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At least 271 records · Page 15

Review of Tools for Identifying, Planning, and Implementing Habitat Restoration for Pacific Salmon and Steelhead

Abstract A key challenge in watershed restoration is identifying the appropriate assessments, data, and analyses needed to identify disrupted natural processes, lost and degraded habitats, and limiting factors to ultimately identify and design successful restoration projects. This has proven particularly challenging for large restoration programs focused on recovery of threatened and endangered salmon and trout where numerous tools, models, and other assessments have been developed to assist with habitat restoration at the watershed, reach, and project scale. Unfortunately, it is often unclear which step in the restoration process these various assessment tools will actually address. To assist with identifying the appropriate assessment tool (e.g., model, data collection, analysis, and survey), we reviewed major categories of watershed restoration assessment tools to determine their goals, inputs, outputs, and their utility in helping plan, prioritize, and implement restoration actions. The major categories of assessment tools reviewed were: (1) life cycle and fish–habitat models, (2) watershed assessment methods and techniques, (3) reach assessments, (4) prioritization tools, and (5) common monitoring methods to identify, prioritize, and plan river and watershed restoration projects. We specifically indicated whether these assessment tools directly or indirectly assisted with the key steps in the restoration process that are required to develop successful restoration plans and projects. These steps involve assessing watershed conditions, identifying limiting habitats and life stages, identifying problems and restoration actions, selecting restoration techniques, prioritizing restoration actions, or designing actual restoration projects. It is important to recognize that no single assessment tool will address all the steps in the restoration process. Selecting appropriate assessment tools requires a clear understanding of the goals of the restoration program and which step in the restoration process will be addressed by a particular tool. We provide recommendations for how restoration practitioners and managers can use our review to help select the appropriate assessment tools needed for their watershed.

Roni, Philip↗

River Dissolved Oxygen Prediction Using Machine Learning Models and Wireless Sensor Measurements

Simultaneous flooding&heat and droughts&heat events can potentially destabilize hydro-meteorological conditions to deteriorate the water quality of Neches River. Machine learning (ML) models utilizing wireless sensor measurements have been applied to predict water quality and optimize various water management strategies. This study aims to develop ML models to predict dissolved oxygen (DO) prediction under various hydro-meteorological conditions and enhance water management decision-making. Wireless sensor measurements of DO, water temperature, sample depth, conductivity, turbidity, and pH, along with discharge from the United States Geological Survey stations, are collected for model inputs at the Pine Island Bayou C749 station (PIB-C749) and Neches River Saltwater Barrier (SWB). Multilayer perceptron neural networks, recurrent neural networks, long short-term memory (LSTM), and bidirectional LSTM (BiLSTM) with and without attention mechanism (AT) are tested to determine the best model, which is applied the rolling forecast method to predict 14-day DO. Traditional and recurrent transfer learning (TL and RTL) methods are adopted to overcome insufficient data at the SWB. The input feature importance analysis using the integrated gradients (IG) algorithm is applied to determine dominant inputs. The results show LSTM-based models are capable handling long sequential data. AT-BiLSTM and RTL-LSTM demonstrate the best performance at the PIB-C749 (RMSE=0.054) and the SWB (RMSE=0.028), respectively. TL and RTL methods significantly improve model performance at the SWB. DO, temperature, and pH show higher importance, consistent with hydrodynamics and water chemistry. Both best models are applied to predict 14-day DO and demonstrate reasonable performance for decision-making. Hydro-meteorological conditions of 2017 flood and 2012 drought events are simulated and reveal that possible hypoxia occurs after flooding due to increasing temperature and turbidity, and DO concentration decreases significantly under heat and drought conditions. In conclusion, LSTM-based models utilizing wireless sensor data can be a timely and effective approach to make appropriate decisions on water resource management.

