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DAISY Benchmark Performance Data

This repository contains the underlying data from benchmark experiments for Drifting Acoustic Instrumentation SYstems (DAISYs) in waves and currents described in "Performance of a Drifting Acoustic Instrumentation SYstem (DAISY) for Characterizing Radiated Noise from Marine Energy Converters" (https://link.springer.com/article/10.1007/s40722-024-00358-6). DAISYs consist of a surface expression connected to a hydrophone recording package by a tether. Both elements are instrumented to provide metadata (e.g., position, orientation, and depth). Information about how to build DAISYs is available at https://www.pmec.us/research-projects/daisy. The repository's primary content is three compressed archives (.zip format), each containing multiple MATLAB binary data files (.mat format). A table relating individual data files to figures in the paper, as well as the structure of each file, is included in the repository as a Word document (Data Description MHK-DR.docx). Most of the files contain time series information for a single DAISY deployment (file naming convention: [site]_DAISY_[Drift #].mat) consisting of processed hydrophone data and associated metadata. For a limited number of DAISY deployments, the hydrophone package was replaced with an acoustic Doppler velocimeter (file naming convention: [site]_DAISY_[Drift #]_ADV.mat). Data were collected over several years at three locations: (1) Sequim Bay at Pacific Northwest National Laboratory's Marine & Coastal Research Laboratory (MCRL) in Sequim, WA, the energetic tidal channel in Admiralty Inlet, WA (Admiralty Inlet), and the U.S. Navy's Wave Energy Test Site (WETS) in Kaneohe, HI. Brief descriptions of data files at each location follow. - MCRL - (1) Drift #4 and #16 contrast the performance of a DAISY and a reference hydrophone (icListen HF Reson), respectively, in the quiescent interior of Sequim Bay (September 2020). (2) Drift #152 and #153 are velocity measurements for a drifting acoustic Doppler velocimeter in in the tidally-energetic entrance channel inside a flow shield and exposed to the flow, respectively (January 2018). (3) Two non-standard files are also included: DAISY_data.mat corresponds to a subset of a DAISY drift over an Adaptable Monitoring Package (AMP) and AMP_data.mat corresponds to approximately co-temporal data for a stationary hydrophone on the AMP (February 2019). - Admiralty Inlet - (1) Drift #1-12 correspond to tests with flow shielded DAISYs, unshielded DAISYs, a reference hydrophone, and drifting acoustic Doppler velocimeter with 5, 10, and 15 m tether lengths between surface expression and hydrophone recording package (July 2022). (2) Drift #13-20 correspond to tests of flow shielded DAISYs with three different tether materials (rubber cord, nylon line, and faired nylon line) in lengths of 5, 10, and 15 m (July 2022). - WETS - (1) Drift #30-32 correspond to tests with a heave plate incorporated into the tether (standard configuration for wave sites), rubber cord only, and rubber cord, but with a flow shielded hydrophone (November 2022). (2) Drift #49-58 and Drift #65-68 correspond to measurements around mooring infrastructure at the 60 m berth where time-delay-of-arrival localization was demonstrated for different DAISY arrangements and hydrophone depths (November 2022).

16 TIDAL AND WAVE POWER↗

Drifting Acoustic Measurements around C-Power's SeaRay WEC

The repository contains underwater noise measurements and associated metadata collected around C-Power's SeaRay wave energy converter on July 15, 2024 and July 16, 2024 while it was deployed at the U.S. Navy's Wave Energy Test Site (WETS) in Kaneohe, HI. Measurements were obtained using Drifting Acoustic Instrumentation SYstems (DAISYs). DAISYs consist of a surface expression connected to a hydrophone recording package by a tether. Both elements are instrumented to provide metadata (e.g., position, orientation, and depth). Information about how to build DAISYs is available at https://www.pmec.us/research-projects/daisy. The repository's primary content is a compressed archive (.zip format), containing multiple MATLAB binary data files (.mat format). The structure of each file is included in the repository as a Word document (Data Description MHK-DR.docx). Each file contains time series information for a single DAISY deployment (file naming convention: WETS_DAISY_[Drift #].mat) consisting of processed hydrophone data and associated metadata. During these measurements, C-Power's SeaRay was located at approximately 21.48112 N, 157.74451 W.

