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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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Structure of the FANCI-FANCD2 Complex: Insights into the Fanconi Anemia DNA Repair Pathway
Fanconi anemia is a cancer predisposition syndrome caused by defects in the repair of DNA interstrand cross-links (ICLs). Central to this pathway is the Fanconi anemia I-Fanconi anemia D2 (FANCI-FANCD2) (ID) complex, which is activated by DNA damage-induced phosphorylation and monoubiquitination. The 3.4 angstrom crystal structure of the {approx}300 kilodalton ID complex reveals that monoubiquitination and regulatory phosphorylation sites map to the I-D interface, suggesting that they occur on monomeric proteins or an opened-up complex and that they may serve to stabilize I-D heterodimerization. The 7.8 angstrom electron-density map of FANCI-DNA crystals and in vitro data show that each protein has binding sites for both single- and double-stranded DNA, suggesting that the ID complex recognizes DNA structures that result from the encounter of replication forks with an ICL.
Insights into Substrate Specificity of NlpC/P60 Cell Wall Hydrolases Containing Bacterial SH3 Domains
ABSTRACT Bacterial SH3 (SH3b) domains are commonly fused with papain-like Nlp/P60 cell wall hydrolase domains. To understand how the modular architecture of SH3b and NlpC/P60 affects the activity of the catalytic domain, three putative NlpC/P60 cell wall hydrolases were biochemically and structurally characterized. These enzymes all have γ- d -Glu-A 2 pm (A 2 pm is diaminopimelic acid) cysteine amidase (or dl -endopeptidase) activities but with different substrate specificities. One enzyme is a cell wall lysin that cleaves peptidoglycan (PG), while the other two are cell wall recycling enzymes that only cleave stem peptides with an N-terminal l -Ala. Their crystal structures revealed a highly conserved structure consisting of two SH3b domains and a C-terminal NlpC/P60 catalytic domain, despite very low sequence identity. Interestingly, loops from the first SH3b domain dock into the ends of the active site groove of the catalytic domain, remodel the substrate binding site, and modulate substrate specificity. Two amino acid differences at the domain interface alter the substrate binding specificity in favor of stem peptides in recycling enzymes, whereas the SH3b domain may extend the peptidoglycan binding surface in the cell wall lysins. Remarkably, the cell wall lysin can be converted into a recycling enzyme with a single mutation. IMPORTANCE Peptidoglycan is a meshlike polymer that envelops the bacterial plasma membrane and bestows structural integrity. Cell wall lysins and recycling enzymes are part of a set of lytic enzymes that target covalent bonds connecting the amino acid and amino sugar building blocks of the PG network. These hydrolases are involved in processes such as cell growth and division, autolysis, invasion, and PG turnover and recycling. To avoid cleavage of unintended substrates, these enzymes have very selective substrate specificities. Our biochemical and structural analysis of three modular NlpC/P60 hydrolases, one lysin, and two recycling enzymes, show that they may have evolved from a common molecular architecture, where the substrate preference is modulated by local changes. These results also suggest that new pathways for recycling PG turnover products, such as tracheal cytotoxin, may have evolved in bacteria in the human gut microbiome that involve NlpC/P60 cell wall hydrolases.
Geology and in situ stress of the MH-2 borehole, Idaho, USA: Insights into western Snake River Plain structure from geothermal exploration drilling
Project HOTSPOT, the Snake River Scientific Drilling Project (International Continental Scientific Drilling Program), tested for deep geothermal resources and examined the petrology of volcanic rocks with three drillholes in the central and western Snake River Plain (western USA). The MH-2 drillhole targeted fractured crystalline and hydrothermally altered basalt in the area of the Mountain Home Air Force Base (Idaho) to a total depth of 1821 m. At 1745 m depth the drillhole encountered flowing artesian hydrothermal fluids of at least 150 °C. We integrate geological analyses of core, image log, and borehole geophysical data, and in situ stress analyses to describe the structural environment that produces permeability for artesian flow. The rocks in the lower 540 m of the drillhole consist of basalt flows as much as 30 m thick, altered basalt, and thin sedimentary horizons. The mechanical stratigraphy is defined by nine mechanical horizons that are in three ranges of rock strength on the basis of experimentally determined strength data, core logging, and geophysical log signatures. Hydrothermal alteration products and mineralization in the core are associated with three highly faulted sections; the lowermost section is associated with the zone of flowing thermal water. Shear slip indicators on faults observed in core indicate slip ranging from pure strike slip to normal failure mechanisms in the stronger horizons. The borehole breakouts indicate that the maximum horizontal stress, SH, is oriented 047° ± 7°, and drilling-induced tensile fractures indicate that SH is oriented at 67° ± 21°. The in situ stress orientations exhibit little variation over the depth of the measured interval, but the SH magnitude varies with depth, and is best explained by an oblique normal fault stress regime. The geomechanical model indicates that if pore pressures at depth are elevated above the normal hydrostatic gradient, as observed here, the system has the potential to deform by mixed normal and strike-slip failure. Our observations and interpretations suggest that the MH-2 borehole was drilled into oblique normal faults that intersect a buried 300°-trending fault block masked by the basaltic volcanic complex. These data indicate that the transition from the central to western Snake River Plain is characterized by complex structures developed in response to a transitional stress state related to Snake River Plain and western Basin and Range stress regimes. Furthermore, the western Basin and Range stress and tectonic regime may extend from northern Nevada into western Idaho and may enhance the potential for geothermal resources by creating interconnected fracture and fault-related permeability at depth.
