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At least 271 records · Page 15

Crystal Structure of the Redox-Active Cofactor Dibromothymoquinone Bound to Circadian Clock Protein KaiA and Structural Basis for Dibromothymoquinone's Ability to Prevent Stimulation of KaiC Phosphorylation by KaiA

KaiA protein that stimulates KaiC phosphorylation in the cyanobacterial circadian clock was recently shown to be destabilized by dibromothymoquinone (DBMIB), thus revealing KaiA as a sensor of the plastoquinone (PQ) redox state and suggesting an indirect control of the clock by light through PQ redox changes. Here we show using X-ray crystallography that several DBMIBs are bound to KaiA dimer. Some binding modes are consistent with oligomerization of N-terminal KaiA pseudoreceiver domains and/or reduced interdomain flexibility. DBMIB bound to the C-terminal KaiA (C-KaiA) domain and limited stimulation of KaiC kinase activity by C-KaiA in the presence of DBMIB demonstrate that the cofactor may weakly inhibit KaiA-KaiC binding.

Pattanayek, Rekha↗

A crucial role for dynamic expression of components encoding the negative arm of the circadian clock

In the Neurospora circadian system, the White Collar Complex (WCC) drives expression of the principal circadian negative arm component frequency ( frq ). FRQ interacts with FRH (FRQ-interacting RNA helicase) and CKI, forming a stable complex that represses its own expression by inhibiting WCC. In this study, a genetic screen identified a gene, designated as brd-8 , that encodes a conserved auxiliary subunit of the NuA4 histone acetylation complex. Loss of brd-8 reduces H4 acetylation and RNA polymerase (Pol) II occupancy at frq and other known circadian genes, and leads to a long circadian period, delayed phase, and defective overt circadian output at some temperatures. In addition to strongly associating with the NuA4 histone acetyltransferase complex, BRD-8 is also found complexed with the transcription elongation regulator BYE-1. Expression of brd-8, bye-1, histone h2a.z , and several NuA4 subunits is controlled by the circadian clock, indicating that the molecular clock both regulates the basic chromatin status and is regulated by changes in chromatin. Taken together, our data identify auxiliary elements of the fungal NuA4 complex having homology to mammalian components, which along with conventional NuA4 subunits, are required for timely and dynamic frq expression and thereby a normal and persistent circadian rhythm.

59 BASIC BIOLOGICAL SCIENCES↗

Discovery of atomic clock-like spin defects in simple oxides from first principles

Virtually noiseless due to the scarcity of spinful nuclei in the lattice, simple oxides hold promise as hosts of solid-state spin qubits. However, no suitable spin defect has yet been found in these systems. Using high-throughput first-principles calculations, we predict spin defects in calcium oxide with electronic properties remarkably similar to those of the NV center in diamond. These defects are charged complexes where a dopant atom — Sb, Bi, or I — occupies the volume vacated by adjacent cation and anion vacancies. The predicted zero phonon line shows that the Bi complex emits in the telecommunication range, and the computed many-body energy levels suggest a viable optical cycle required for qubit initialization. Notably, the high-spin nucleus of each dopant strongly couples to the electron spin, leading to many controllable quantum levels and the emergence of atomic clock-like transitions that are well protected from environmental noise. Specifically, the Hanh-echo coherence time increases beyond seconds at the clock-like transition in the defect with 209 Bi. Our results pave the way to designing quantum states with long coherence times in simple oxides, making them attractive platforms for quantum technologies.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

A 9.2-GHz clock transition in a Lu(II) molecular spin qubit arising from a 3,467-MHz hyperfine interaction

Spins in molecules are particularly attractive targets for next-generation quantum technologies, enabling chemically programmable qubits and potential for scale-up via self-assembly. Here, we report observation of one of the largest hyperfine interactions for a molecular system, A iso = 3467±50 MHz, along with an associated clock transition of unprecedented magnitude. This is achieved through chemical control of the degree of s-orbital mixing into the spin-bearing d-orbital associated with a series of spin-½ La(II) and Lu(II) complexes. Increased s-orbital character reduces spin-orbit coupling and enhances the electron-nuclear Fermi contact interaction. Both outcomes are advantageous for quantum applications: the former reduces spin-lattice relaxation, while the latter maximizes the hyperfine interaction that, in turn, generates a 9 gigahertz clock transition, leading to an increase in phase memory time from 1.0±0.4 to 12±1 microseconds for one of the Lu(II) complexes. Furthermore, these findings suggest strategies for development of molecular quantum technologies, akin to trapped ion systems.