16 TIDAL AND WAVE POWER↗

TEAMER: Twin Ocean Power Wave Energy Converter Comprehensive Overview

These files collectively provide a comprehensive overview of the testing process, data analysis, and validation for the Twin Ocean Power device tested at the O.H. Hinsdale Wave Research Laboratory, supported by TEAMER funding. This resource includes an overview of power results for a series of 7 trials. The files included in this comprehensive overview include a comprehensive log sheet for each trial, a summary of all trials, and processing scripts for the raw data. It includes all raw data in .tsv and MATLAB compatible formats, an average power chart, angular velocity charts for each trial, trial metrics, and power output files. This resource includes images of the Twin Ocean Power Wave Energy Converter device components and movement during testing and video recordings of each trial.

16 TIDAL AND WAVE POWER↗

1D Heat Loss Models Validation Experiment

Contains data from the model validation in the 1D Heat Loss Models to Predict the Aquifer Temperature Profile during Hot/Cold Water Injection Project. The data include two COMSOL models (2D axisymmetric benchmark model and 2D Vinsome model), one python code (1D Vinsome based FEM numerical simulation), one matlab main code (1D Newton analytical solution and all results comparison visualization), and output files generated from the above models.

1D↗

MOFA: Multi-objective Flux Analysis for the COBRA Toolbox

Environments of biological organisms are frequently nutrient and energy limited. This necessitates that systems exert tight regulation of trade-offs among key biological processes. Quantitative knowledge of these tradeoffs is essential for successful manipulation of biosystems (e.g., metabolic engineering projects). Using genome-scale constraint-based models of metabolism (GSMs), Multi-Objective Flux Analysis (MOFA) allows analyses of trade-offs among a system’s key biological tasks. The leading software for conducting a variety of constraint-based analyses using GSMs is the COBRA Toolbox for MATLAB. Results: We have developed a new add-on tool for COBRA that performs MOFA for a number of objectives only limited by computation power.

59 BASIC BIOLOGICAL SCIENCES↗

Study on the Tritium Behaviors in the VHTR System. Part 1: Development of Tritium Analysis Code for VHTR and Verification

A tritium permeation analyses code (TPAC) has been developed in Idaho National Laboratory (INL) by using MATLAB SIMULINK package for analysis of tritium behaviors in the VHTRs integrated with hydrogen production and process heat application systems. The modeling is based on the mass balance of tritium containing species and hydrogen (i.e., HT, H2, HTO, HTSO4, and TI) coupled with a variety of tritium source, sink, and permeation models. The code includes (1) tritium sources from ternary fission and neutron reactions with 6Li, 7Li 10B, 3He, (2) tritium purification system, (3) leakage of tritium with coolant, (4) permeation through pipes, vessels, and heat exchangers, (4) electrolyzer for high temperature steam electrolysis (HTSE), and (5) isotope exchange for SI process. Verification of the code has been performed by comparisons with the analytical solutions, the experimental data, and the benchmark code results based on the Peach Bottom reactor design. The results showed that all the governing equations are well implemented into the code and correctly solved. This paper summarizes all the background, the theory, the code structures, and some verification results related to the TPAC code development in Idaho National Laboratory (INL).

42 ENGINEERING↗

Mechanism of formation of wiggly compaction bands in porous sandstone: 2. Numerical simulation using discrete element method

Wiggly compaction bands in porous aeolian s andstone vary from chevron shape to wavy shape to nearly straight. In some outcrops these variations occur along a single band. Here, a bonded close-packed discrete element model is used to investigate what mechanical properties control the formation of wiggly compaction bands (CBs). To simulate the volumetric yielding failure of porous sandstone, a discrete element shrinks when the force state of one of its bonds reaches the yielding cap defined by the failure force and the aspect ratio (k) of the yielding ellipse. A Matlab code “MatDEM 3D ” has been developed on the basis of this enhanced discrete element method. Mechanical parameters of elements are chosen according to the elastic properties and the strengths of porous sandstone. In numerical simulations, the failure angle between the band segment and maximum principle stress decreases from 90° to approximately 45° as k increases from 0.5 to 2, and compaction bands vary from straight to chevron shape. With increasing strain, subsequent compaction occurs inside or beside compacted elements, which leads to further compaction and thickening of bands. The simulations indicate that a greater yielding stress promotes chevron CBs, and a greater cement strength promotes straight CBs. Combined with the microscopic analysis introduced in the companion paper, we conclude that the shape of wiggly CBs is controlled by the mechanical properties of sandstone, including the aspect ratio of the yielding ellipse, the cri tical yielding stress, and the cement strength, w hich are d etermined primarily by petrophysical attributes, e.g., grain sorting, porosity, and cementation.