Rate Dependent Multi-Mechanism Discharge of Ag 0.50 VOP 4 ·1.8H 2 O: Insights from In Situ Energy Dispersive X-ray Diffraction
Ag 0.50 VOPO 4 ·1.8H 2 O (silver vanadium phosphate, SVOP) demonstrates a counterintuitive higher initial loaded voltage under higher discharge current. Energy dispersive X-ray diffraction (EDXRD) from synchrotron radiation was used to create tomographic profiles of cathodes at various depths of discharge for two discharge rates. SVOP displays two reduction mechanisms, reduction of a vanadium center accompanied by lithiation of the structure, or reduction-displacement of a silver cation to form silver metal. In-situ EDXRD provides the opportunity to observe spatially resolved changes to the parent SVOP crystal and formation of Ag 0 during reduction. At a C/170 discharge rate V 5+ reduction is the preferred initial reaction resulting in higher initial loaded voltage. At a discharge rate of C/400 reduction of Ag + with formation of conductive Ag 0 occurs earlier during discharge. Discharge rate also affects the spatial location of reduction products. The faster discharge rate initiates reduction close to the current collector with non-uniform distribution of silver metal resulting in isolated cathode areas. The slower rate develops a more homogenous distribution of reduced SVOP and silver metal. This study illuminates the roles of electronic and ionic conductivity limitations within a cathode at the mesoscale and how they impact the course of reduction processes and loaded voltage.
Phylogenetic analysis of pectin-related gene families in Physcomitrella patens and nine other plant species yields evolutionary insights into cell walls
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Insights into the respiratory tract microbiota of patients with cystic fibrosis during early Pseudomonas aeruginosa colonization
Abstract Pseudomonas aeruginosa plays a major role in cystic fibrosis (CF) progression. Therefore, it is important to understand the initial steps of P. aeruginosa infection. The structure and dynamics of CF respiratory tract microbial communities during the early stages of P. aeruginosa colonization were characterized by pyrosequencing and cloning-sequencing. The respiratory microbiota showed high diversity, related to the young age of the CF cohort (mean age 10 years). Wide inter- and intra-individual variations were revealed. A common core microbiota of 5 phyla and 13 predominant genera was found, the majority of which were obligate anaerobes. A few genera were significantly more prevalent in patients never infected by P. aeruginosa. Persistence of an anaerobic core microbiota regardless of P. aeruginosa status suggests a major role of certain anaerobes in the pathophysiology of lung infections in CF. Some genera may be potential biomarkers of pulmonary infection state.
Dataset for Leveraging CryoEM and AI-Driven Morphological Feature Analysis for Insights on Bacterial Structures
This repository hosts an AI-assisted image segmentation and analysis pipeline for Pantoea sp. YR343 cryo-electron microscopy (cryoEM) datasets. The workflow automates membrane thickness measurements, flagella detection, and field-of-view (FOV) screening from low-dose, high-resolution cryoEM micrographs eliminating the need for slow manual annotation. By integrating deep-learning based segmentation (YOLOv11) with quantitative post-processing, this toolkit provides a scalable and reproducible way to study bacterial morphology under hydrated, near-native conditions. The GitHub repository for AI-based tools for cryoEM bacteria ultrastructures can be found here: https://github.com/Sireesiru/Cryo-EM-Ultrastructures/tree/main
Quantitative insights into the dislocation source behavior of twin boundaries suggest a new dislocation source mechanism
Pop-in statistics from nanoindentation with spherical indenters are used to determine the stress required to activate dislocation sources in twin boundaries (TBs) in copper and its alloys. The TB source activation stress is smaller than that needed for bulk single crystals, irrespective of the indenter size, dislocation density and stacking fault energy. Because an array of pre-existing Frank partial dislocations is present at a TB, we propose that dislocation emission from the TB occurs by the Frank partials splitting into Shockley partials moving along the TB plane and perfect lattice dislocations, both of which are mobile. The proposed mechanism is supported by recent high resolution transmission electron microscopy images in deformed nanotwinned (NT) metals and may help to explain some of the superior properties of nanotwinned metals (e.g. high strength and good ductility), as well as the process of detwinning by the collective formation and motion of Shockley partial dislocations along TBs.
