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At least 271 records · Page 15

CPTAC Assay Portal: a repository of targeted proteomic assays

To address these issues, the Clinical Proteomic Tumor Analysis Consortium (CPTAC) of the National Cancer Institute (NCI) has launched an Assay Portal (http://assays.cancer.gov) to serve as a public repository of well-characterized quantitative, MS-based, targeted proteomic assays. The purpose of the CPTAC Assay Portal is to facilitate widespread adoption of targeted MS assays by disseminating SOPs, reagents, and assay characterization data for highly characterized assays. A primary aim of the NCI-supported portal is to bring together clinicians or biologists and analytical chemists to answer hypothesis-driven questions using targeted, MS-based assays. Assay content is easily accessed through queries and filters, enabling investigators to find assays to proteins relevant to their areas of interest. Detailed characterization data are available for each assay, enabling researchers to evaluate assay performance prior to launching the assay in their own laboratory.

Environmental Molecular Sciences Laboratory↗

The joint automated repository for various integrated simulations (JARVIS) for data-driven materials design

The Joint Automated Repository for Various Integrated Simulations (JARVIS) is an integrated infrastructure to accelerate materials discovery and design using density functional theory (DFT), classical force-fields (FF), and machine learning (ML) techniques. JARVIS is motivated by the Materials Genome Initiative (MGI) principles of developing open-access databases and tools to reduce the cost and development time of materials discovery, optimization, and deployment. The major features of JARVIS are: JARVIS-DFT, JARVIS-FF, JARVIS-ML, and JARVIS-tools. To date, JARVIS consists of ≈40,000 materials and ≈1 million calculated properties in JARVIS-DFT, ≈500 materials and ≈110 force-fields in JARVIS-FF, and ≈25 ML models for material-property predictions in JARVIS-ML, all of which are continuously expanding. JARVIS-tools provides scripts and workflows for running and analyzing various simulations. We compare our computational data to experiments or high-fidelity computational methods wherever applicable to evaluate error/uncertainty in predictions. In addition to the existing workflows, the infrastructure can support a wide variety of other technologically important applications as part of the data-driven materials design paradigm. The JARVIS datasets and tools are publicly available at the website: https://jarvis.nist.gov .

36 MATERIALS SCIENCE↗

Repository scale classification and decomposition of tandem mass spectral data

Various studies have shown associations between molecular features and phenotypes of biological samples. These studies, however, focus on a single phenotype per study and are not applicable to repository scale metabolomics data. Here we report MetSummarizer, a method for predicting (i) the biological phenotypes of environmental and host-oriented samples, and (ii) the raw ingredient composition of complex mixtures. We show that the aggregation of various metabolomic datasets can improve the accuracy of predictions. Since these datasets have been collected using different standards at various laboratories, in order to get unbiased results it is crucial to detect and discard standard-specific features during the classification step. We further report high accuracy in prediction of the raw ingredient composition of complex foods from the Global Foodomics Project.

59 BASIC BIOLOGICAL SCIENCES↗

Use of a Dual-Structure Constitutive Model for Predicting the Long-Term Behavior of an Expansive Clay Buffer in a Nuclear Waste Repository

Expansive soils are suitable as backfill and buffer materials in engineered barrier systems to isolate heat-generating nuclear waste in deep geological formations. The canisters containing nuclear waste would be placed in tunnels excavated at a depth of several hundred meters. The expansive soil should provide enough swelling capacity to support the tunnel walls, thereby reducing the impact of the excavation-damaged zone on the long-term mechanical and flow-barrier performance. In addition to their swelling capacity, expansive soils are characterized by accumulating irreversible strain on suction cycles and by effects of microstructural swelling on water permeability that for backfill or buffer materials can significantly delay the time it takes to reach full saturation. In order to simulate these characteristics of expansive soils, a dual-structure constitutive model that includes two porosity levels is necessary. The authors present the formulation of a dual-structure model and describe its implementation into a coupled fluid flow and geomechanical numerical simulator. The authors use the Barcelona Basic Model (BBM), which is an elastoplastic constitutive model for unsaturated soils, to model the macrostructure, and it is assumed that the strains of the microstructure, which are volumetric and elastic, induce plastic strain to the macrostructure. The authors tested and demonstrated the capabilities of the implemented dual-structure model by modeling and reproducing observed behavior in two laboratory tests of expansive clay. As observed in the experiments, the simulations yielded nonreversible strain accumulation with suction cycles and a decreasing swelling capacity with increasing confining stress. Finally, the authors modeled, for the first time using a dual-structure model, the long-term (100,000 years) performance of a generic heat-generating nuclear waste repository with waste emplacement in horizontal tunnels backfilled with expansive clay and hosted in a clay rock formation. The thermo-hydro-mechanical results of the dual-structure model were compared with those of the standard single-structure BBM. The main difference between the simulation results from the two models is that the dual-structure model predicted a time to fully saturate the expansive clay barrier on the order of thousands of years, whereas the standard single-structure BBM yielded a time on the order of tens of years. These examples show that a dual-structure model, such as the one presented here, is necessary to properly model the thermo-hydro-mechanical behavior of expansive soils.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