36 MATERIALS SCIENCE↗

Resonant X-ray excitation of the nuclear clock isomer 45 Sc

Resonant oscillators with stable frequencies and large quality factors help us to keep track of time with high precision. Examples range from quartz crystal oscillators in wristwatches to atomic oscillators in atomic clocks, which are, at present, our most precise time measurement devices. The search for more stable and convenient reference oscillators is continuing. Nuclear oscillators are better than atomic oscillators because of their naturally higher quality factors and higher resilience against external perturbations. One of the most promising cases is an ultra-narrow nuclear resonance transition in 45 Sc between the ground state and the 12.4-keV isomeric state with a long lifetime of 0.47 s (ref. 10 ). The scientific potential of 45 Sc was realized long ago, but applications require 45 Sc resonant excitation, which in turn requires accelerator-driven, high-brightness X-ray sources that have become available only recently. Here we report on resonant X-ray excitation of the 45 Sc isomeric state by irradiation of Sc-metal foil with 12.4-keV photon pulses from a state-of-the-art X-ray free-electron laser and subsequent detection of nuclear decay products. Simultaneously, the transition energy was determined as ${\mathrm{12,389.59}}_{+0.12\left({\rm{syst}}\right)}^{\pm 0.15\left({\rm{stat}}\right)}\,{\rm{eV}}$ with an uncertainty that is two orders of magnitude smaller than the previously known values. These advancements enable the application of this isomer in extreme metrology, nuclear clock technology, ultra-high-precision spectroscopy and similar applications.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Neutron radiation effects on linear CCDs at different clock pulse frequency

The experiments of reactor neutron radiation effects on linear CCDs are presented. The output voltage in dark field after neutron radiation are presented and compared at different clock pulse frequency. The degradation phenomena are analyzed in depth. The mean dark signal (K{sub D}) and dark signal non-uniformity (DSNU) versus neutron fluence is investigated at different clock pulse frequency. The degradation mechanisms of the dark signal and DSNU in linear CCDs are analyzed. The flux of the reactor neutron beams was about 1.33 × 10{sup 8} n/cm{sup 2}/s. The samples were exposed to 1MeV neutron-equivalent fluences of 1 × 10{sup 11}, 5 × 10{sup 11}, and 1 × 10{sup 12} n/cm{sup 2}, respectively.

36 MATERIALS SCIENCE↗

A compact ultranarrow high-power laser system for experiments with 578 nm ytterbium clock transition

In this paper, we present the realization of a compact, high-power laser system able to excite the ytterbium clock transition at 578 nm. Starting from an external-cavity laser based on a quantum dot chip at 1156 nm with an intra-cavity electro-optic modulator, we were able to obtain up to 60 mW of visible light at 578 nm via frequency doubling. The laser is locked with a 500 kHz bandwidth to an ultra-low-expansion glass cavity stabilized at its zero coefficient of thermal expansion temperature through an original thermal insulation and correction system. This laser allowed the observation of the clock transition in fermionic {sup 173}Y b with a <50 Hz linewidth over 5 min, limited only by a residual frequency drift of some 0.1 Hz/s.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

A high-overtone bulk acoustic wave resonator-oscillator-based 4.596 GHz frequency source: Application to a coherent population trapping Cs vapor cell atomic clock

