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At least 271 records · Page 15

Galaxy Cluster Contribution to the Diffuse Extragalactic Ultraviolet Background

The diffuse ultraviolet background radiation has been mapped over most of the sky with 2′ resolution using data from the Galaxy Evolution Explorer survey. We utilize this map to study the correlation between the UV background and clusters of galaxies discovered via the Sunyaev–Zeldovich effect in the Planck survey. We use only high Galactic latitude (|b|>60{sup ∘}) galaxy clusters to avoid contamination by Galactic foregrounds, and we only analyze clusters with a measured redshift. This leaves us with a sample of 142 clusters over the redshift range of 0.02 ≤ z ≤ 0.72, which we further subdivide into four redshift bins. In analyzing our stacked samples binned by redshift, we find evidence for a central excess of UV background light compared to local backgrounds for clusters with z < 0.3. We then stacked these z < 0.3 clusters to find a statistically significant excess of 12 ± 2.3 photon cm{sup −2} s{sup −1} sr{sup −1} Å{sup −1} over the median of ∼380 photon cm{sup −2} s{sup −1} sr{sup −1} Å{sup −1} measured around random blank fields. We measure the stacked radial profile of these clusters, and find that the excess UV radiation decays to the level of the background at a radius of ∼1 Mpc, roughly consistent with the maximum radial extent of the clusters. Analysis of possible physical processes contributing to the excess UV brightness indicates that non-thermal emission from relativistic electrons in the intracluster medium and faint, unresolved UV emission from cluster member galaxies and intracluster light are likely the dominant contributors.

79 ASTRONOMY AND ASTROPHYSICS↗

A dynamic intron retention program enriched in RNA processing genes regulates gene expression during terminal erythropoiesis

Differentiating erythroblasts execute a dynamic alternative splicing program shown here to include extensive and diverse intron retention (IR) events. Cluster analysis revealed hundreds of developmentallydynamic introns that exhibit increased IR in mature erythroblasts, and are enriched in functions related to RNA processing such as SF3B1 spliceosomal factor. Distinct, developmentally-stable IR clusters are enriched in metal-ion binding functions and include mitoferrin genes SLC25A37 and SLC25A28 that are critical for iron homeostasis. Some IR transcripts are abundant, e.g. comprising ~50% of highly-expressed SLC25A37 and SF3B1 transcripts in late erythroblasts, and thereby limiting functional mRNA levels. IR transcripts tested were predominantly nuclearlocalized. Splice site strength correlated with IR among stable but not dynamic intron clusters, indicating distinct regulation of dynamically-increased IR in late erythroblasts. Retained introns were preferentially associated with alternative exons with premature termination codons (PTCs). High IR was observed in disease-causing genes including SF3B1 and the RNA binding protein FUS. Comparative studies demonstrated that the intron retention program in erythroblasts shares features with other tissues but ultimately is unique to erythropoiesis. Finally, we conclude that IR is a multi-dimensional set of processes that post-transcriptionally regulate diverse gene groups during normal erythropoiesis, misregulation of which could be responsible for human disease.

59 BASIC BIOLOGICAL SCIENCES↗

Regional and Model-Specific Response Types in A Global Gridded Crop Model Ensemble

Crop models are often employed to project crop yields under changing conditions such as global warming and associated management change for adaptation. Multi-model ensembles are promoted to enhance the robustness of projections, but questions remain on what causes often large differences between projections of individual models. Global Gridded Crop Models (GGCMs) are especially exposed to this question when applied for assessing climate change impacts, adaptation, environmental impacts of agricultural production, because their results are used in downstream analyses, such as in integrated assessment or economic modeling for projecting future land-use change. Even though global gridded crop models are often based on detailed field-scale models or have implemented similar modeling principles in other ecosystem models, global-scale models are subject to substantial uncertainties from both model structure and parametrization as well as from calibration and input data quality. AgMIP’s Global Gridded Crop Model Intercomparison (GGCMI) has thus set out to intercompare GGCMs in order to evaluate model performance, describe model uncertainties, identify inconsistencies within the ensemble and underlying reasons, and to ultimately improve models and modeling capacities. In phase 2 of the GGCMI activities, 12 modeling groups followed a modeling protocol that asked for up to 1404 31-year global simulations at 0.5 arc-degree spatial resolution to assess models’ sensitivities to changes in carbon dioxide (C; 4 different levels) temperature (T; 7 different offset levels), water supply (W; 9 levels), and nitrogen (N; 3 levels), the so-called CTWN experiment (Franke et al. 2020; http://dx.doi.org/10.5194/gmd-13-2315-2020). We here present analyses of model response types using impact response surfaces along the C, T, W, and N dimensions, respectively and collectively. Doing so, we can understand differences in simulated responses per driver rather than aggregated changes in yields. We find that models’ sensitivities to the individual driver dimensions are substantially different and often more different across models than across regions. A cluster analysis finds regional and model-specific patterns. There is some agreement across models with respect to the spatial patterns of response types but strong differences in the distribution of response type clusters across models suggests that models need to undergo further scrutiny. We suggest establishing standards in model process evaluation not only against historical dynamics but also against dedicated experiments across the CTWN dimensions.