58 GEOSCIENCES↗

Kraft black liquor concentration with graphene oxide membranes: Process simulations and technoeconomic analysis

Abstract Black liquor (BL) dewatering by multi‐effect evaporation in the kraft papermaking process is highly energy‐intensive. It was previously shown that graphene oxide (GO) nanofiltration membranes can remove lignin, other organics, and inorganic salts from BL while exhibiting stability in caustic BL conditions. Here, we design and simulate several candidate dewatering processes and evaluate their technoeconomic characteristics. All processes concentrate BL from 15 to 30 wt% solutes while producing aqueous permeate. Two process options were analyzed—option A including “last‐mile” permeate treatment to reduce solutes to 0.2 wt%, and option B excluding this treatment and producing a 3–4 wt% solutes stream. These processes were simulated in custom‐built ASPEN Plus flowsheets interfaced with Microsoft Excel and MATLAB. All processes deliver large (>40%) energy savings. Detailed technoeconomic analysis showed that option A processes are profitable in mills equipped with condensing turbines, but unprofitable with only purchased fuel savings. Option B processes are profitable in both situations, but require the caustic permeate to be utilized in other kraft process units. They are also profitable with electricity generation when operated at smaller scales matching the requirements of other process units. Monte‐Carlo sensitivity analysis shows that Option A can yield median 20‐year NPVs up to ~$10MM and Option B up to ~$25MM. Overall, GO membrane‐based BL dewatering is economically promising, assuming successful slipstream piloting and scale‐up campaigns. It would have immediate sustainability benefits from large energy savings, and broader implications for biorefinery processes due to the ability to fractionate biomass feedstock components under harsh conditions.

Wang, Zhongzhen↗

Non‐invasive imaging of cellulose microfibril orientation within plant cell walls by polarized Raman microspectroscopy

ABSTRACT Cellulose microfibrils represent the major scaffold of plant cell walls. Different packing and orientation of the microfibrils at the microscopic scale determines the macroscopic properties of cell walls and thus affect their functions with a profound effect on plant survival. We developed a polarized Raman microspectroscopic method to determine cellulose microfibril orientation within rice plant cell walls. Employing an array of point measurements as well as area imaging and subsequent Matlab‐assisted data processing, we were able to characterize the distribution of cellulose microfibril orientation in terms of director angle and anisotropy magnitude. Using this approach we detected differences between wild type rice plants and the rice brittle culm mutant, which shows a more disordered cellulose microfibril arrangement, and differences between different tissues of a wild type rice plant. This novel non‐invasive Raman imaging approach allows for quantitative assessment of cellulose fiber orientation in cell walls of herbaceous plants, an important advancement in cell wall characterization. Biotechnol. Bioeng. 2016;113: 82–90. © 2015 Wiley Periodicals, Inc.

Sun, Lan↗

Open‐Source Anaerobic Digestion Modeling Platform, Anaerobic Digestion Model No. 1 Fast (ADM1F)

An open‐source modeling platform, called Anaerobic Digestion Model No. 1 Fast (ADM1F), is introduced to achieve fast and numerically stable simulations of anaerobic digestion processes. ADM1F is compatible with an iPython interface to facilitate model configuration, simulation, data analysis, and visualization. Faster simulations and more stable results are accomplished by implementing an advanced open‐source library of numerical methods called Portable Extensive Toolkit for Scientific Computation (PETSc) to solve the ADM1 system of equations. Leveraging PETSc, ADM1F can consistently complete a steady‐state simulation under 0.2 s, over 99% faster than a benchmark ADM1 model implemented with MATLAB while achieving agreement of model outputs within 1% of those obtained with the benchmark model. For dynamic simulations, however, ADM1F has a computational speed advantage only when the influent characteristics update more frequently than every 4 h. The ability of ADM1F to be useful as a tool to study anaerobic digestion systems is demonstrated through two example implementations of ADM1F: (1) a two‐phase co‐digestion scenario evaluating the impact of the organic loading rate and the substrate composition on reactor performance and stability, and (2) a conventional digester scenario assessing the effectiveness of recovery strategies after disruptions that led to instability. These examples demonstrate how the high simulation speed and the convenience of the iPython interface allow ADM1F to complete complex analyses within minutes, much faster than computational strategies currently reported in the literature.

anaerobic co-digestion↗

Recursive integral method with Cayley transformation

Summary The recently developed RIM (recursive integral method) finds eigenvalues in a region of the complex plane. It computes an indicator to test if the region contains eigenvalues using an approximate spectral projection. If the indicator shows that the region contains eigenvalues, it is subdivided into smaller regions, which are then recursively tested and subdivided until any eigenvalues are isolated to a specified precision. We propose an enhancement to RIM that uses Cayley transformations and Arnoldi's method to greatly decrease the number of factorizations required to solve the linear systems that arise from a discretized contour integral to compute the indicator, which substantially reduces the computational cost. We demonstrate the efficacy of our method with numerical examples and compare with the implicitly restarted Arnoldi method, as implemented in eigs in MATLAB.

