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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 271 records · Page 15
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Evaluations of the Fates of Alkali Metals, Actinides, Mercury, and Iodine During DWPF Recycle Diversion

The fates of alkali metals, actinides, mercury, and iodine in the Defense Waste Processing Facility Recycle Diversion process (as currently conceptualized) have been evaluated through paper studies based on available knowledge of the chemistry, physical properties, solubility, and volatility of the various species involved. The effect of pH in the range from 9 to 13 has been discussed. Recommendations for additional studies to close technology gaps have been provided, many of which are contingent upon the results of pending testing and sample characterization efforts. There is uncertainty in the amounts of soluble actinides passing through the process filter, though the bulk of the actinides should be captured on the filter with the Recycle Collection Tank solids and the total amounts of actinides should be relatively low. The Recycle Collection Tank pH could impact the fraction of actinides reaching the evaporator, but the primary factors determining the actinide fate are expected to be the amount of CO 2 sorption from air sparging or, for certain actinides (such as plutonium), oxidation and/or sorption to MnO 2 solids from permanganate additions to destroy the glycolate anion. Process optimization could minimize the amounts of actinides passing the filter. Depending upon the levels of mercury observed in recycle stream samples and because of the volatility of mercury, the evaporator should be designed with the capability to remove dense mercury phases from the condensate to avoid exceeding ETP WAC limits. The facility design must be adequate to transfer dense mercury phases and testing to confirm mercury transfer is needed. Simulant containing mercury is recommended for both filtration and evaporation testing. OLI Modeling of the various recycle streams is recommended to provide insight on the fate of iodine. Iodine-spiked simulants are recommended for upcoming evaporation tests. The pro) ect should consider the likelihood and impact of NAS scale formation in the evaporators. Process optimization may be needed to minimize the accumulation of NAS scale and possibly the sorption of actinides in the evaporator. Actual waste testing of the Recycle Diversion filtration and evaporation should include the analysis of actinides, mercury, and iodine to determine their partitioning.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2022

Better Buildings Workforce Accelerator – Technical Assistance Project: Northwest Energy Efficiency Council – A Replicable Analysis for Building Operator Certification Diversity, Equity, and Inclusion Objectives

The Northwest Energy Efficiency Council (NEEC) requested technical assistance through the U.S. Department of Energy (DOE) Better Buildings Workforce Accelerator (BBWA) program, with the objective of developing a replicable analytical approach to understanding Building Operator Certification (BOC) program participants and measure progress towards diversity, equity, and inclusion objectives. The technical assistance advances NEEC’s progress towards their goal of recruiting more diverse students to the BOC training and certification program. This report develops a replicable geospatial analysis of BOC program participants based on DEI indicators that can be applied at a national level, provides a step-by-step guide on repeating and updating the analysis, and presents recommendations for future data collection and analysis.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗
DOE OSTI2024

Enhancing Lifetime and Reducing Costs for Fish Diversion Netting Structures (Final Report)

In this effort Pacific Northwest National Laboratory (PNNL) developed and demonstrated an anti-fouling coating that is effective on fish diversion structures. The coating was based on a previously developed superhydrophobic lubricant infused composite (SLIC) coating but modified for application to flexible substrates. We showed that the new reformulated coating – FlexiSLIC – can be applied to flexible fibrous structures to significantly reduce biofouling of netting and anchor lines, to enable longer operational lifetimes, reduced costs, and more reliable operations. The coating developed in this effort was tested on relevant fish diversion structural netting and rope materials (e.g. nylon, Dyneema, polypropylene) to reduce biofouling. Engagement with industry in the development and demonstration further supported progress toward commercialization of the materials.