crop models↗

A Sulfoxide-Based Isobaric Labelling Reagent for Accurate Quantitative Mass Spectrometry

Modern proteomics requires reagents for exact quantification of peptides in complex mixtures. Peptide labelling is most typically achieved with isobaric tags that consist of a balancer and a reporter part that separate in the gas phase. An ingenious distribution of stable isotopes offers multiple reagents with identical molecular weight but a different mass of the reporter groups, allowing relative quantification of multiple samples in one measurement. In this work, we discuss a new isobaric labelling reagent, where the balancer and the reporter are linked by a sulfoxide group, which, based on the sulfoxide pyrolysis, leads to easy and asymmetric cleavage at low fragmentation energy. The fragmentation of our new design is significantly improved, yielding more intense complementary ion signals, allowing complementary ion cluster analysis as well.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Cloud regimes over the Amazon Basin: perspectives from the GoAmazon2014/5 campaign

Abstract. Radiosonde observations collected during the GoAmazon2014/5 campaign are analyzed to identify the primary thermodynamic regimes accompanying different modes of convection over the Amazon. This analysis identifies five thermodynamic regimes that are consistent with traditional Amazon calendar definitions of seasonal shifts, which include one wet, one transitional, and three dry season regimes based on a k-means cluster analysis. A multisensor ground-based approach is used to project associated bulk cloud and precipitation properties onto these regimes. This is done to assess the propensity for each regime to be associated with different characteristic cloud frequency, cloud types, and precipitation properties. Additional emphasis is given to those regimes that promote deep convective precipitation and organized convective systems. Overall, we find reduced cloud cover and precipitation rates to be associated with the three dry regimes and those with the highest convective inhibition. While approximately 15 % of the dataset is designated as organized convection, these events are predominantly contained within the transitional regime.

54 ENVIRONMENTAL SCIENCES↗

Effect of scene illumination conditions on digital enhancement techniques of multispectral scanner LANDSAT images

Two sets of MSS/LANDSAT data with solar elevation ranging from 22 deg to 41 deg were used at the Image-100 System to implement the Eliason et alii technique for extracting the topographic modulation component. An unsupervised cluster analysis was used to obtain an average brightness image for each channel. Analysis of the enhanced imaged shows that the technique for extracting topographic modulation component is more appropriated to MSS data obtained under high sun elevation ngles. Low sun elevation increases the variance of each cluster so that the average brightness doesn't represent its albedo proprties. The topographic modulation component applied to low sun elevation angle damages rather than enhance topographic information. Better results were produced for channels 4 and 5 than for channels 6 and 7.