TomoBank: a tomographic data repository for computational x-ray science

There is a widening gap between the fast advancement of computational methods for tomographic reconstruction and their successful implementation in production software at various synchrotron facilities. This is due in part to the lack of readily available instrument datasets and phantoms representative of real materials for validation and comparison of new numerical methods. Recent advancements in detector technology made sub-second and multi-energy tomographic data collection possible [1], but also increased the demand to develop new reconstruction methods able to handle in-situ [2] and dynamic systems [3] that can be quickly incorporated in beamline production software [4]. The X-ray Tomography Data Bank, tomoBank, provides a repository of experimental and simulated datasets with the aim to foster collaboration among computational scientists, beamline scientists, and experimentalists and to accelerate the development and implementation of tomographic reconstruction methods for synchrotron facility production software by providing easy access to challenging dataset and their descriptors.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

Cryptonite: A Secure and Performant Data Repository on Public Clouds

Cloud storage has become immensely popular for maintaining synchronized copies of files and for sharing documents with collaborators. However, there is heightened concern about the security and privacy of Cloud-hosted data due to the shared infrastructure model and an implicit trust in the service providers. Emerging needs of secure data storage and sharing for domains like Smart Power Grids, which deal with sensitive consumer data, require the persistence and availability of Cloud storage but with client-controlled security and encryption, low key management overhead, and minimal performance costs. Cryptonite is a secure Cloud storage repository that addresses these requirements using a StrongBox model for shared key management.We describe the Cryptonite service and desktop client, discuss performance optimizations, and provide an empirical analysis of the improvements. Our experiments shows that Cryptonite clients achieve a 40% improvement in file upload bandwidth over plaintext storage using the Azure Storage Client API despite the added security benefits, while our file download performance is 5 times faster than the baseline for files greater than 100MB.

Cloud data storage↗

A Survey of Open Source Software Repositories in the U.S. Department of Energy’s National Laboratories

There are 17 national laboratory systems in the United States operating under the auspices of the U.S. Department of Energy (DOE). These government labs employ tens of thousands of people engaging in research software engineering activities across a variety of missions. To support this work, many open source projects are maintained. Further, many of these projects have broad utility to the computing community at large and domain scientists in a variety of fields. However, the complexity and decentralized nature of the laboratory system has resulted in a situation where no one entity even knows about all the open source software projects in this ecosystem, let alone crude metrics of their health. In this article, we do the first external inventory of open source software repositories with a nexus to DOE labs. We posit that a project’s need for sustainability support can be determined by comparing measures of active use to measures of active maintenance.

97 MATHEMATICS AND COMPUTING↗

Tectonic risk forecasting through expert elicitation for geological repositories: the TOPAZ project

This paper describes the development of a probabilistic methodology for the evaluation of tectonic hazards to geological repositories in Japan. The approach is a development of NUMO's ITM methodology, which produced probabilistic hazard maps for volcanism and rock deformation for periods up to about 100,000 years in a set of Case Studies that covered a large area of the country. To address potential regulatory requirements, the TOPAZ project has extended the ITM methodology to look into the period between 100,000 and 1 million years, where significant uncertainties begin to emerge about the tectonic framework within which quantitative forecasting can be made. Part of this methodology extension has been to adopt expert elicitation techniques to capture differing expert views as a means of addressing such uncertainties. This paper briefly outlines progress in this development work to date. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Impact of advanced fuel cycles on uncertainty associated with geologic repositories

This paper provides a qualitative evaluation of the impact of advanced fuel cycles, particularly partition and transmutation of actinides, on the uncertainty associated with geologic disposal. Based on the discussion, advanced fuel cycles, will not materially alter (1) the repository performance (2) the spread in dose results around the mean (3) the modeling effort to include significant features, events, and processes in the performance assessment, or (4) the characterization of uncertainty associated with a geologic disposal system in the regulatory environment of the United States. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Long-term monitoring experiences at the HADES underground lab and its relevance for radwaste repository monitoring