Huang, R.↗

CP decomposition for tensors via alternating least squares with QR decomposition

The CP tensor decomposition is used in applications such as machine learning and signal processing to discover latent low-rank structure in multidimensional data. Computing a CP decomposition via an alternating least squares (ALS) method reduces the problem to several linear least squares problems. The standard way to solve these linear least squares subproblems is to use the normal equations, which inherit special tensor structure that can be exploited for computational efficiency. However, the normal equations are sensitive to numerical ill-conditioning, which can compromise the results of the decomposition. In this paper, we develop versions of the CP-ALS algorithm using the QR decomposition and the singular value decomposition, which are more numerically stable than the normal equations, to solve the linear least squares problems. Our algorithms utilize the tensor structure of the CP-ALS subproblems efficiently, have the same complexity as the standard CP-ALS algorithm when the input is dense and the rank is small, and are shown via examples to produce more stable results when ill-conditioning is present. Our MATLAB implementation achieves the same running time as the standard algorithm for small ranks, and we show that the new methods can obtain lower approximation error.

97 MATHEMATICS AND COMPUTING↗

Protection Scheme for Multiterminal HVDC System Based on Wavelet Transform Modulus Maxima

Fault protection is a major issue in the development of multiterminal high‐voltage direct current (HVDC) system based on voltage‐source converter. Owing to the rapid increase in fault current under DC faults, protection requires a fast fault detection method to isolate the fault current. However, the selectivity and reliability of the fast protection scheme should be primarily guaranteed. Therefore, a new protection strategy based on modulus maximum under wavelet transform is proposed in this paper. Fault detection and discrimination are achieved using single‐end signals of fault current. The external and internal faults can be discriminated via local information. The reliability and robustness of the proposed scheme against potential factors are verified. Numerous simulation cases are performed in PSCAD/EMTDC under different fault scenarios, and signal data are analyzed in MATLAB to demonstrate the effectiveness of the proposed fault protection scheme. © 2020 Institute of Electrical Engineers of Japan. Published by Wiley Periodicals LLC.

Huai, Qing↗

Dynamic Characteristic Identification

This paper introduces a dynamic system parameter extraction using experimental data and a known characteristic equation for a single degree of freedom system. The efficacy of curve fitting to determine mass, damping, and stiffness for simulated underdamped, critically damped, and overdamped systems is explored. Two methods are explored to obtain these characteristics using a step response approach in the time domain or a transfer function and dynamic stiffness approach in the frequency domain for simulated systems. Commonly available software, MATLAB, is used for curve fitting. An examination of the effect of inaccurate seeds, or starting values, for mass, damping, and stiffness is included.

Jordan, Clay↗

Deflection Shape Balancing: An Alternative to Modal Balancing

Rotor balancing is the final step in the rotor manufacturing process and may be necessary during rotor refurbishment. The process can be time consuming and costly, especially for supercritical monolithic rotors, impacting schedule and increasing costs. Modal balancing is a commonly used practice and is effective but requires multiple runs and at least one high-speed run. Deflection shape balancing is introduced as an alternative that may offer a more efficient method of balancing making the process faster with potentially fewer balancing runs. This paper explores the performance of the deflection shape fit balancing technique by utilizing MATLAB code simulations.

Morrell, William Jason↗

AHF: Array-Based Half-Facet Data Structure for Mixed-Dimensional and Non-Manifold Meshes

We present an Array-based Half-Facet mesh data structure, or AHF, for efficient mesh query and modification operations. The AHF extends the compact array-based half-edge and half-face data structures (T.J. Alumbaugh and X. Jiao, Compact array-based mesh data structures, IMR, 2005) to support mixed-dimensional and non-manifold meshes. The design goals of our data structure include generality to support such meshes, efficiency of neighborhood queries and mesh modification, compactness of memory footprint, and facilitation of interoperability of mesh-based application codes. To accomplish these goals, our data structure uses sibling half-facets as a core abstraction, coupled with other explicit and implicit representations of entities. A unique feature of our data structure is a comprehensive implementation in MATLAB, which allows rapid prototyping, debugging, testing, and deployment of meshing algorithms and other mesh-based numerical methods. We have also developed C++ implementation built on top of MOAB (T.J. Tautges, R. Meyers, and K. Merkley, MOAB: A Mesh-Oriented Database, Sandia National Laboratories, 2004). We present some comparisons of the memory requirements and computational costs, and also demonstrate its effectiveness with a few sample applications.

Dyedov, Volodymyr↗