Parada, N. D. J.↗

Possible identification of a cluster of galaxies at redshift z = 3.4

We report the possible detection of a cluster of 16 radio-quiet galaxies at z = 3.4, identified in the field around the optically thick absorption system toward Q0000-263 at z(sub abs) = 3.390. Two of them, a Lyman alpha emitter at z = 3.428 and the galaxy responsible for the absorption system, have redshifts spectroscopically confirmed. The other 14 galaxies identified using a multicolor imaging technique designed to detect sources in the redshift interval 3 approximately less than z approximately less than 3.5 which are characterized by a Lyman discontinuity in an otherwise flat spectrum, have broad-band spectral energy distributions identical to the two galaxies with known redshift. They are spatially distributed in two apparent clumps, around the damped absorber and the Lyman alpha galaxy, respectively. A clustering analysis excludes with 98.8% confidence that this association is a realization of a Poissonian distribution and confirms that the observed clumps are real. The implications are that the 16 galaxies are members of a cluster at z approximately equals 3.4, by far the most distant ever detected. An estimate of the mass bounded in stars of this cluster is 3 x 10(exp 12) solar mass (q(sub 0) = 0 and H(sub 0) = 50 km/s/Mpc throughout this Letter), while the total mass (baryonic + dark) is 6 x 10(exp 14) solar mass. We also estimate that at z = 3.4 the correlation length is 2.2 Mpc, which, compared to the present value of 11 Mpc, suggests that the clustering evolution is still close to the linear regime.

Giavalisco, Mauro↗

Nasa Space Flight Instruments: Cost Time Trends

Are NASA’s space flight instruments becoming cheaper or more expensive as time marches forward? After analyzing the costs of hundreds of instruments launched over the last 30 years, the short answer to this question is no… and yes. This paper gives a visual analysis of the cost time trends for various NASA space flight instrument types, such as optical, particles detectors, fields detectors and microwave instruments. In addition to the statistical approaches utilized, such as significance tests, cluster analysis and principle components analysis (PCA), we will also discuss the intangibles which are likely at play, including technological progress, NASA policy and the luck of the draw associated with mission manifests. This analysis was performed as the main driver for the NASA Instrument Cost Model (NICM) recent cost estimating model redesign. Started in 2004, the first version of NICM was based off of instruments launched from 1985-2005, or 20 years’ worth of data. As NICM hit its 10-year anniversary, we wanted to know: should NICM continue to only use the most recent 20 years’ worth of data (1995-2015)? Are instruments becoming cheaper or more expensive as time marches forward? There is evidence in favor of a drop in the median dollar-per-kg value across some instrument types, but little in others. Whereas further research is needed to substantiate, Particles and Optical-Planetary instrument types show moderate to strong evidence of a downward trend in dollar-per-kg. Further research is required to study the nature of this trend (shift, taper, cyclic, etc.). Little evidence for a similar downward trend was detected for Fields or Microwave instruments, or Optical instruments on Earth Orbiting spacecraft. We presented evidence in favor of a drop in the median dollar-per-kg value for Particles and Optical-Planetary instrument types. While similar evidence was weak at best for Fields and Microwave instruments. We can speculate as to the causes for this effect, but we are also equipped to begin to rule out, or at least prioritize, some of the suspected drivers. We observed, for Particles and Optical-Planetary instruments, that perhaps a launch manifest effect was playing part of the role in the observed decrease in dollar-per-kg over the years, noting that the more flagship class missions, which have more money to spend on their instruments, were seen in the earlier years in our data, versus the later years which were dominated by less expensive class missions. However, if this were a dominating driver, would we not have seen the downward trend in the Fields and Microwave instruments as well, which were drawn from that same launch manifest? The fact that we did not observe this helps us rule out the launch manifest effect, and other drivers, such as advances in technology, that seem to be more likely suspects. In that case, however, why would technology advances be helping the Particles and Optical-Planetary instruments only? Why would it not be impacting Optical-Earth Orbiting instruments? Further suspects were looked at as well and ruled out, such as the “Faster, Better, Cheaper”era of NASA development which did not seem to actually impact trends by instrument type on a dollar-perkg scale. VI. Future Work A. Time Series Detailed Statistical Assessment The analysis discussed above sets the foundation for a more rigorous time series analysis of the data. Time series analysis will further explore evidence to-date of time trends for the instrument types which showed the strongest indicators for a decrease in dollar-per-kg: Optical (Planetary) and Particles instruments. More than providing evidence and top-level significance tests, time series analysis would help elucidate what kind of trend that exists in the data, their significance and allow statistically based forecasting (see Figure 10)

Mrozinksi, Joseph↗

The environmental dependence of the stellar mass of active galactic nucleus host galaxies and dependence of the clustering properties of active galactic nucleus host galaxies on the stellar mass

