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At least 253 records · Page 14

Essential amino acids in the Plant-Conserved and Class-Specific Regions of cellulose synthases

The Plant-Conserved Region (P-CR) and the Class-Specific Region (CSR) are two plant-unique sequences in the catalytic core of cellulose synthases (CESAs) for which specific functions have not been established. Here, we used site-directed mutagenesis to replace amino acids and motifs within these sequences predicted to be essential for assembly and function of CESAs. We developed an in vivo method to determine the ability of mutated CesA1 transgenes to complement an Arabidopsis (Arabidopsis thaliana) temperature-sensitive root-swelling1 (rsw1) mutant. Replacement of a Cys residue in the CSR, which blocks dimerization in vitro, rendered the AtCesA1 transgene unable to complement the rsw1 mutation. Examination of the CSR sequences from 33 diverse angiosperm species showed domains of high-sequence conservation in a class-specific manner but with variation in the degrees of disorder, indicating a nonredundant role of the CSR structures in different CESA isoform classes. The Cys residue essential for dimerization was not always located in domains of intrinsic disorder. Expression of AtCesA1 transgene constructs, in which Pro417 and Arg453 were substituted for Ala or Lys in the coiled-coil of the P-CR, were also unable to complement the rsw1 mutation. Despite an expected role for Arg457 in trimerization of CESA proteins, AtCesA1 transgenes with Arg457Ala mutations were able to fully restore the wild-type phenotype in rsw1. Our data support that Cys662 within the CSR and Pro417 and Arg453 within the P-CR of Arabidopsis CESA1 are essential residues for functional synthase complex formation, but our data do not support a specific role for Arg457 in trimerization in native CESA complexes.

59 BASIC BIOLOGICAL SCIENCES↗

Electronic states dressed by an out-of-plane supermodulation in the quasi-two-dimensional kagome superconductor CsV 3 Sb 5

CsV 3 Sb 5 has attracted much recent attention as the first quasi-two-dimensional (2D) kagome superconductor. While the kagome layers are 2D in nature, increasing evidence has pointed to the importance of out-of-plane correlation in this material. However, it remains unclear whether such correlation can change the fundamental electronic structure of the quasi-2D system. Here, we reveal this missing piece of information, using angle-resolved photoemission spectroscopy, complemented by scanning tunneling microscope measurements. The three-dimensional electronic structures in the high-temperature state are revealed, which agree well with density-functional theory calculations. Electron energy bands are observed in the low-temperature state that exhibit additional periodicities along the out-of-plane momentum. Furthermore, these results reveal a direct response to the out-of-plane electronic supermodulation in the single-particle spectral function of CsV 3 Sb 5 , thus establishing an electronic platform to examine emergent phenomena beyond 2D limit in kagome superconductors.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Precipitation Trade Wind Cumuli within EUREC 4 A Field Campaign Report

The campaign Trades Cumuli Precipitation Initiation and Characterization (TCPIC) within the overarching Elucidating the Role of Clouds-Circulation Coupling in Climate EUREC 4 A campaign took place from 17 January 2020 to 20 February 2020, a total of 35 days. The campaign complemented the more extensive EUREC 4 A campaign focusing on cumulus clouds' role in the Earth's climate. TCPIC concentrated on understanding what triggers the onset and development of precipitation in trade wind cumulus clouds. The campaign requested the deployment of the U.S. Department of Energy Atmospheric Radiation Measurement (ARM) Mobile Facility (AMF) roll, pitch, and heave (RPH) stabilization platform to stabilize two radars on the Maria S. Merian research vessel (RV). The advanced remote-sensing techniques from stabilized radars characterized the entire precipitation life cycle, from the formation of larger cloud drops to precipitation evaporating on its way to the surface. Retrievals of evaporation rates, to track how rain affects the trade wind boundary layer, will be based on the zenith-pointing Doppler observations collected from the stabilized micro rain radar (MRR). Figure 1 shows the instrumentation's deployment on the RV: we installed the AMF RPH stabilization platform and the radars on the uppermost deck (peil deck) of the ship. For installing the devices, we coordinated a test phase of the equipment on the Maria S. Merian RV from 25 to 29 October 2019 in Emden harbor, Germany. In this testing phase, we set up all the connections, tested how to mount the W-band and the micro rain radars firmly on the table, and experimented with guided movements of the table to test the resistance of the whole system. Figure 1 shows the final tests conducted in Emden with the stable platform and the radars mounted.