This article reports on the design and characterization of a high-overtone bulk acoustic wave resonator (HBAR)-oscillator-based 4.596 GHz frequency source. A 2.298 GHz signal, generated by an oscillator constructed around a thermally controlled two-port aluminum nitride-sapphire HBAR resonator with a Q-factor of 24 000 at 68 °C, is frequency multiplied by 2–4.596 GHz, half of the Cs atom clock frequency. The temperature coefficient of frequency of the HBAR is measured to be −23 ppm/ °C at 2.298 GHz. The measured phase noise of the 4.596 GHz source is −105 dB rad{sup 2}/Hz at 1 kHz offset and −150 dB rad{sup 2}/Hz at 100 kHz offset. The 4.596 GHz output signal is used as a local oscillator in a laboratory-prototype Cs microcell-based coherent population trapping atomic clock. The signal is stabilized onto the atomic transition frequency by tuning finely a voltage-controlled phase shifter implemented in the 2.298 GHz HBAR-oscillator loop, preventing the need for a high-power-consuming direct digital synthesis. The short-term fractional frequency stability of the free-running oscillator is 1.8 × 10{sup −9} at one second integration time. In locked regime, the latter is improved in a preliminary proof-of-concept experiment at the level of 6.6 × 10{sup −11} τ{sup −1/2} up to a few seconds and found to be limited by the signal-to-noise ratio of the detected CPT resonance.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Nonlinear optical higher-order effects in an optical lattice clock

The development of optical frequency standards with a relative uncertainty of reproducing the time and frequency units at a level as low as 10{sup −17}–10{sup −18} calls for an unprecedented accuracy in estimating the role of higher orders of optical nonlinearity, caused by the influence of the optical lattice on the frequency shift of the ‘clock transition’. This paper presents a systematic calculation of the contributions of multipole nonlinear anharmonic effects to the error of clocks based on optical lattices for alkaline-earth-like Sr, Yb, and Hg atoms. (paper)

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Rabi spectroscopy of the clock transition in thulium atoms in a one-dimensional optical lattice

The clock transition at a wavelength of 1.14 μm in thulium atoms in an optical lattice in the Lamb – Dick regime is studied. The capture of thulium atoms makes it possible to suppress completely both the transition broadening due to the first-order Doppler effect and the shift of the transition frequency caused by the recoil effect. The excitation spectra of sideband oscillation frequencies and Rabi oscillations of population between the clock transition levels upon resonance excitation are investigated. (paper)

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Clocking out and letting go to unleash green biotech applications in a photosynthetic host

Cyanobacteria are photosynthetic bacteria whose gene expression patterns are globally regulated by their circadian (daily) clocks. Due to their ability to use sunlight as their energy source, they are also attractive hosts for “green” production of pharmaceuticals, renewable fuels, and chemicals. However, despite the application of traditional genetic tools such as the identification of strong promoters to enhance the expression of heterologous genes, cyanobacteria have lagged behind other microorganisms such as Escherichia coli and yeast as economically efficient cell factories. The previous approaches have ignored large-scale constraints within cyanobacterial metabolic networks on transcription, predominantly the pervasive control of gene expression by the circadian (daily) clock. Here, we show that reprogramming gene expression by releasing circadian repressor elements in the transcriptional regulatory pathways coupled with inactivation of the central oscillating mechanism enables a dramatic enhancement of expression in cyanobacteria of heterologous genes encoding both catalytically active enzymes and polypeptides of biomedical significance.

Science & Technology - Other Topics↗

The consistency condition for the three-point function in dissipative single-clock inflation

We generalize the consistency condition for the three-point function in single field inflation to the case of dissipative, multi-field, single-clock models. We use the recently introduced extension of the effective field theory of inflation that accounts for dissipative effects, to provide an explicit proof to leading (non-trivial) order in the generalized slow roll parameters and mixing with gravity scales. Our results illustrate the conditions necessary for the validity of the consistency relation in situations with many degrees of freedom relevant during inflation, namely that there is a preferred clock. Departures from this condition in forthcoming experiments would rule out not only single field but also a large class of multi-field models.

79 ASTRONOMY AND ASTROPHYSICS↗

An integer- N frequency synthesizer for flexible on-chip clock generation

A low-power integer-N frequency synthesizer for flexible on-chip clock generation has been designed in a 65 nm CMOS process. The circuit can be programmed to generate two independent low-jitter clocks between 30 MHz and 3 GHz that are locked to a 10–50 MHz reference input. The design uses a phase-locked loop (PLL) with a dual-tuned LC voltage-controlled oscillator (VCO), programmable feedback divider, and dual output dividers. The total power consumption from 1.2 V and 0.8 V supplies is 4.0 mW. In conclusion, experimental results confirm the functionality of the proposed synthesizer over a wide range of output frequencies.