In the frame of its radwaste disposal research programme, SCK-CEN started the construction of the HADES underground research facility in 1980. Including several extensions and a comprehensive experimental programme, it has provided a lot of experience on monitoring. Monitoring is performed for many reasons: construction follow-up, field characterisation, investigation of phenomena, and model validations - in which the underground lab offers the opportunity for up-scaling conventional laboratory set-ups. Construction monitoring has allowed to develop and optimise the underground construction techniques in a previously poorly known environment, resulting in a well-mastered application of mechanised methods for gallery construction with minimal damage to the host formation. Access to this formation also allows its characterisation, both geotechnical, geological and geochemical, and the detailed investigation of phenomena such as fracturing and oxidation. Finally, instrumented set-ups allow to test various numerical models by comparing the observations with the predicted behaviour. The specific conditions of the underground laboratory put particular requirements to the sensors. These conditions include the long-term nature of many set-ups - typically several years to decades, the inaccessibility of many sensors after installation, high mechanical and water pressures, and corrosion. Combined with the fact that many sensors are custom made, obtaining and maintaining a fully functional instrumented set-up can be challenging. A lot of experience has therefore been gained which is very valuable when designing the monitoring of radwaste repositories - and it has allowed us to determine the critical success factors for monitoring. Engineers tend to look at this first from a technical viewpoint - and there are many technical aspects indeed that determine the reliability of monitoring. A first one is the combination of different observations ('redundancy') which can be implemented by the use of several sensors, different sensor principles, different (coupled) parameters, and the combination of point measurements with geophysical techniques. Cabling is also a critical issue as it is often considered as the primary enemy of barrier integrity. Minimal cabling techniques, such as distributed fibre optic monitoring and wireless signal transmission, therefore get increasing attention. Also the interpretation of the monitoring data - in particular those that are perceived as 'wrong' or 'unexpected', needs sufficient attention. The long-term experience has however also shown that the design of a monitoring programme must look beyond the technical part. In particular for long-term applications, issues such as data management and record keeping are vital to guarantee success in this. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Deeplynx Dag Repository

The DeepLynx DAG repository will contain several Airflow DAGs (Directed Acyclic Graphs) which will be used in the context of DeepLynx's deployed Apache Airflow instance. These DAGs will be used for multiple data management tasks for DeepLynx data, including but not limited to: - bringing data from various sources and tools into DeepLynx - managing sequential data workflows, such as running Python scripts on data to perform analysis and returning the results to DeepLynx - performing any necessary transformation or pre-processing on data coming into DeepLynx from external sources or out of DeepLynx to go to external applications

Brownlee, JarenM.↗

Cytrics Repository Of Analysis Tools And Engineering Resources

Cybersecurity Testing for Resilient Industrial Control Systems (CyTRICS) is a DOE-funded project that works with vendors to evaluate the cybersecurity of equipment used in US critical infrastructure. In the process of testing systems, CyTRICS researchers often develop custom tools. The tools in this repository were developed during multiple CyTRICS tests to assist with the testing process. They help solve problems encountered by CyTRICS researchers and address uncommon testing subjects for which limited tooling is available. They are useful to other researchers working on similar systems and architectures.

Laird, SutterE↗

KCuF3 KPZ data repository

Data repository for 'Detection of Kardar-Parisi-Zhang hydrodynamics in a quantum Heisenberg spin-1/2 chain'. Data taken on KCuF3 on SEQUOIA spectrometer at ORNL's SNS.

1D spin chain↗

ORNL/TM-2021/2046 Appendix data repository

Repository of data files used to generate plots for Post-Closure Nuclear Criticality Safety Evaluations for Disposition of Criticality Control Overpacks at the Waste Isolation Pilot Plant (ORNL/TM-2021/2046). See the readme for information contained in the individual files. See the report for description of the models used to generate the data.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Evaluation of Desiccation Behavior in Basalt Microfiber–Reinforced Bentonite Clay for Geological Repositories of Nuclear Spent Fuel Using Digital Image Correlation

ABSTRACT Secure storage of nuclear spent fuel (NSF) is of great concern for protecting public health and safety. The preferred long-term solution is underground containment in geological repositories, where one or more engineered barrier materials (EBM) encapsulate the NSF and separate it from the natural rock. Bentonite clay is commonly used as an EBM due to its many advantageous properties including low hydraulic conductivity, which ensures limitation of water infiltration to the system and the subsequent risk of corrosion in NSF canisters. However, bentonite clay subjected to heating from nuclear decay may form desiccation cracking. This study conducted disk-shaped free shrinkage tests and ring-shaped restrained shrinkage tests of bentonite clay samples reinforced with basalt microfibers. Digital image correlation was used as a noncontact full-field displacement measurement to track the time-evolving shrinkage and desiccation cracking phenomena and make quantified comparisons between plain bentonite and bentonite with varying contents of basalt microfibers (i.e., 0.0, 0.5, 1.0, and 1.5 % wt.). Results indicate that plain bentonite and basalt microfiber-reinforced samples showed similar free shrinkage behavior, while desiccation cracking behavior was significantly altered by adding basalt microfibers. Microfiber reinforcement effectively reduced major cracks through a “crack-bridging” effect while causing minor cracks to initiate earlier and at higher moisture contents than plain bentonite. Results infer that reinforcing plain bentonite with inorganic microfibers can potentially control desiccation cracking, leading to safer and improved nuclear waste management.