54 ENVIRONMENTAL SCIENCES↗

On observers in holographic maps

A straightforward gravitational path integral calculation implies that closed universes are trivial, described by a one dimensional Hilbert space. Two recent papers by Harlow-Usatyuk-Zhao and Abdalla-Antonini-Iliesiu-Levine have sought to ameliorate this issue by defining special rules to incorporate observers into the path integral. However, the proposed rules are different, leading to differing results for the Hilbert space dimension. Moreover, the former work offers a holographic map realized using a non-isometric code construction to complement their path integral result and clarify its physics. In this work, we propose a non-isometric code that implements the second construction, allowing thorough comparison. Our prescription may be thought of as simply removing the portion of the map that acts on the observer, while preserving the rest, creating an effective holographic boundary at the observer-environment interface. This proposal can be directly applied to general holographic maps for both open and closed universes of any dimension.

AdS-CFT correspondence↗

Quantum many-body simulations of the two-dimensional Fermi-Hubbard model in ultracold optical lattices

Understanding quantum many-body states of correlated electrons is one main theme in modern condensed-matter physics. Given that the Fermi-Hubbard model, the prototype of correlated electrons, was recently realized in ultracold optical lattices, it is highly desirable to have controlled numerical methodology to provide precise finite-temperature results upon doping to directly compare with experiments. Here, we demonstrate the exponential tensor renormalization group (XTRG) algorithm [Chen et al., Phys. Rev. X 8, 031082 (2018)], complemented by independent determinant quantum Monte Carlo, offers a powerful combination of tools for this purpose. XTRG provides full and accurate access to the density matrix and thus various spin and charge correlations, down to an unprecedented low temperature of a few percent of the tunneling energy. Finally, we observe excellent agreement with ultracold fermion measurements at both half filling and finite doping, including the sign-reversal behavior in spin correlations due to formation of magnetic polarons, and the attractive hole-doublon and repulsive hole-hole pairs that are responsible for the peculiar bunching and antibunching behaviors of the antimoments.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Magnetic properties of the double trillium lattice antiferromagnet KBaCr 2 ⁢(PO 4 ) 3

Trillium lattices formed by corner-shared triangular units are the platform for magnetic frustration in three dimensions. Herein, we report structural and magnetic properties of the Cr-based (S = 3/2) double trillium lattice material KBaCr 2 ⁢(PO 4 ) 3 studied by x-ray diffraction, dc and ac magnetization, heat capacity, thermal conductivity, and 31 P nuclear magnetic resonance (NMR) measurements complemented by density-functional band-structure calculations. Magnetization, heat capacity, and 31 P NMR measurements reveal the magnetic transition at T N⁢1 ≃ 12.5 K in zero field followed by another transition (T N⁢2 ) at low temperatures in weak applied fields. The 31 P spin-lattice relaxation rate in the ordered state follows the T 3 behavior indicative of the two-magnon Raman process. Finally, the spin lattice of KBaCr 2 ⁢(PO 4 ) 3 comprises two crystallographically nonequivalent ferromagnetic sublattices that are coupled antiferromagnetically, thus eliminating frustration in this trillium network and leading to weak ferromagnetism in the vicinity of T N⁢1 .

36 MATERIALS SCIENCE↗

Quantitative texture analysis at the WAND 2 and HIDRA diffractometers

Data collection and analysis strategies have been developed for efficient and reliable crystallographic texture measurements at two recently upgraded neutron diffractometers: the Wide Angle Neutron Diffractometer Squared (WAND 2 ) and the High Intensity Diffractometer for Residual Stress Analysis (HIDRA) at the High Flux Isotope Reactor located at Oak Ridge National Laboratory. These methods are demonstrated using measurements on a variety of textured samples, including multi-phase steel composites and polycrystalline calcite (CaCO 3 ). Reference measurements were also made at VULCAN, the engineering diffractometer located at the Spallation Neutron Source. The texture data obtained on the different instruments are in agreement, and WAND 2 is more time efficient than HIDRA. Two analysis methods were investigated, single-peak fitting to obtain individual pole figures for inversion and Rietveld texture analysis using MAUD. Here, the impact of the differences between the various textures obtained was evaluated through the calculation of diffraction elastic constants, which is one application of the texture data collected. Both instruments were found to provide texture data that are suitable for complementing other analyses, such as residual stress mapping.