36 MATERIALS SCIENCE↗
DOE OSTI2026

Research Traineeship for Diversity in Nuclear Physics at Yale Wright Laboratory

This report pertains to the grant titled “Research Traineeship for Diversity in Nuclear Physics at Yale Wright Laboratory.” The award aimed to train and retain a diverse group of future scientists, including underrepresented, first-generation, and low-income undergraduates, as prospective nuclear physicists and leaders in science.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2021

Tree Diversity, Site Index, and Carbon Storage Decrease With Aridity in Douglas-Fir Forests in Western Canada

Forests are important for biodiversity, timber production and carbon accumulation, but these ecosystem services may be impacted by climate change. Field data collected from individual forest types occurring across a climatic gradient can contribute to forecasting these consequences. We examined how changes in temperature, precipitation and aridity affect ecosystem services in 23 mature Douglas-fir (Pseudotsuga menziesii) forests in nine climatic regions across a 900 km gradient in British Columbia, Canada. Using Canadian National Forest Inventory methodology, we assessed richness and diversity of plant functional groups, site index, and above- and below-ground carbon stocks. As aridity increased, ecosystem-level tree species richness declined on average from four to one species, Douglas-fir site index declined from 30 to 15 m, and ecosystem carbon storage decreased from 565 to 222 Mg ha –1 . Tree species richness was positively and herb species richness negatively correlated with carbon storage. Carbon storage by ecosystem compartment was largest in aboveground live tree biomass, declining in the following order: mineral soils > coarse woody debris and dead standing trees > forest floor > small and fine woody debris > understory plants. Mineral soil carbon at depths of 0-15 cm, 15-35 cm, and 35-55 cm increased with increasing mean annual precipitation and decreasing aridity. Our results indicate that as aridity increases and precipitation decreases, tree species richness, site index and carbon storage in existing Douglas-fir forests declines. However, assisted or natural migration of Douglas-fir into more humid regions could be associated with more diverse, productive, carbon-rich forests. This study informs carbon stock vulnerability and provides empirical data essential for carbon stock forecasts.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Genomic Diversity Evaluation of Populus trichocarpa Germplasm for Rare Variant Genetic Association Studies

Genome-wide association studies are powerful tools to elucidate the genome-to-phenome relationship. In order to explain most of the observed heritability of a phenotypic trait, a sufficient number of individuals and a large set of genetic variants must be examined. The development of high-throughput technologies and cost-efficient resequencing of complete genomes have enabled the genome-wide identification of genetic variation at large scale. As such, almost all existing genetic variation becomes available, and it is now possible to identify rare genetic variants in a population sample. Rare genetic variants that were usually filtered out in most genetic association studies are the most numerous genetic variations across genomes and hold great potential to explain a significant part of the missing heritability observed in association studies. Rare genetic variants must be identified with high confidence, as they can easily be confounded with sequencing errors. In this study, we used a pre-filtered data set of 1,014 pure Populus trichocarpa entire genomes to identify rare and common small genetic variants across individual genomes. We compared variant calls between Platypus and HaplotypeCaller pipelines, and we further applied strict quality filters for improved genetic variant identification. Finally, we only retained genetic variants that were identified by both variant callers increasing calling confidence. Based on these shared variants and after stringent quality filtering, we found high genomic diversity in P. trichocarpa germplasm, with 7.4 million small genetic variants. Importantly, 377k non-synonymous variants (5% of the total) were uncovered. We highlight the importance of genomic diversity and the potential of rare defective genetic variants in explaining a significant portion of P. trichocarpa's phenotypic variability in association genetics. The ultimate goal is to associate both rare and common alleles with poplar's wood quality traits to support selective breeding for an improved bioenergy feedstock.

Genetics & Heredity↗
DOE OSTI2022

Indirect Routes to Aminoacyl-tRNA: The Diversity of Prokaryotic Cysteine Encoding Systems