Abstract We used two volume‐limited active galactic nucleus (AGN) host galaxy samples constructed by Deng & Wen (2020, RMxAA , 56, 87), and explored the environmental dependence of the stellar mass of AGN host galaxies. In the luminous volume‐limited AGN host galaxy sample, the stellar mass of AGN host galaxies apparently depends on local environments: high mass AGN host galaxies exist preferentially in the dense regions of the universe, while low mass AGN host galaxies are located preferentially in low density regions. But in the faint volume‐limited AGN host galaxy sample, this dependence is fairly weak. We also examined the dependence of the clustering properties of AGN host galaxies on the stellar mass by cluster analysis, and found that in the luminous volume‐limited AGN host galaxy sample, low mass AGN host galaxies preferentially form isolated galaxies, close pairs, and small groups, while high mass AGN host galaxies preferentially inhabit the dense groups and clusters. A substantial dependence of the clustering properties of AGN host galaxies on the stellar mass is also observed in the faint volume‐limited AGN host galaxy sample, which is inconsistent with the environmental dependence of the stellar mass of AGN host galaxies in the faint volume‐limited AGN host galaxy sample. This is likely due to the galaxy number of the faint volume‐limited AGN host galaxy sample being too small to ensure an ideal statistical analysis.

Deng, Xin‐Fa↗

Feasibility Analyses for the Microgrid of the Mountain in the Cordillera Central Region of Puerto Rico

Distributed energy resource (DER) development can benefit communities through improvement of access to reliable electricity and a resilient energy system. Many place-specific considerations must be accounted for when designing electrical systems with co-located generation and loads. This paper presents an overview of four studies focusing on different aspects for regional DER development in the Cordillera Central region of Puerto Rico, including a grid and load stability study with the introduction of solar energy generation, microgrid design based on the solar resource in the area, resilience considerations during power outage scenarios, and qualitative risk aspects for components in the microgrid. Additionally, a conceptual substation microgrid analysis is conducted using the Microgrid Design Toolkit (MDT) to evaluate trade-offs between cost and energy availability, providing insights into optimal design strategies. A microgrid resilience assessment is performed using the Resilient Nodal Cluster Analysis Tool (ReNCAT) to identify critical loads and evaluates their accessibility during outages, emphasizing the importance of community needs. Finally, a qualitative risk assessment utilizing Hazard and Operability Analysis (HAZOP) methods highlights potential hazards and mitigations for microgrid components, ensuring robust system design and operation.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Mimas: Preliminary Evidence For Amorphous Water Ice from VIMS

We have conducted a statistical clustering analysis (1,2) on a mosaic of VIMS data cubes obtained on February 13, 2010, for Saturn s satellite Mimas. Seven VIMS cubes were geometrically projected and re-sampled to a common spatial resolution. The clustering technique consists of a partitioning algorithm coupled to a criterion that prevents sub-optimal solutions and tests for the influence of random noise in the measurements. The clustering technique is agnostic about the meaning of the clusters, and scientific interpretation requires their a posteriori evaluation. The preliminary results yielded five clusters, demonstrating that spectral variability across Mimas surface is statistically significant. The ratios of the means calculated for each of the clusters show structure within the 1.6- micron water ice band, as well as the shape and the central wavelength of the strong ice band at 2 micron, that map spatially in patterns apparently related to the topography of Mimas, in particular certain regions in and around Herschel crater. The mean spectra of the five clusters, show similarities with laboratory spectra of amorphous and crystalline H2O ice (3) that are suggestive of the presence of an amorphous ice component in certain regions of Mimas, notably on the central peak of Herschel, on the crater floor, and in faults surrounding the crater. This may represent a mixture of both ice phases, or perhaps a layer of amorphous ice on a base of crystalline ice. Another possible occurrence of amorphous ice appears southwest of Herschel, close to the south pole.