54 ENVIRONMENTAL SCIENCES↗

Reliability Quantification of Advanced Stirling Convertor (ASC) Components

The Advanced Stirling Convertor, is intended to provide power for an unmanned planetary spacecraft and has an operational life requirement of 17 years. Over this 17 year mission, the ASC must provide power with desired performance and efficiency and require no corrective maintenance. Reliability demonstration testing for the ASC was found to be very limited due to schedule and resource constraints. Reliability demonstration must involve the application of analysis, system and component level testing, and simulation models, taken collectively. Therefore, computer simulation with limited test data verification is a viable approach to assess the reliability of ASC components. This approach is based on physics-of-failure mechanisms and involves the relationship among the design variables based on physics, mechanics, material behavior models, interaction of different components and their respective disciplines such as structures, materials, fluid, thermal, mechanical, electrical, etc. In addition, these models are based on the available test data, which can be updated, and analysis refined as more data and information becomes available. The failure mechanisms and causes of failure are included in the analysis, especially in light of the new information, in order to develop guidelines to improve design reliability and better operating controls to reduce the probability of failure. Quantified reliability assessment based on fundamental physical behavior of components and their relationship with other components has demonstrated itself to be a superior technique to conventional reliability approaches based on utilizing failure rates derived from similar equipment or simply expert judgment.

Shah, Ashwin R.↗

An experimental study on fish attraction using a fish barge model

Fish-collection and transportation systems (FCTS) have been introduced and applied as innovative approaches to facilitate fish passage in China for several years. The efficacy of FCTSs depends directly on the efficiency of the fish-guidance measures employed. In this study, the effects of three parameters—water flow, artificial lighting, and bubble curtains—on the attraction of mosquitofish ( Gambusia affinis ) was investigated using a fish barge model in a large pond. The experiment was conducted in two steps. First, a univariate experiment was performed, and then, a multivariate experiment using an orthogonal design was performed. Four different colors of light were tested: 1) yellow light (570 nm), 2) blue light (460 nm), 3) warm white light (3000 K), and 4) a weak light control group, whose illuminance belongs to the interval 0.001 lx to 0.3 lx. Supplementing water flow within the barge decreased the number of attracted fish (i.e., the number of the targeted fish species that appeared within 1.5m of the barge model’s entrance) but increased the fish-collection ratio of the fish-collecting platform (i.e., the ratio of the number of attracted fish to the number of collected fish). Warm white light was shown to be significantly effective in attracting fish, while no obvious effect was observed in terms of the fish collection ratio. The bubble curtain exhibited excellent fish-attraction efficacies, but also had no significant effect on the attraction and collection efficacy of the fish-collecting platform. During the day, the optimal combination for fish attraction was to have no water flow with a bubble curtain, while the optimal combination for fish collection was to have no water flow and no bubble curtain. During the night, the optimal combination for fish attraction was to have no water flow, no bubble curtain, and a warm white light, while the optimal combination for fish collection was to have water flow, no bubble curtain, and a weak light. This study tested the combined efficacies of various fish-guidance measures on a fish-collecting platform, thus providing experimental support for optimizing various fish-attraction measures and the application of these measures in FCTS projects.

Lin, Chenyu↗

Analysis of the 18 F g,m (d,p) 19 F reactions in the rotational model

Spectroscopic strengths for the 18 F g , m ( d , p ) F 19 reactions to members of the ground-state band in F 19 are interpreted in the rotational model. The analysis considers two different coupling schemes, namely, the strong and decoupled limits of the particle rotor model to describe the ground and isomeric states of F 18 , as well as the transitions to the ground-state band in F 19 . Our results, obtained using Nilsson amplitudes for the neutron levels 1 2 [ 220 ] , 3 2 [ 211 ] , and 5 2 [ 202 ] calculated at a deformation ε 2 = 0.32 are in agreement with the measurements and USDB shell-model calculations.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Predicting near-saturated hydraulic conductivity in urban soils