47 OTHER INSTRUMENTATION↗

Virtual Refrigerant Charge Sensing Method for Next-Generation Refrigerant in Residential Heat Pumps

The charge level of refrigerant in heat pump systems significantly affects their operational performance. Virtual refrigerant charge (VRC) sensing technology has been well-established for traditional refrigerants (HFCs and HCFCs) for its low cost compared to physical sensors. However, other than traditional refrigerants, HFOs are increasingly used in next-generation heat pumps; whether these conventional VRC sensing methods remain applicable for heat pump systems utilizing next-generation refrigerants requires further investigation. To address these issues, this study develops a low-cost VRC sensing method for next-generation refrigerant heat pumps used in residential buildings. The developed algorithm is evaluated by using simulation models to evaluate the accuracy, considering an R454B heat pump with a nominal heating capacity of 51K Btu/hr (14.95 kW) as an example, and compared with those of the two reference VRC sensing algorithms. Though the developed VRC sensing algorithm and the two reference methods can accurately predict the charge level for the R454B heat pump system (with mean absolute percentage error for various cooling and heating conditions less than 7%), the developed VRC sensing algorithm uses fewer sensors and improves the overall accuracy for heating conditions by 7.1%, and the accuracy for undercharge cooling conditions 14.2%, compared with a mainstream algorithm. This technology will complement physical leakage detectors, and promote the adoption of next-generation heat pump systems, along with reducing wasted energy and maintenance costs.

Liang, Chenjiyu↗

Tools for unbinned unfolding

Machine learning has enabled differential cross section measurements that are not discretized. Going beyond the traditional histogram-based paradigm, these unbinned unfolding methods are rapidly being integrated into experimental workflows. Here, in order to enable widespread adaptation and standardization, we develop methods, benchmarks, and software for unbinned unfolding. For methodology, we demonstrate the utility of boosted decision trees for unfolding with a relatively small number of high-level features. This complements state-of-the-art deep learning models capable of unfolding the full phase space. To benchmark unbinned unfolding methods, we develop an extension of existing dataset to include acceptance effects, a necessary challenge for real measurements. Additionally, we directly compare binned and unbinned methods using discretized inputs for the latter in order to control for the binning itself. Lastly, we have assembled two software packages for the OmniFold unbinned unfolding method that should serve as the starting point for any future analyses using this technique. One package is based on the widely-used RooUnfold framework and the other is a standalone package available through the Python Package Index (PyPI).

47 OTHER INSTRUMENTATION↗

Adaptive Fault Current-Limiting Control of MMC for Protection of Multiterminal HVDC Systems: Preprint

For the development of multi-terminal high voltage DC (MTDC) transmission, it is critical to design the protection system that can selectively isolate the faulty area from the healthy part of the dc grid using DC circuit breakers (DCCBs) while ensuring continuous operation of converter stations in the healthy part. However, because of the lack of fault current blocking capability in half-bridge (HB) modular multilevel converters (MMCs), when a dc fault occurs, the rising fault currents can quickly reach the blocking threshold within a few milliseconds and disrupt the operation of MMCs in the healthy part. Large DC reactors are often considered in series with DCCBs to reduce the rate of rise of fault currents and prevent blocking of MMCs in the healthy part of the grid. However, large DC reactors can prohibitively increase the cost of the system, particularly when they are considered in an offshore environment, for instance in offshore wind projects. Large dc reactors can also introduce stability issues and create post-fault oscillations. This paper presents an adaptive fault current limiting control method for MMCs to avoid their blocking and enable continuous operation of MTDC systems. It contains two parts: The first part is based on circulating current feedforward control that emulates virtual reactors in each arm of an MMC, which is immediately activated when the fault current starts to increase, to reduce the rate of rise of the fault current; the second part is triggered when the fault current exceeds a preset threshold by temporarily bypassing the SMs, serving as a complement to the fault current limiting effect of the first part. Both parts do not require fault detection signal and they are activated automatically during faults. Simulation case studies of a four-terminal bipolar MMC-HVDC system are presented to demonstrate the effectiveness of the proposed control methods.