Universally present aminoacyl-tRNA synthetases (aaRSs) stringently recognize their cognate tRNAs and acylate them with one of the proteinogenic amino acids. However, some organisms possess aaRSs that deviate from the accurate translation of the genetic code and exhibit relaxed specificity toward their tRNA and/or amino acid substrates. Typically, these aaRSs are part of an indirect pathway in which multiple enzymes participate in the formation of the correct aminoacyl-tRNA product. The indirect cysteine (Cys)-tRNA pathway, originally thought to be restricted to methanogenic archaea, uses the unique O -phosphoseryl-tRNA synthetase (SepRS), which acylates the non-proteinogenic amino acid O -phosphoserine (Sep) onto tRNA Cys . Together with Sep-tRNA:Cys-tRNA synthase (SepCysS) and the adapter protein SepCysE, SepRS forms a transsulfursome complex responsible for shuttling Sep-tRNA Cys to SepCysS for conversion of the tRNA-bound Sep to Cys. Here, we report a comprehensive bioinformatic analysis of the diversity of indirect Cys encoding systems. These systems are present in more diverse groups of bacteria and archaea than previously known. Given the occurrence and distribution of some genes consistently flanking SepRS, it is likely that this gene was part of an ancient operon that suffered a gradual loss of its original components. Newly identified bacterial SepRS sequences strengthen the suggestion that this lineage of enzymes may not rely on the m 1 G37 identity determinant in tRNA. Some bacterial SepRSs possess an N-terminal fusion resembling a threonyl-tRNA synthetase editing domain, which interestingly is frequently observed in the vicinity of archaeal SepCysS genes. We also found several highly degenerate SepRS genes that likely have altered amino acid specificity. Cross-analysis of selenocysteine (Sec)-utilizing traits confirmed the co-occurrence of SepCysE and the Sec-utilizing machinery in archaea, but also identified an unusual O -phosphoseryl-tRNA Sec kinase fusion with an archaeal Sec elongation factor in some lineages, where it may serve in place of SepCysE to prevent crosstalk between the two minor aminoacylation systems. These results shed new light on the variations in SepRS and SepCysS enzymes that may reflect adaptation to lifestyle and habitat, and provide new information on the evolution of the genetic code.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Fic Proteins Inhibit the Activity of Topoisomerase IV by AMPylation in Diverse Bacteria

The Fic (filamentation induced by cyclic AMP) domain is a widely distributed motif with a conserved sequence of HPFx[D/E]GN[G/K]R, some of which regulate cellular activity by catalyzing the transfer of the AMP moiety from ATP to protein substrates. Some Fic proteins, including Fic-1 from the soil bacterium Pseudomonas fluorescens strain 2P24, have been shown to inhibit bacterial DNA replication by AMPylating the subunit B of DNA gyrase (GyrB), but the biochemical activity and cellular target of most Fic proteins remain unknown. Here, we report that Fic-2, which is another Fic protein from strain 2P24 and Fic-1 AMPylate the topoisomerase IV ParE at Tyr 109 . We also examined Fic proteins from several phylogenetically diverse bacteria and found that those from Yersinia pseudotuberculosis and Staphylococcus aureus AMPylate ParE and GrlB, the counterpart of ParE in Gram-positive bacteria, respectively. Modification by Fic-1 of P. fluorescens and FicY of Y. pseudotuberculosis inhibits the relaxation activity of topoisomerase IV. Consistent with the inhibition of ParE activity, ectopic expression of these Fic proteins causes cell filamentation akin to the canonical par phenotype in which nucleoids are assembled in the center of elongated cells, a process accompanied by the induction of the SOS response. Our results establish that Fic proteins from diverse bacterial species regulate chromosome division and cell separation in bacteria by targeting ParE.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Large-scale prediction of outer-membrane multiheme cytochromes uncovers hidden diversity of electroactive bacteria and underlying pathways