Pedotransfer functions (PTFs) provide point predictions of soil hydraulic properties from more readily measured soil characteristics, yet uncertainties and biases in measurement methods, sampling distributions, and boundary conditions can limit accuracy when estimating near-saturated hydraulic conductivity (K(n)). These limitations may be particularly problematic in understudied urban landscapes that often contain altered hydraulic properties. To better treat deficiencies in PTF performance, we addressed three objectives, which were to: 1) develop PTFs to predict urban K(n), 2) assess bulk density and coarse fragments as explanatory variables; and 3) evaluate the predictive capability of these PTFs by comparing their output to measured hydraulic conductivity values from three other studies of urban soil hydraulics. We used artificial neural networks (ANN) and random forest (RF) approaches to predict urban K(n), with the training dataset including 307 tension infiltrometer tests and other measurements drawn from urban soil assessments in 11 U.S. cities. The PTFs utilized a hierarchy of inputs, starting with percentage sand, silt, clay, and then adding percentage coarse fragments and bulk density. The ANN models performed similar to the RF models, and all models exhibited similar or better predictive performance as models results collected from published articles. The inclusion of bulk density or coarse fragments did not improve accuracy over soil texture alone. Possible reasons for this result include low correlation between K(n) and bulk density and the exclusion of large voids during flow measurements with tension infiltrometers. The models have been made available as an open-source software package to encourage adoption by users working in urban systems.

Jinshi Jian↗

IEA EBC Annex 66: Definition and simulation of occupant behavior in buildings

Here, more than 30% of the total primary energy in the world is consumed in buildings. It is crucial to reduce building energy consumption in order to preserve energy resources and mitigate global climate change. Building performance simulations have been widely used for the estimation and optimization of building performance, providing reference values for the assessment of building energy consumption and the effects of energy-saving technologies. Among the various factors influencing building energy consumption, occupant behavior has drawn increasing attention. Occupant behavior includes occupant presence, movement, and interaction with building energy devices and systems. However, there are gaps in occupant behavior modeling as different energy modelers have employed varied data and tools to simulate occupant behavior, therefore producing different and incomparable results. Aiming to address these gaps, the International Energy Agency (IEA) Energy in Buildings and Community (EBC) Programme Annex 66 has established a scientific methodological framework for occupant behavior research, including data collection, behavior model representation, modeling and evaluation approaches, and the integration of behavior modeling tools with building performance simulation programs. Annex 66 also includes case studies and application guidelines to assist in building design, operation, and policymaking, using interdisciplinary approaches to reduce energy use in buildings and improve occupant comfort and productivity. This paper highlights the key research issues, methods, and outcomes pertaining to Annex 66, and offers perspectives on future research needs to integrate occupant behavior with the building life cycle.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Evidence for Rigid Triaxial Deformation in Ge 76 from a Model-Independent Analysis

An extensive, model-independent analysis of the nature of triaxial deformation in 76 Ge, a candidate for neutrinoless double-beta (0νββ) decay, was carried out following multistep Coulomb excitation. Shape parameters deduced on the basis of a rotational-invariant sum-rule analysis provided considerable insight into the underlying collectivity of the ground-state and γ bands. Both sequences were determined to be characterized by the same β and γ deformation parameter values. In addition, compelling evidence for low-spin, rigid triaxial deformation in 76 Ge was obtained for the first time from the analysis of the statistical fluctuations of the quadrupole asymmetry deduced from the measured E 2 matrix elements. Furthermore, these newly determined shape parameters are important input and constraints for calculations aimed at providing, with suitable accuracy, the nuclear matrix elements relevant to 0νββ.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Non-Wiener Dynamics of Open Systems for Nonzero Number Density of Surrounding Photons

We propose a collective decay model for a localized ensemble of identical atoms in a vacuum broadband electromagnetic field with a nonzero photon number density considering second-order terms in the atom–field interaction constant. The model is based on the stochastic differential equation for the evolution operator for the atomic ensemble and surroundings, which is controlled by the main quantum random processes and independent classical Wiener processes. It is shown that in some cases, nonzero photon number density does not influence the suppression of collective emission of atoms, and its existence is manifested as an additional mechanism of redistribution of atoms over collective sublevels.