47 OTHER INSTRUMENTATION↗

Optimized multiparty quantum clock synchronization

A multiparty protocol for distributed quantum clock synchronization has been claimed to provide universal limits on the clock accuracy, viz., that accuracy monotonically decreases with the number n of party members. But this is only true for synchronization when one limits oneself to W states. This work shows that the usage of Z (Symmetric Dicke) states, a generalization of W states, results in improved accuracy, having a maximum when Left-Floor n/2 Right-Floor of its members have their qubits with a |1> eigenstate.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Optimal coupling of Ho W 10 molecular magnets to superconducting circuits near spin clock transitions

A central goal in quantum technologies is to maximize GT 2 , where G stands for the coupling of a qubit to control and readout signals and T 2 is the qubit’s coherence time. Furthermore, this is challenging, as increasing G (e.g., by coupling the qubit more strongly to external stimuli) often leads to deleterious effects on T 2 . Here, we study the coupling of pure and magnetically diluted crystals of Ho W 10 magnetic clusters to microwave superconducting coplanar waveguides. Absorption lines give a broadband picture of the magnetic energy level scheme and, in particular, confirm the existence of level anticrossings at equidistant magnetic fields determined by the combination of crystal field and hyperfine interactions. Such “spin clock transitions” are known to shield the electronic spins against magnetic field fluctuations. The analysis of the microwave transmission shows that the spin-photon coupling also becomes maximum at these transitions. The results show that engineering spin-clock states of molecular systems offers a promising strategy to combine sizable spin-photon interactions with a sufficient isolation from unwanted magnetic noise sources.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Nonequilibrium renormalization group fixed points of the quantum clock chain and the quantum Potts chain

In this work, we derive an exact renormalization group recursion relation for the Loschmidt amplitude of the quantum Q-state clock model and the quantum Q-state Potts model in one dimension. The renormalization group flow is discussed in detail. The fixed points of the renormalization group flow are found to be complex in general. These fixed points control the dynamical phases of the two models, giving rise to nonanalyticities in its Loschmidt rate function, for both the pure and the disordered system. For the quench protocols studied, dynamical quantum phase transitions are found to occur in the clock model for all Qs considered, while in the Potts model, they only occur when Q < 4 .

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

One dimensional staggered bosons, clock models, and their noninvertible symmetries

We study systems of staggered boson Hamiltonians in a one dimensional lattice and in particular how the translation symmetry by one unit in these systems is in reality a noninvertible symmetry closely related to T-duality. We also study the simplest systems of clock models derived from these staggered boson Hamiltonians. We show that the noninvertible symmetries of these lattice models together with the discrete Z N symmetry predict that these are critical points with a U ( 1 ) current algebra at c = 1 and radius 2 N whenever N > 4 . We also present an independent computation of this value that arises directly from the staggered boson variables and does not use these additional symmetries. We also present a theoretical estimate of the values of critical coupling constants away from the self-dual symmetry point in these clock models. Published by the American Physical Society 2024

Astronomy & Astrophysics↗

Perturbative study of the one-dimensional quantum clock model

In this report we calculate the ground-state energy density ε(g) for the one-dimensional N-state quantum clock model up to order 18, where g is the coupling and N = 3,4,5,...,10, 20. Using methods based on the Padé approximation, we extract the singular structure of ε"(g) or ε(g). They correspond to the specific heat and free energy of the classical two-dimensional (2D) clock model. We find that, for N = 3, 4, there is a single critical point at g c = 1. The heat capacity exponent of the corresponding 2D classical model is α = 0.34 ± 0.01 for N = 3, and α = - 0.01 ± 0.01 for N = 4. For N > 4, there are two exponential singularities related by g c1 = 1/g c2 , and ε(g) behaves as Ae - $\frac{c}{|g_c -g|^a}$ + analytic terms near g c . The exponent σ gradually grows from 0.2 to 0.5 as N increases from 5 to 9, and it stabilizes at 0.5 when N > 9. The phase transitions exhibited in these models should be generalizations of the Kosterlitz-Thouless transition, which has σ = 0.5 .

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