active fault current limiting↗

Lignin-based jet fuel and its blending effect with conventional jet fuel

Sustainable aviation fuels (SAFs) must demonstrate specific physical and chemical properties as well as material compatibility (i.e., seal swell) to be used as an aviation turbine fuel. Several alternative jet fuels incorporated in ASTM D7566 are comprised mainly of n/iso-alkanes and can only be blended up to 50 vol% due to material compatibility and density issues. Prior work illustrated the ability of cycloalkanes to replace aromatics’s role in material compatibility. Here, we report the first archival documentation of a feedstock and chemical process to yield a product composition able to complement existing SAF ASTM D7566 annexes. A lignin-based jet fuel (LJF) blend components is generated and composed of mostly C7-C18 mono, di, and tri-cycloalkanes. The neat LJF was blended with conventional jet fuel at 10 vol% (LJF blend) to simulate an ASTM “Fast Track” evaluation process. Fuel properties that are critical to engine operability (ATSM D4054 Tier 3 & 4) were either predicted or experimental tested based on the volume availability. All LJF blend’s critical properties fall within the experience range of conventional jet fuel, with o-ring swelling exceeding the typical range of conventional fuels. Here, these results in total support the potential use of this LJF pathway to complement other SAF pathways and achieve 100% drop-in SAF.

09 BIOMASS FUELS↗

Combining field and remote sensing data to estimate forest canopy damage and recovery following tropical cyclones across tropical regions

Abstract As tropical forests cycle the most water and carbon, it is crucial to understand the short- and long-term effects of intensifying cyclones on these ecosystems. Soil nutrient status has been shown to moderate forest cyclone responses using field litterfall measurements, but litterfall is one of the multiple cyclone impact metrtics, which may or may not be correlated with one another or with site nutrients. We used remotely sensed vegetation indices to quantify immediate damage and two-year recovery for 42 cases across nine tropical forests in Hawaii, Puerto Rico, Mexico, Australia, and Taiwan affected by 12 cyclones between 2004 and 2017. We tested whether changes in leaf area index (LAI) and enhanced vegetation index (EVI) correlated with changes in litterfall observations and how changes varied with total soil phosphorus (P) concentrations across regions. We compared cyclone-induced changes and recovery of LAI and EVI to litterfall observations compiled in a pantropical meta-analysis. We found large variation in changes in LAI and EVI across forests, with the greatest reductions in LAI (−77%) and EVI (−77%) in Mexico (Jalisco) and Puerto Rico, respectively. LAI ( r = −0.52) and EVI ( r = −0.60) changes correlated with those in litterfall across cases. Post-cyclone data showed recovery of LAI by four months, EVI by two months, and litterfall by ten months. We detected larger changes in LAI and EVI in forests with higher soil P, but these relationships were not significant when accounting for cyclone and site as random effects. Principal component analyses indicated a regional clustering of cases related to their contrasting cyclone regimes, with the frequency and intensity of cyclone events negatively correlated. Overall, remote sensing observations complement but do not substitute for ground observations that reveal cyclone damage and post-cyclone recovery in tropical forests, and soil phosphorus moderates some but not all metrics of stability in response to cyclones.

Bloom, Dellena E. (ORCID:0000000205981747)↗

Bloch and Bethe Ansätze for the Harper model: A butterfly with a boundary

Based on a recent generalization of Bloch's theorem, herein we present a Bloch Ansatz for the Harper model with an arbitrary rational magnetic flux in various geometries, and solve the associated Ansatz equations analytically. In the case of a cylinder and a particular boundary condition, the energy spectrum of edge states has no dependence on the length of the cylinder, which allows us to construct a quasi-one-dimensional edge theory that is exact and describes two edges simultaneously. We prove that energies of bulk states, generating the so-called Hofstadter's butterfly, depend on a single geometry-dependent spectral parameter and have exactly the same functional form for the cylinder and the torus with general twisted boundary conditions, and argue that the (edge) bulk spectrum of a semi-infinite cylinder in an irrational magnetic field is (the complement of) a Cantor set. Finally, realizing that the bulk projection of the Harper Hamiltonian is a linear form over a deformed Weyl algebra, we introduce a Bethe Ansatz valid for both cylinder and torus geometries.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Locating Methyl-Etherified and Methyl-Esterified Uronic Acids in the Plant Cell Wall Pectic Polysaccharide Rhamnogalacturonan II