74 ATOMIC AND MOLECULAR PHYSICS↗

Multi Model Monte Carlo with Python (MXMCPy)

Multi Model Monte Carlo with Python (\mxmc {}) is a software package developed as a general capability for computing the statistics of outputs from an expensive, high-fidelity model by leveraging faster, low-fidelity models for speedup. Motivated by uncertainty propagation problems where classical Monte Carlo (MC) simulation is computationally intractable, various multi-model MC approaches have recently emerged that yield unbiased estimators with significantly reduced variance relative to MC for the same cost. These existing methods include multi-level Monte Carlo (MLMC), multi-fidelity Monte Carlo (MFMC), and approximate control variates (ACV). Given a fixed computational budget and a collection of models with varying cost/accuracy, each method seeks a sample allocation strategy across the models that results in an estimator with optimal variance reduction. \mxmc {} is a versatile tool that enables convenient access to many existing multi-model MC approaches within one modular and extensible package. With \mxmc {}, users can easily compare existing methods to determine the best choice for their particular problem, while developers have a basis for implementing and sharing new variance reduction approaches. This report introduces the \mxmc {} software, providing a summary of the problem-solving workflow for users as well as a brief overview of the code layout for developers.

Geoffrey F Bomarito↗

Development of formalisms based on locally coupled open subsystems for calculations in molecular electronic structure and dynamics

Quantum embedding theories model a collection of interacting molecules as a set of subsystems, where each can be treated with a particular electronic structure method (wave function or density functional theory, for example); these theories can lead to computationally efficient and accurate algorithms. Motivated by challenges in the field, we previously described a formalism (that models two subsystems), which we call “locally coupled open subsystems” (LCOS), for the computation of ground-state energies, fractional electron-occupation numbers of the subsystems, and the size-consistent limit of subsystem dissociation. In this work we present the full (nonrelativistic) LCOS theory and the following extensions of our previous work: (i) the framework to study systems composed of multiple subsystems and a procedure to spin-adapt the auxiliary wave function that describes the partitioned system, so that its spin state matches that of the real system of interest; (ii) potential functionals and ideas to employ machine learning for the computation of ground-state densities and energies; (iii) formulation of two LCOS ground-state approaches where the fragments are assigned Kohn-Sham wave functions; and (iv) a time-dependent (TD) extension of these two ground-state formalisms in which the state of the subsystems evolves according to a unitary propagation; from this evolution we can extract TD electron populations of the fragments, for instance. We also discuss potential applications of the TD LCOS theory to linear photoabsorption and Raman spectroscopy. As a result, the developments presented in this work can lead to ground-state and TD electronic structure calculations where the computational scaling can be controlled, depending on the level of theory and the accuracy desired to model each one of the subsystems and their coupling.

74 ATOMIC AND MOLECULAR PHYSICS↗

Atmospheric Composition Forecast Model Evaluation Using Ozone Measurements Collected by the Langley Mobile Ozone Lidar

The Langley Mobile Ozone Lidar (LMOL) is a mobile ground based lidar system based at NASA Langley in Hampton, Virginia. Between 2022 and 2024, LMOL collected over 2500 hours of ozone measurements for a range of different atmospheric conditions, including calm days, stratospheric intrusions, surface frontal passages, and long-range transported wildfire smoke plumes. Here, the data is used to evaluate the forecast accuracy of NASA’s Global GEOS Composition Forecasting (GEOS-CF) model. GEOS-CF makes daily three-dimensional forecasts of trace gases and aerosol species. Overall, for calm periods, the forecast model predicts lower tropospheric ozone at NASA Langley with reasonable accuracy (within 20%). The model best predicts the timing and extent of stratospheric intrusions but often vary in the magnitude of the ozone mixing ratio. Among the other types of atmospheric conditions, there is more variability in the model forecasts. Based on this analysis, model forecasts are utilized to determine future data acquisition opportunities with the goal of providing feedback to the modeling teams, thereby enabling them to better understand the model biases and improve the model forecasts of ozone during these different atmospheric conditions.