Cruikshank, Dale P.↗

De novo Characterization of the Platycladus orientalis Transcriptome and Analysis of Photosynthesis-Related Genes during Aging

In China, Platycladus orientalis has a lifespan of thousands of years. The long lifespan of these trees may be relevant for the characterization of plant aging at the molecular level. However, the molecular mechanism of the aging process of P. orientalis is still unknown. To explore the relationship between age and growth of P. orientalis , we analyzed physiological changes during P. orientalis senescence. The malondialdehyde content was greater in 200-, 700-, and 1100-year-old ancient trees than in 20-year-old trees, whereas the peroxidase and superoxide dismutase activities, as well as the soluble protein content, exhibited the opposite trend. Furthermore, we performed a de novo transcriptome assembly using RNA-Seq and obtained 48,044 unigenes with an average length of 896 bp. A total of 418 differentially expressed genes were identified in different stages of aging of P. orientalis . Clustering analysis revealed distinct timepoints at which the oxidation–reduction and photosynthesis pathways changed. Eight clusters with distinct expression patterns were identified. The expression levels of photosynthesis-, oxidation–reduction-, and transporter-related genes were down-regulated, whereas those of transcription-, signaling-, and senescence-related genes were up-regulated during aging. In addition, consistent with the most obviously down-regulated genes of photosynthesis-related genes, the photosynthetic indexes including chlorophyll a and b levels decreased steadily during P. orientalis aging. This study combined transcriptome with physiological and biochemical data, revealing potential candidate genes influencing senescence during P. orientalis aging.

59 BASIC BIOLOGICAL SCIENCES↗

Crowdsourcing Dialect Characterization through Twitter

We perform a large-scale analysis of language diatopic variation using geotagged microblogging datasets. By collecting all Twitter messages written in Spanish over more than two years, we build a corpus from which a carefully selected list of concepts allows us to characterize Spanish varieties on a global scale. A cluster analysis proves the existence of well defined macroregions sharing common lexical properties. Remarkably enough, we find that Spanish language is split into two superdialects, namely, an urban speech used across major American and Spanish citites and a diverse form that encompasses rural areas and small towns. The latter can be further clustered into smaller varieties with a stronger regional character.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

Relating Molecular Properties to the Persistence of Marine Dissolved Organic Matter with Liquid Chromatography–Ultrahigh-Resolution Mass Spectrometry

Marine dissolved organic matter (DOM) contains a complex mixture of small molecules that eludes rapid biological degradation. Spatial and temporal variations in the abundance of DOM reflect the existence of fractions that are removed from the ocean over different time scales, ranging from seconds to millennia. However, it remains unknown whether the intrinsic chemical properties of these organic components relate to their persistence. Here, we elucidate and compare the molecular compositions of distinct DOM fractions with different lability along a water column in the North Atlantic Gyre. Our analysis utilized ultrahigh-resolution Fourier transform ion cyclotron resonance mass spectrometry at 21 T coupled to liquid chromatography and a novel data pipeline developed in CoreMS that generates molecular formula assignments and metrics of isomeric complexity. Clustering analysis binned 14 857 distinct molecular components into groups that correspond to the depth distribution of semilabile, semirefractory, and refractory fractions of DOM. The more labile fractions were concentrated near the ocean surface and contained more aliphatic, hydrophobic, and reduced molecules than the refractory fraction, which occurred uniformly throughout the water column. These findings suggest that processes that selectively remove hydrophobic compounds, such as aggregation and particle sorption, contribute to variable removal rates of marine DOM.

54 ENVIRONMENTAL SCIENCES↗

Intra-Hour Dispatch and Automatic Generator Control Demonstration with Solar Forecasting - Final Report

In this project we address multiple resource integration challenges associated with increasing levels of solar penetration that arise from the variability and uncertainty in solar irradiance. We will model the SMUD service region as its own balancing region, and develop an integrated, real-time operational tool that takes solar-load forecast uncertainties into consideration and commits optimal energy resources and reserves for intra-hour and intra-day decisions. The primary objectives of this effort are to reduce power system operation cost by committing appropriate amount of energy resources and reserves, as well as to provide operators a prediction of the generation fleet’s behavior in real time for realistic PV penetration scenarios. The proposed methodology includes the following steps: clustering analysis on the expected solar variability per region for the SMUD system, Day-ahead (DA) and real-time (RT) load forecasts for the entire service areas, 1-year of intra-hour CPR forecasts for cluster centers, 1-year of smart re-forecasting CPR forecasts in real-time for determination of irreducible errors, and uncertainty quantification for integrated solar-load for both distributed and central stations (selected locations within service region) PV generation.