Rhamnogalacturonan II (RG-II) is a structurally complex pectic polysaccharide that exists as a borate ester cross-linked dimer in the cell walls of all vascular plants. The glycosyl sequence of RG-II is largely conserved, but there is evidence that galacturonic acid (GalA) methyl etherification and glucuronic acid (GlcA) methyl esterification vary in the A sidechain across plant species. Methyl esterification of the galacturonan backbone has also been reported but not confirmed. Here we describe a new procedure, utilizing aq. sodium borodeuteride (NaBD4)-reduced RG-II, to identify the methyl esterification status of backbone GalAs. Our data suggest that up to two different GalAs are esterified in the RG-II backbone. We also adapted a procedure based on methanolysis and NaBD4 reduction to identify 3-, 4-, and 3,4-O-methyl GalA in RG-II. These data, together with matrix-assisted laser desorption/ionization–time-of-flight mass spectrometry (MALDI-TOF) MS analysis of sidechain A generated from selected RG-IIs and their NaBD4-reduced counterparts, suggest that methyl etherification of the ß-linked GalA and methyl esterification of the GlcA are widespread. Nevertheless, the extent of these modifications varies between plant species. Our analysis of the sidechain B glycoforms in RG-II from different dicots and nonpoalean monocots suggests that this sidechain has a minimum structure of an O-acetylated hexasaccharide (Ara-[MeFuc]-Gal-AceA-Rha-Api-). To complement these studies, we provide further evidence showing that dimer formation and stability in vitro is cation and borate dependent. Taken together, our data further refine the primary sequence and sequence variation of RG-II and provide additional insight into dimer stability and factors controlling dimer self-assembly.

BASIC BIOLOGICAL SCIENCES↗

Fungal drops: a novel approach for macro- and microscopic analyses of fungal mycelial growth

Abstract This study presents an inexpensive approach for the macro- and microscopic observation of fungal mycelial growth. The ‘fungal drops’ method allows to investigate the development of a mycelial network in filamentous microorganisms at the colony and hyphal scales. A heterogeneous environment is created by depositing 15–20 µl drops on a hydrophobic surface at a fixed distance. This system is akin to a two-dimensional (2D) soil-like structure in which aqueous-pockets are intermixed with air-filled pores. The fungus (spores or mycelia) is inoculated into one of the drops, from which hyphal growth and exploration take place. Hyphal structures are assessed at different scales using stereoscopic and microscopic imaging. The former allows to evaluate the local response of regions within the colony (modular behaviour), while the latter can be used for fractal dimension analyses to describe the hyphal network architecture. The method was tested with several species to underpin the transferability to multiple species. In addition, two sets of experiments were carried out to demonstrate its use in fungal biology. First, mycelial reorganization of Fusarium oxysporum was assessed as a response to patches containing different nutrient concentrations. Second, the effect of interactions with the soil bacterium Pseudomonas putida on habitat colonization by the same fungus was assessed. This method appeared as fast and accessible, allowed for a high level of replication, and complements more complex experimental platforms. Coupled with image analysis, the fungal drops method provides new insights into the study of fungal modularity both macroscopically and at a single-hypha level.

Buffi, Matteo↗

Collective modes of excitation in 64 Cu

Medium and high-spin level sequences in 64 Cu were investigated using the complex 26 Mg( 48 Ca, αp5nγ ) multinucleon transfer reaction. The experiment was performed at the ATLAS accelerator facility at the Argonne National Laboratory using the Gammasphere array and the fragment mass analyzer (FMA). Two high-spin, quasirotational bands consisting of stretched-E2 transitions were observed in coincidence with the known low-spin structure for the first time. These bands share remarkable similarities with highly deformed and/or superdeformed bands observed in the A ≈ 60–70 mass region. In addition, a regular dipole sequence with weak E2 crossover transitions was observed. A general discussion of the observed structures, complemented by theoretical calculations carried out within the framework of the adiabatic and configuration-fixed constrained covariant density functional theory and the quantum particle-rotor model, are presented. Furthermore, the results are interpreted in the context of shell-structure evolution and the collectivity in the mass region.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Enhanced Magnetism and Anomalous Hall Transport through Two-Dimensional Tungsten Disulfide Interfaces