Multi-heme cytochromes (MHCs), together with accessory proteins like porins and periplasmic cytochromes, enable microbes to transport electrons between the cytoplasmic membrane and extracellular substrates (e.g., minerals, electrodes, other cells). Extracellular electron transfer (EET) has been described in multiple systems; yet, the broad phylogenetic and mechanistic diversity of these pathways is less clear. One commonality in EET-capable systems is the involvement of MHCs, in the form of porin-cytochrome complexes, pili-like cytochrome polymers, and lipid-anchored extracellular cytochromes. Here, we put forth MHCscan—a software tool for identifying MHCs and identifying potential EET capability. Using MHCscan, we scanned ~60,000 bacterial and 2,000 archaeal assemblies, and identify a diversity of MHCs, many of which represent enzymes with no known function, and many found within organisms not previously known to be electroactive. In total, our scan identified ~1,400 unique enzymes, each encoding more than 10 heme-binding motifs. In our analysis, we also find evidence for modularity and flexibility in MHC-dependent EET pathways, and suggest that MHCs may be far more common than previously recognized, with many facets yet to be discovered. We present MHCscan as a lightweight and user-friendly software tool that is freely available: https://github.com/Arkadiy-Garber/MHCscan.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Mapping of flumioxazin tolerance in a snap bean diversity panel leads to the discovery of a master genomic region controlling multiple stress resistance genes

Effective weed management tools are crucial for maintaining the profitable production of snap bean (Phaseolus vulgaris L.). Preemergence herbicides help the crop to gain a size advantage over the weeds, but the few preemergence herbicides registered in snap bean have poor waterhemp (Amaranthus tuberculatus) control, a major pest in snap bean production. Waterhemp and other difficult-to-control weeds can be managed by flumioxazin, an herbicide that inhibits protoporphyrinogen oxidase (PPO). However, there is limited knowledge about crop tolerance to this herbicide. We aimed to quantify the degree of snap bean tolerance to flumioxazin and explore the underlying mechanisms. We investigated the genetic basis of herbicide tolerance using genome-wide association mapping approach utilizing field-collected data from a snap bean diversity panel, combined with gene expression data of cultivars with contrasting response. The response to a preemergence application of flumioxazin was measured by assessing plant population density and shoot biomass variables. Snap bean tolerance to flumioxazin is associated with a single genomic location in chromosome 02. Tolerance is influenced by several factors, including those that are indirectly affected by seed size/weight and those that directly impact the herbicide's metabolism and protect the cell from reactive oxygen species-induced damage. Transcriptional profiling and co-expression network analysis identified biological pathways likely involved in flumioxazin tolerance, including oxidoreductase processes and programmed cell death. Transcriptional regulation of genes involved in those processes is possibly orchestrated by a transcription factor located in the region identified in the GWAS analysis. Several entries belonging to the Romano class, including Bush Romano 350, Roma II, and Romano Purpiat presented high levels of tolerance in this study. The alleles identified in the diversity panel that condition snap bean tolerance to flumioxazin shed light on a novel mechanism of herbicide tolerance and can be used in crop improvement.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2025

Fire and Drought Affect Multiple Aspects of Diversity in a Migratory Bird Stopover Community

Drought and high-severity, stand-replacing wildfires can have substantial impacts on the composition of avian communities, including stop-over communities during migration. An inextricable link exists between drought and wildfire, each operating and impacting across different timescales. Many studies have found nonlinear avian abundance trends in breeding community time series data that include pre- and post-fire observations, describing an initial decrease in abundance followed by rapid increases that can attenuate over time. Here, we use a fall bird-banding dataset to evaluate shifts in a drought-impacted avian community following wildfire from taxonomic, functional, and phylogenetic perspectives. We looked at the community as a whole and also categorized birds as residents, migrants, and breeders to assess potential varying responses at the study site. We observed post-fire shifts in functional and phylogenetic diversity that corresponded to changes in vegetation. An influx of migratory insectivores post-fire drove much of the variation between pre- and post-fire avian communities and toward a more related, less phylogenetically dispersed community. A concurrent monsoon season drought was also associated with functional and phylogenetic diversity, highlighting the intertwined pulse press effects on avian communities. Overall, our results suggest that, although bird communities are immediately impacted by fire-driven resource changes, they can rebound over time, it is unclear how long-term drought may continue to shape the composition of these avian communities.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Microbial Diversity Associated with the Pollen Stores of Captive-Bred Bumble Bee Colonies