R&D Insights for Extreme Fast Charging of Medium- and Heavy-Duty Vehicles: Insights from the NREL Commercial Vehicles and Extreme Fast Charging Research Needs Workshop, August 27-28, 2019
As battery costs have declined and battery performance has improved, the applicability of vehicle electrification has expanded beyond passenger cars to the commercial vehicle sector. However, due to the larger batteries that would be needed for the medium- and heavy-duty (MDHD) sector, the electric charging capabilities to serve these larger commercial vehicles will need to be substantially more powerful than light-duty chargers. More specifically, such 'extreme fast charging' (XFC) will likely need to reach the megawatt scale to provide a full charge in less than 30 minutes in some applications. In addition, the combined cost of electrified vehicles and charging must be competitive with the costs of petroleum-based technologies and other alternatives to encourage widespread adoption of battery electric vehicles (BEVs) among MDHD fleets. Most of these fleets have a commercial mission and demand low total cost of ownership (TCO) (which motivates minimal refueling times) and high performance from their vehicles.
VOID INSIGHT: Venturing Obscure Information Depths: Insight Navigation via Spatial Investigation of Generative & Hyperdimensional Topologies
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Post-Catalytic Complexes with Emtricitabine or Stavudine and HIV-1 Reverse Transcriptase Reveal New Mechanistic Insights for Nucleotide Incorporation and Drug Resistance
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The Green Ocean: Precipitation Insights from the GoAmazon2014/5 experiment
This study summarizes the precipitation properties collected during the GoAmazon2014/5 campaign near Manaus in central Amazonia, Brazil. Precipitation breakdowns, summary radar rainfall relationships and self-consistency concepts from a coupled disdrometer and radar wind profiler measurements are presented. The properties of Amazon cumulus and associated stratiform precipitation are discussed, including segregations according to seasonal (Wet/Dry regime) variability, 5 cloud echo-top height and possible aerosol influences on the apparent oceanic characteristics of the precipitation drop size distributions. Overall, we observe that the Amazon precipitation straddles behaviors found during previous U.S. Department of Energy Atmospheric Radiation Measurements program (ARM) tropical deployments, with distributions favoring higher concentrations of smaller drops than ARM continental examples. Oceanic type precipitation characteristics are predominantly observed during the Amazon Wet seasons. An exploration of the controls on Wet season precipitation properties reveals that 10 wind direction, as compared with other standard radiosonde thermodynamic parameters or aerosol count/regime classifications performed at the ARM site, provides a good indicator for those Wet season Amazon events having an oceanic character for their precipitation drop size distributions.
InSight – Robotics Instrument Deployment System Surface Operations for the InSight Mars Lander
No abstract provided
National CMM Insights Platform
The National CMM Insights Platform is an interactive application. The tool showcases the U.S. National CMM Insights Dataset. It is intended to be used for research and comparison purposes, see full disclaimer and credits. Description: The National CMM Insights Platform is an interactive tool. The tool showcases the National CMM Insight Dataset. Application link: https://arcgis.netl.doe.gov/portal/apps/experiencebuilder/experience/?id=745ba8726d894a7f86c5d1859116c009 For additional information, please check out the StoryMap documentation: National CMM Insights Platform Guide The National CMM Insights Platform and Dataset provides access to aggregated publicly available information pertaining to census tracts, counties and states.
Seismic constraints from a Mars impact experiment using InSight and Perseverance
NASA’s InSight (Interior Exploration using Seismic Investigations, Geodesy and Heat Transport) mission has operated a sophisticated suite of seismology and geophysics instruments on the surface of Mars since its arrival in 2018. On 18 February 2021, we attempted to detect the seismic and acoustic waves produced by the entry, descent and landing of the Perseverance rover using the sensors onboard the InSight lander. Similar observations have been made on Earth using data from both crewed and uncrewed spacecraft, and on the Moon during the Apollo era, but never before on Mars or another planet. This was the only seismic event to occur on Mars since InSight began operations that had an a priori known and independently constrained timing and location. It therefore had the potential to be used as a calibration for other marsquakes recorded by InSight. Here we report that no signal from Perseverance’s entry, descent and landing is identifiable in the InSight data. Nonetheless, measurements made during the landing window enable us to place constraints on the distance–amplitude relationships used to predict the amplitude of seismic waves produced by planetary impacts and place in situ constraints on Martian impact seismic efficiency (the fraction of the impactor kinetic energy converted into seismic energy).