Materials Science↗

PubDAS: A PUBlic Distributed Acoustic Sensing Datasets Repository for Geosciences

During the past few years, distributed acoustic sensing (DAS) has become an invaluable tool for recording high-fidelity seismic wavefields with great spatiotemporal resolutions. However, the considerable amount of data generated during DAS experiments limits their distribution with the broader scientific community. Such a bottleneck inherently slows down the pursuit of new scientific discoveries in geosciences. Here, we introduce PubDAS—the first large-scale open-source repository where several DAS datasets from multiple experiments are publicly shared. PubDAS currently hosts eight datasets covering a variety of geological settings (e.g., urban centers, underground mines, and seafloor), spanning from several days to several years, offering both continuous and triggered active source recordings, and totaling up to ~90 TB of data. Here this article describes these datasets, their metadata, and how to access and download them. Some of these datasets have only been shallowly explored, leaving the door open for new discoveries in Earth sciences and beyond.

54 ENVIRONMENTAL SCIENCES↗

Repository near-field thermal modeling update including analysis of open mode design concepts

The FY11 disposal concepts report: Generic Repository Design Concepts and Thermal Analysis (FY11), recognized open and enclosed emplacement modes, and recommended further work to evaluate one or more open modes (Hardin et al. 2011, Section 6). Enclosed modes were defined to include disposal concepts that call for waste packages to be in direct contact with any surrounding solid medium such as buffer material, backfill, or host geology. For enclosed modes, the direct contact begins immediately at emplacement or shortly thereafter, with that contact influencing peak near-field temperature. Open modes maintain unsaturated, air filled open spaces around the waste packages for some time prior to permanent closure, and even after closure for some concepts.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Establishing MICHCARB, a geological carbon sequestration research and education center for Michigan, implemented through the Michigan Geological Repository for Research and Education, part of the Department of Geosciences at Western Michigan University

The Michigan Geological Repository for Research and Education (MGRRE), part of the Department of Geosciences at Western Michigan University (WMU) at Kalamazoo, Michigan, established MichCarb—a geological carbon sequestration resource center by: • Archiving and maintaining a current reference collection of carbon sequestration published literature • Developing statewide and site-specific digital research databases for Michigan’s deep geological formations relevant to CO2 storage, containment and potential for enhanced oil recovery • Producing maps and tables of physical properties as components of these databases • Compiling all information into a digital atlas • Conducting geologic and fluid flow modeling to address specific predictive uses of CO2 storage and enhanced oil recovery, including compiling data for geological and fluid flow models, formulating models, integrating data, and running the models; applying models to specific predictive uses of CO2 storage and enhanced oil recovery • Conducting technical research on CO2 sequestration and enhanced oil recovery through basic and applied research of characterizing Michigan oil and gas and saline reservoirs for CO2 storage potential volume, injectivity and containment. Based on our research, we have concluded that the Michigan Basin has excellent saline aquifer (residual entrapment) and CO2/Enhanced oil recovery related (CO2/EOR; buoyant entrapment) geological carbon sequestration potential with substantial, associated incremental oil production potential. These storage reservoirs possess at least satisfactory injectivity and reliable, permanent containment resulting from associated, thick, low permeability confining layers. Saline aquifer storage resource estimates in the two major residual entrapment, reservoir target zones (Lower Paleozoic Sandstone and Middle Paleozoic carbonate and sandstone reservoirs) are in excess of 70-80 Gmt (at an overall 10% storage efficiency factor; an approximately P50 probability range for all formations using DOE-NETL, 2010, storage resource estimation methodology). Incremental oil production resulting from successful implementation of CO2/EOR for the highest potential Middle Paleozoic reef reservoirs (Silurian, Northern Niagaran Reef trend) in Michigan is estimated at 130 to over 200 MMBO (22-33 Mm3). In addition, between 200 and 400 Mmt of CO2 could be sequestered in the course of successful deployment of CO2/EOR in the northern reef trend’s largest depleted (primary production) oil fields (those that have produced in excess of 500,000 BO; 80,000 m3of oil). • Effecting technology transfer to members of industry and governmental agencies by establishing an Internet Website at which all data, reports and results are accessible; publishing results in relevant journals; conducting technology transfer workshops as part of our role as the Michigan Center of the Petroleum Technology Transfer Council or any successor organization.

58 GEOSCIENCES↗