The pollen stores of bumble bees host diverse microbiota that influence overall colony fitness. Yet, the taxonomic identity of these symbiotic microbes is relatively unknown. In this descriptive study, we characterized the microbial community of pollen provisions within captive-bred bumble bee hives obtained from two commercial suppliers located in North America. Findings from 16S rRNA and ITS gene-based analyses revealed that pollen provisions from the captive-bred hives shared several microbial taxa that have been previously detected among wild populations. While diverse microbes across phyla Firmicutes, Proteobacteria, Bacteroidetes, Actinobacteria, and Ascomycota were detected in all commercial hives, significant differences were detected at finer-scale taxonomic resolution based on the supplier source. The causative agent of chalkbrood disease in honey bees, Ascosphaera apis, was detected in all hives obtained from one supplier source, although none of the hives showed symptoms of infection. The shared core microbiota across both commercial supplier sources consisted of two ubiquitous bee-associated groups, Lactobacillus and Wickerhamiella/Starmerella clade yeasts that potentially contribute to the beneficial function of the microbiome of bumble bee pollen provisions.

16S rRNA gene↗
DOE OSTI2021

Invertebrate and Plant Community Diversity of an Illinois Corn–Soybean Field with Integrated Shrub Willow Bioenergy Buffers

Perennial bioenergy crop production within intensively managed agricultural landscapes has the potential to improve the sustainability, resiliency, and diversity of these landscapes. Perennial crops are ideal because of their high production potential on marginal lands relative to grain crops (e.g., corn and soybean) and their ability to provide additional ecosystem service benefits. When agricultural landscapes are designed to target specific services, determining the non-targeted services of perennial bioenergy crops can further promote their adoption. This 3-year study addresses this proposition by evaluating the canopy invertebrates and understory plant (non-target crop) communities using bee bowls and point measurement of ground coverage, respectively, within a grain field integrated with shrub willow buffer systems designed for nutrient loss reduction. Greater plant diversity and richness were observed under willow than under grain, resembling that of the surrounding riparian community with more perennial, native species. However, the same relationship did not hold true for invertebrates, with seasonality having a significant influence resulting in similar communities observed in willow and grain plots. The presence of unique plant and invertebrate species in both willow and grain crops as well as foraging pollinators on both crop and non-target crop species highlights the importance of habitat heterogeneity for supporting biodiversity and the potential benefits of buffer bioenergy landscape designs.

09 BIOMASS FUELS↗
DOE OSTI2024

Activity assays of NnlA homologs suggest the natural product N -nitroglycine is degraded by diverse bacteria

Linear nitramines (R–N(R′)NO 2 ; R′ = H or alkyl) are toxic compounds, some with environmental relevance, while others are rare natural product nitramines. One of these natural product nitramines is N -nitroglycine (NNG), which is produced by some Streptomyces strains and exhibits antibiotic activity towards Gram-negative bacteria. An NNG degrading heme enzyme, called NnlA, has recently been discovered in the genome of Variovorax sp. strain JS1663 ( Vs NnlA). Evidence is presented that NnlA and therefore, NNG degradation activity is widespread. To achieve this objective, we characterized and tested the NNG degradation activity of five Vs NnlA homologs originating from bacteria spanning several classes and isolated from geographically distinct locations. E. coli transformants containing all five homologs converted NNG to nitrite. Four of these five homologs were isolated and characterized. Each isolated homolog exhibited similar oligomerization and heme occupancy as Vs NnlA. Reduction of this heme was shown to be required for NnlA activity in each homolog, and each homolog degraded NNG to glyoxylate, NO 2 − and NH 4 + in accordance with observations of Vs NnlA. It was also shown that NnlA cannot degrade the NNG analog 2-nitroaminoethanol. The combined data strongly suggest that NnlA enzymes specifically degrade NNG and are found in diverse bacteria and environments. These results imply that NNG is also produced in diverse environments and NnlA may act as a detoxification enzyme to protect bacteria from exposure to NNG.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2021

Physical Drivers of Emission-line Diversity of SDSS Seyfert 2s and LINERs after Removal of Contributions from Star Formation