The magnetic proximity effect (MPE) has recently been explored to manipulate interfacial properties of two-dimensional (2D) transition metal dichalcogenide (TMD)/ferromagnet heterostructures for use in spintronics and valleytronics. However, a full understanding of the MPE and its temperature and magnetic field evolution in these systems is lacking. In this study, the MPE has been probed in Pt/WS 2 /BPIO (biphase iron oxide, Fe 3 O 4 and α-Fe 2 O 3 ) heterostructures through a comprehensive investigation of their magnetic and transport properties using magnetometry, four-probe resistivity, and anomalous Hall effect (AHE) measurements. Density functional theory (DFT) calculations are performed to complement the experimental findings. We found that the presence of monolayer WS 2 flakes reduces the magnetization of BPIO and hence the total magnetization of Pt/WS 2 /BPIO at T > ~120 K—the Verwey transition temperature of Fe 3 O 4 (T V ). However, an enhanced magnetization is achieved at T < T V . In the latter case, a comparative analysis of the transport properties of Pt/WS 2 /BPIO and Pt/BPIO from AHE measurements reveals ferromagnetic coupling at the WS 2 /BPIO interface. Our study forms the foundation for understanding MPE-mediated interfacial properties and paves a new pathway for designing 2D TMD/magnet heterostructures for applications in spintronics, opto-spincaloritronics, and valleytronics.

36 MATERIALS SCIENCE↗

Acarbose impairs gut Bacteroides growth by targeting intracellular glucosidases

ABSTRACT Acarbose is a type 2 diabetes medicine that prevents dietary starch breakdown into glucose by inhibiting host amylase and glucosidase enzymes. Numerous gut species in theBacteroidesgenus enzymatically break down starch and change in relative abundance within the gut microbiome in acarbose-treated individuals. To mechanistically explain this observation, we used two model starch-degradingBacteroides,Bacteroides ovatus(Bo), andBacteroides thetaiotaomicron(Bt). Bt growth on starch polysaccharides is severely impaired by acarbose, whereas Bo growth is much less affected by the drug. TheBacteroidesuse a starch utilization system (Sus) to grow on starch. We hypothesized that Bo and Bt Sus enzymes are differentially inhibited by acarbose. Instead, we discovered that although acarbose primarily targets the Sus periplasmic GH97 enzymes in both organisms, the drug affects starch processing at multiple other points. Acarbose competes for transport through the TonB-dependent SusC proteins and binds to the Sus transcriptional regulators. Furthermore, Bo expresses a non-Sus GH97 (BoGH97D) when grown in starch with acarbose. The Bt homolog, BtGH97H, is not expressed in the same conditions, nor can overexpression of BoGH97D complement the Bt growth inhibition in the presence of acarbose. This work informs us about unexpected complexities of Sus function and regulation inBacteroides, including variation between related species. Furthermore, this indicates that the gut microbiome may be a source of variable response to acarbose treatment for diabetes. IMPORTANCE Acarbose is a type 2 diabetes medication that works primarily by stopping starch breakdown into glucose in the small intestine. This is accomplished by the inhibition of host enzymes, leading to better blood sugar control via reduced ability to derive glucose from dietary starches. The drug and undigested starch travel to the large intestine where acarbose interferes with the ability of some bacteria to grow on starch. However, little is known about how gut bacteria interact with acarbose, including microbes that can use starch as a carbon source. Here, we show that two gut species,Bacteroides ovatus(Bo) andBacteroides thetaiotaomicron(Bt), respond differently to acarbose: Bt growth is inhibited by acarbose, while Bo growth is less affected. We reveal a complex set of mechanisms involving differences in starch import and sensing behind the different Bo and Bt responses. This indicates the gut microbiome may be a source of variable response to acarbose treatment for diabetes via complex mechanisms in common gut microbes.

Microbiology↗