently demonstrated, but either do not utilize standard weaving and knitting processes for wearable garments or require substantial process modifications. Here, we demonstrate the design and implementation of large-scale radiative cooling textiles for localized cooling management and enhanced thermal comfort using industry-standard particle-free nonporous micro-structured fibers that are fully compatible with standard textile materials and production methods. The micro-structured fibers, yarns and fabrics are part of a hierarchical photonic structure design that renders the textiles highly infrared transparent (up to > 0.8) while assuring visual opacity (up to 0.99). We design radiative cooling textiles with first-principles electromagnetic methods and fabricate them using commercial textile materials and formation facilities. Our “fabless” approach is confirmed by very good quantitative agreement between design and measurements. The resulting fabrics exhibit wearability properties expected of wearable textiles, and lower skin temperature by ≥ 3 °C compared to conventional textiles, which offers the potential for > 30 % energy savings in buildings and increases wearing comfort by significantly reducing the reliance on latent heat dissipation for thermoregulation.

Catrysse, Peter B.↗

Chemical Blast Standard (1 kg)

Chemical explosions create blast waves with large overpressure disturbances. It is important to develop a standard blast model based on data to accurately predict acoustic blast-wave amplitudes near detonations and invert for explosion energy from distant observations of blast-wave signals. However, open data from large, controlled chemical explosions with reliable ground truth can be challenging to find. The lack of access to such data could limit the number of contributions to related research and potentially stifle the rate of discoveries or validation of existing models. Here, to address these data scarcity problem, we have curated and compiled a standardized set of 817 blast-wave waveforms from 19 distinct high-explosive events. The blast-wave waveforms are standardized to a 1 kg trinitrotoluene explosion using scaling laws and corrections for location effects. A brief overview of the dataset is presented along with explosion feature models as well as recommendations for extracting explosion features. The resulting dataset is distributed to an open repository in both Seismic Analysis Code and pandas DataFrame formats containing the waveforms, the scaled distances, and the sample rates.

58 GEOSCIENCES↗

Cost Effectiveness of ASHRAE Standard 90.1-2016 for the State of Rhode Island

This report describes the methodology and results of a state cost-effectiveness analysis of ASHRAE Standard 90.1-2016. Moving to the Standard 90.1-2016 edition from Standard 90.1-2013 is found to be cost-effective for the state. Annual energy cost savings, added construction costs, and life-cycle costs are all described and presented here for various building types and climate zones.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Cost Effectiveness of ASHRAE Standard 90.1-2016 for the State of South Carolina

This report describes the methodology and results of a state cost-effectiveness analysis of ASHRAE Standard 90.1-2016. Moving to the Standard 90.1-2016 edition from Standard 90.1-2013 is found to be cost-effective for the state. Annual energy cost savings, added construction costs, and life-cycle costs are all described and presented here for various building types and climate zones.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Cost Effectiveness of ASHRAE Standard 90.1-2016 for the State of South Dakota

This report describes the methodology and results of a state cost-effectiveness analysis of ASHRAE Standard 90.1-2016. Moving to the Standard 90.1-2016 edition from Standard 90.1-2013 is found to be cost-effective for the state. Annual energy cost savings, added construction costs, and life-cycle costs are all described and presented here for various building types and climate zones.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Cost Effectiveness of ASHRAE Standard 90.1-2016 for the State of Tennessee

This report describes the methodology and results of a state cost-effectiveness analysis of ASHRAE Standard 90.1-2016. Moving to the Standard 90.1-2016 edition from Standard 90.1-2013 is found to be cost-effective for the state. Annual energy cost savings, added construction costs, and life-cycle costs are all described and presented here for various building types and climate zones.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Cost Effectiveness of ASHRAE Standard 90.1-2016 for the State of Utah

This report describes the methodology and results of a state cost-effectiveness analysis of ASHRAE Standard 90.1-2016. Moving to the Standard 90.1-2016 edition from Standard 90.1-2013 is found to be cost-effective for the state. Annual energy cost savings, added construction costs, and life-cycle costs are all described and presented here for various building types and climate zones.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Cost Effectiveness of ASHRAE Standard 90.1-2016 for the State of Vermont

This report describes the methodology and results of a state cost-effectiveness analysis of ASHRAE Standard 90.1-2016. Moving to the Standard 90.1-2016 edition from Standard 90.1-2013 is found to be cost-effective for the state. Annual energy cost savings, added construction costs, and life-cycle costs are all described and presented here for various building types and climate zones.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Cost Effectiveness of ASHRAE Standard 90.1-2016 for the State of Virginia

This report describes the methodology and results of a state cost-effectiveness analysis of ASHRAE Standard 90.1-2016. Moving to the Standard 90.1-2016 edition from Standard 90.1-2013 is found to be cost-effective for the state. Annual energy cost savings, added construction costs, and life-cycle costs are all described and presented here for various building types and climate zones.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Cost Effectiveness of ASHRAE Standard 90.1-2016 for the State of West Virginia

This report describes the methodology and results of a state cost-effectiveness analysis of ASHRAE Standard 90.1-2016. Moving to the Standard 90.1-2016 edition from Standard 90.1-2013 is found to be cost-effective for the state. Annual energy cost savings, added construction costs, and life-cycle costs are all described and presented here for various building types and climate zones.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Cost Effectiveness of ASHRAE Standard 90.1-2016 for the State of Wyoming

This report describes the methodology and results of a state cost-effectiveness analysis of ASHRAE Standard 90.1-2016. Moving to the Standard 90.1-2016 edition from Standard 90.1-2013 is found to be cost-effective for the state. Annual energy cost savings, added construction costs, and life-cycle costs are all described and presented here for various building types and climate zones.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