Daniel B Phoenix↗

Measuring and modeling diffuse scattering in protein X-ray crystallography

X-ray diffraction has the potential to provide rich information about the structural dynamics of macromolecules. To realize this potential, both Bragg scattering, which is currently used to derive macromolecular structures, and diffuse scattering, which reports on correlations in charge density variations, must be measured. Until now, measurement of diffuse scattering from protein crystals has been scarce because of the extra effort of collecting diffuse data. Here, we present 3D measurements of diffuse intensity collected from crystals of the enzymes cyclophilin A and trypsin. The measurements were obtained from the same X-ray diffraction images as the Bragg data, using best practices for standard data collection. To model the underlying dynamics in a practical way that could be used during structure refinement, we tested translation–libration–screw (TLS), liquid-like motions (LLM), and coarse-grained normal-modes (NM) models of protein motions. The LLM model provides a global picture of motions and was refined against the diffuse data, whereas the TLS and NM models provide more detailed and distinct descriptions of atom displacements, and only used information from the Bragg data. Whereas different TLS groupings yielded similar Bragg intensities, they yielded different diffuse intensities, none of which agreed well with the data. In contrast, both the LLM and NM models agreed substantially with the diffuse data. In conclusion, these results demonstrate a realistic path to increase the number of diffuse datasets available to the wider biosciences community and indicate that dynamics-inspired NM structural models can simultaneously agree with both Bragg and diffuse scattering.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Multiscale and multidimensional modeling of particle acceleration and transport in solar flares

Multi-messenger, multi-viewpoint, and time-resolved observations of solar flares are now providing unprecedented constraints on particle acceleration sites, energy conversion, and energy transport. The interpretation of current observations, including microwave imaging spectroscopy from EOVSA, hard x-ray (HXR) imaging from Solar Orbiter/STIX, gamma-ray diagnostics from Fermi, and in situ measurements from Parker Solar Probe and Solar Orbiter, collectively demands modeling frameworks that go beyond traditional spatially unresolved, one-zone models or single-mechanism descriptions. This review surveys multiscale and multidimensional modeling approaches, including kinetic, magnetohydrodynamic (MHD), and macroscopic particle models, that are being developed to meet the need. Kinetic simulations reveal that three-dimensional (3D) effects, including field-line chaos and self-generated turbulence, are essential for sustained power-law particle acceleration. MHD simulations now capture flux-rope eruptions, plasmoid-unstable current sheets, and turbulent flare regions in realistic magnetic topologies. Macroscopic models coupling MHD with energetic-particle models produce spatially resolved electron distributions and synthetic HXR and microwave emissions for direct comparison with observations. Despite these advances, outstanding challenges remain in bridging kinetic and global scales, improving MHD simulations and macroscopic particle models, and achieving quantitative model-observation closure.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

From Simulation to Reality With Random Noise

The challenging environment of autonomous vehicle (AV) navigation necessitates certain functions be performed by deep neural networks. Optimizing these models involves collecting vast quantities of domain-specific training data and ensuring that the dataset is representative of expected conditions. High-fidelity simulation plays a vital role in making this process feasible, allowing a wide range of scenarios to be explored at low cost. However, learning from simulation introduces subtle biases into models, which can degrade real-world performance in unpredictable ways. This effect can be mitigated with learning schemes specialized to bridge distributional shifts (transfer learning). Given the complex nature of these methods, the underlying models, and their environments, meaningfully evaluating performance is notstraight forward. Many unrelated factors can effect an improvement in generalization accuracy, but a full ablation analysis is often difficult. To tease out signal from noise, it is necessary to understand how transfer learning performance is affected by noise itself. The goals of this paper are (i) to establish a domain randomization baseline for a simple classification transfer learning task and (ii) to validate the RRAV testbed as a platform for further research in sim-to-real learning. We generate imagery from a simulation of NASA Ames Research Center and train a small convolutional neural network (ConvNet) to classify position relative to a centerline. Further models are trained with different types of noise progressively added to the data. The models are deployed aboard the on-site test vehicle to test real-world performance. In our experiments, we find that such naive domain randomization raises sim-to-real accuracy from 64% to 79%, while training directly on real data yields an 89% accuracy ceiling. These results suggest that the isolated mechanism of domain randomization can significantly improve generalization.