Ionization sources other than H ιι regions give rise to the right-hand branch in the standard ([N ιι]) BPT diagram, populated by Seyfert 2s and LINERs. However, because the majority of Seyfert/LINER hosts are star-forming (SF), H ιι regions contaminate the observed lines to some extent, making it unclear if the position along the branch is merely due to various degrees of mixing between pure Seyferts/LINERs and SF, or whether it reflects the intrinsic diversity of Seyfert/LINER ionizing sources. In this study, we empirically remove SF contributions in ~100,000 Seyferts/LINERs from SDSS using the doppelganger method. Here, we find that mixing is not the principal cause of the extended morphology of the observed branch. Rather, Seyferts/LINERs intrinsically have a wide range of line ratios. Variations in ionization parameter and metallicity can account for much of the diversity of Seyfert/LINER line ratios, but the hardness of the ionization field also varies significantly. Furthermore, our k -means classification on seven decontaminated emission lines reveals that LINERs are made up of two populations, which we call soft and hard LINERs. The Seyfert 2s differ from both types of LINERs primarily by higher ionization parameter, whereas the two LINER types mainly differ from each other (and from star-forming regions) in the hardness of the radiation field. We confirm that the [N ιι] BPT diagram more efficiently identifies LINERs than [S ιι] and [O ι] diagnostics, because in the latter many LINERs, especially soft ones, occupy the same location as pure starformers, even after the SF has been removed from LINER emission.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

A Self-interacting Dark Matter Solution to the Extreme Diversity of Low-mass Halo Properties

Abstract The properties of low-mass dark matter (DM) halos appear to be remarkably diverse relative to cold, collisionless DM predictions, even in the presence of baryons. We show that self-interacting DM (SIDM) can simultaneously explain observations of halo diversity at two opposite extremes—the inner density profile of the dense substructure perturbing the strong lens galaxy SDSSJ0946+1006 and the rotation curves of isolated, gas-rich ultradiffuse galaxies (UDGs). To achieve this, we present the first cosmological zoom-in simulation featuring strong DM self-interactions in a galaxy group environment centered on a 10 13 M ⊙ host halo. In our SIDM simulation, most surviving subhalos of the group-mass host are deeply core-collapsed, yielding excellent candidates for the observed dense strong-lens perturber. Self-interactions simultaneously create kiloparsec-scale cores in low-concentration isolated halos, which could host the observed UDGs. Our scenario can be further tested with observations of DM structure and galaxies over a wide mass range.

Astronomy & Astrophysics↗
DOE OSTI2020

Evolution of a plant gene cluster in Solanaceae and emergence of metabolic diversity

Plants produce phylogenetically and spatially restricted, as well as structurally diverse specialized metabolites via multistep metabolic pathways. Hallmarks of specialized metabolic evolution include enzymatic promiscuity and recruitment of primary metabolic enzymes and examples of genomic clustering of pathway genes. Solanaceae glandular trichomes produce defensive acylsugars, with sidechains that vary in length across the family. We describe a tomato gene cluster on chromosome 7 involved in medium chain acylsugar accumulation due to trichome specific acyl-CoA synthetase and enoyl-CoA hydratase genes. This cluster co-localizes with a tomato steroidal alkaloid gene cluster and is syntenic to a chromosome 12 region containing another acylsugar pathway gene. We reconstructed the evolutionary events leading to this gene cluster and found that its phylogenetic distribution correlates with medium chain acylsugar accumulation across the Solanaceae. This work reveals insights into the dynamics behind gene cluster evolution and cell-type specific metabolite diversity.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Increasing Diversity in the Field of Radiological Security

This paper will report on a diversity initiative undertaken by the NNSA Office of Radiological Security (ORS), Brookhaven National Laboratory and the Institute of Nuclear Materials Management. This paper will report on the planning associated with inclusion of radiological and nuclear security in the annual meeting program, the process of identifying and selecting individuals who will receive grants to attend the meeting, the expected impact of the INMM/ORS diversity initiative on the nuclear security community, and lessons learned.

98 NUCLEAR DISARMAMENT, SAFEGUARDS, AND PHYSICAL P↗