14 SOLAR ENERGY↗

Comparative hazard analysis and toxicological modeling of diverse nanomaterials using the embryonic zebrafish (EZ) metric of toxicity

The integration of rapid assays, large data sets, informatics and modeling can overcome current barriers in understanding nanomaterial structure-toxicity relationships by providing a weight-of-the-evidence mechanism to generate hazard rankings for nanomaterials. Here we present the use of a rapid, low-cost assay to perform screening-level toxicity evaluations of nanomaterials in vivo. Calculated EZ Metric scores, a combined measure of morbidity and mortality, were established at realistic exposure levels and used to develop a predictive model of nanomaterial toxicity. Hazard ranking and clustering analysis of 68 diverse nanomaterials revealed distinct patterns of toxicity related to both core composition and outermost surface chemistry of nanomaterials. The resulting clusters guided the development of a predictive model of gold nanoparticle toxicity to embryonic zebrafish. In addition, our findings suggest that risk assessments based on the size and core composition of nanomaterials alone may be wholly inappropriate, especially when considering complex engineered nanomaterials. These findings reveal the need to expeditiously increase the availability of quantitative measures of nanomaterial hazard and broaden the sharing of that data and knowledge to support predictive modeling. In addition, research should continue to focus on methodologies for developing predictive models of nanomaterial hazard based on sub-lethal responses to low dose exposures.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

Unique and conserved genome regions in Vibrio harveyi and related species in comparison with the shrimp pathogen Vibrio harveyi CAIM 1792

Vibrio harveyi CAIM 1792 is a marine bacterial strain that causes mortality in farmed shrimp in north-west Mexico, and the identification of virulence genes in this strain is important for understanding its pathogenicity. The goal of this study was to compare the V. harveyi CAIM 1792 genome with related genome sequences to determine their phylogenic relationship and explore unique regions in silico that differentiate this strain from other V. harveyi strains. Twenty-one newly sequenced genomes were compared in silico against the CAIM 1792 genome at nucleotidic and predicted proteome levels. The proteome of CAIM 1792 had higher similarity to those of other V. harveyi strains (78 %) than to those of the other closely related species Vibrio owensii (67 %), Vibrio rotiferianus (63 %) and Vibrio campbellii (59 %). Pan-genome ORFans trees showed the best fit with the accepted phylogeny based on DNA–DNA hybridization and multi-locus sequence analysis of 11 concatenated housekeeping genes. SNP analysis clustered 34/38 genomes within their accepted species. Laslty, the pangenomic and SNP trees showed that V. harveyi is the most conserved of the four species studied and V. campbellii may be divided into at least three subspecies, supported by intergenomic distance analysis. BLASTP atlases were created to identify unique regions among the genomes most related to V. harveyi CAIM 1792; these regions included genes encoding glycosyltransferases, specific type restriction modification systems and a transcriptional regulator, LysR, reported to be involved in virulence, metabolism, quorum sensing and motility.

59 BASIC BIOLOGICAL SCIENCES↗

Analysis of xylem formation in pine by cDNA sequencing

Secondary xylem (wood) formation is likely to involve some genes expressed rarely or not at all in herbaceous plants. Moreover, environmental and developmental stimuli influence secondary xylem differentiation, producing morphological and chemical changes in wood. To increase our understanding of xylem formation, and to provide material for comparative analysis of gymnosperm and angiosperm sequences, ESTs were obtained from immature xylem of loblolly pine (Pinus taeda L.). A total of 1,097 single-pass sequences were obtained from 5' ends of cDNAs made from gravistimulated tissue from bent trees. Cluster analysis detected 107 groups of similar sequences, ranging in size from 2 to 20 sequences. A total of 361 sequences fell into these groups, whereas 736 sequences were unique. About 55% of the pine EST sequences show similarity to previously described sequences in public databases. About 10% of the recognized genes encode factors involved in cell wall formation. Sequences similar to cell wall proteins, most known lignin biosynthetic enzymes, and several enzymes of carbohydrate metabolism were found. A number of putative regulatory proteins also are represented. Expression patterns of several of these genes were studied in various tissues and organs of pine. Sequencing novel genes expressed during xylem formation will provide a powerful means of identifying mechanisms controlling this important differentiation pathway.

Non-NASA Center↗