simulation↗

Towards a Robust Adaptive Digital Twin for Fusion Applications

The development of a digital twin system for fusion applications is essential for enhancing the prediction, analysis, and optimization of complex plasma processes. Machine learning (ML), particularly deep learning has demonstrated strong capabilities in modeling such highly nonlinear and intricate systems. However, two critical challenges limit the deployment of deep learning-based digital twins: Uncertainty Quantification (UQ) and data drift. UQ is vital for ensuring trustworthy predictions, especially in decision-support scenarios. Additionally, data-driven models are often sensitive to changes in the underlying data distribution, such as shot-to-shot variations in fusion experiments, which can lead to performance degradation over time. To address these challenges, we are developing an uncertainty-aware, adaptive digital twin framework. Our approach incorporates deep learning models enhanced with Gaussian Process approximations for predictive uncertainty estimation, coupled with an online learning mechanism that enables continuous model adaptation to new experimental data. This adaptive capability allows the data driven models to respond effectively to evolving plasma behaviors and equipment conditions. Specifically, to mitigate the effects of shot-to-shot drift, our system updates itself incrementally as new data becomes available, improving both robustness and fidelity. Our vision is to evolve this data driven model into a self-sustaining digital twin system that leverages UQ based feedback to continuously refine itself and potentially support real-time decision making. This presentation will cover a brief background on uncertainty quantification for ML, our ongoing effort on development of UQ capabilities for ML, our data science pipeline from data collection to model development and analysis and online learning framework for modeling coil deflection at DIII-D. I will also briefly touch upon opportunities and challenges in development of digital twin framework.

Sammuli, Brian [General Atomics]↗

Sensitivity of Marine Warm Cloud Retrieval Statistics to Algorithm Choices: Examples from MODIS Collection 6

The optical and microphysical structure of warm boundary layer marine clouds is of fundamental importance for understanding a variety of cloud radiation and precipitation processes. With the advent of MODIS (Moderate Resolution Imaging Spectroradiometer) on the NASA EOS Terra and Aqua platforms, simultaneous global/daily 1km retrievals of cloud optical thickness and effective particle size are provided, as well as the derived water path. In addition, the cloud product (MOD06/MYD06 for MODIS Terra and Aqua, respectively) provides separate effective radii results using the l.6, 2.1, and 3.7 ~m spectral channels. Cloud retrieval statistics are highly sensitive to how a pixel identified as being "notclear" by a cloud mask (e.g., the MOD35/MYD35 product) is determined to be useful for an optical retrieval based on a 1-D cloud model. The Collection 5 MODIS retrieval algorithm removed pixels associated with cloud'edges as well as ocean pixels with partly cloudy elements in the 250m MODIS cloud mask - part of the so-called Clear Sky Restoral (CSR) algorithm. Collection 6 attempts retrievals for those two pixel populations, but allows a user to isolate or filter out the populations via CSR pixel-level Quality Assessment (QA) assignments. In this paper, using the preliminary Collection 6 MOD06 product, we present global and regional statistical results of marine warm cloud retrieval sensitivities to the cloud edge and 250m partly cloudy pixel populations. As expected, retrievals for these pixels are generally consistent with a breakdown of the ID cloud model. While optical thickness for these suspect pixel populations may have some utility for radiative studies, the retrievals should be used with extreme caution for process and microphysical studies.

Platnick, Steven↗

Union of rotational and vibrational modes in generator-coordinate-type calculations, with application to neutrinoless double-β decay

Good many-body methods for medium and heavy nuclei are important. Here we combine rotational motion with vibrational modes in a novel generator-coordinate method (GCM): starting from a mean-field solution (Hartree-Fock-Bogoliubov), we create nonorthogonal reference states from low-lying quasiparticle Tamm-Dancoff modes, and then project onto states of good angular momentum and particle number. Here, the results we benchmark against full shell model calculations. Even with just a few such modes we find improvement over standard GCM calculations in excitation spectra. We also find significant improvement in 0νββ nuclear matrix elements.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