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At least 253 records · Page 14

Metabolic Source Isotopic Pair Labeling and Genome-Wide Association Are Complementary Tools for the Identification of Metabolite-Gene Associations in Plants

The optimal extraction of information from untargeted metabolomics analyses is a continuing challenge. Here, we describe an approach that combines stable isotope labeling, liquid chromatography– mass spectrometry (LC–MS), and a computational pipeline to automatically identify metabolites produced from a selected metabolic precursor. Here, we identified the subset of the soluble metabolome generated from phenylalanine (Phe) in Arabidopsis thaliana, which we refer to as the Phe-derived metabolome (FDM) In addition to identifying Phe-derived metabolites present in a single wild-type reference accession, the FDM was established in nine enzymatic and regulatory mutants in the phenylpropanoid pathway. To identify genes associated with variation in Phe-derived metabolites in Arabidopsis, MS features collected by untargeted metabolite profiling of an Arabidopsis diversity panel were retrospectively annotated to the FDM and natural genetic variants responsible for differences in accumulation of FDM features were identified by genome-wide association. Large differences in Phe-derived metabolite accumulation and presence/absence variation of abundant metabolites were observed in the nine mutants as well as between accessions from the diversity panel. Many Phe-derived metabolites that accumulated in mutants also accumulated in non-Col-0 accessions and was associated to genes with known or suspected functions in the phenylpropanoid pathway as well as genes with no known functions. Overall, we show that cataloguing a biochemical pathway’s products through isotopic labeling across genetic variants can substantially contribute to the identification of metabolites and genes associated with their biosynthesis.

09 BIOMASS FUELS↗

Demonstration of neutron identification in neutrino interactions in the MicroBooNE liquid argon time projection chamber

A significant challenge in measurements of neutrino oscillations is reconstructing the incoming neutrino energies. While modern fully-active tracking calorimeters such as liquid argon time projection chambers in principle allow the measurement of all final state particles above some detection threshold, undetected neutrons remain a considerable source of missing energy with little to no data constraining their production rates and kinematics. We present the first demonstration of tagging neutrino-induced neutrons in liquid argon time projection chambers using secondary protons emitted from neutron-argon interactions in the MicroBooNE detector. We describe the method developed to identify neutrino-induced neutrons and demonstrate its performance using neutrons produced in muon-neutrino charged current interactions. The method is validated using a small subset of MicroBooNE’s total dataset. The selection yields a sample with 60% of selected tracks corresponding to neutron-induced secondary protons. At this purity, the integrated efficiency is 8.4% for neutrons that produce a detectable proton.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Detecting Neutrons in MicroBooNE

A significant challenge in measurements of neutrino oscillations is reconstructing the incoming neutrino energies. While modern fully-active tracking calorimeters such as liquid argon time projection chambers in principle allow the measurement of all final state particles above some detection threshold, undetected neutrons remain a considerable source of missing energy with little to no data constraining their production rates and kinematics. We present the first demonstration of tagging neutrino-induced neutrons in liquid argon time projection chambers using secondary protons emitted from neutron-argon interactions in the MicroBooNE detector. We describe the method developed to identify neutrino-induced neutrons and demonstrate its performance using neutrons produced in muon-neutrino charged current interactions. The method is validated using a small subset of MicroBooNE's total dataset. The selection yields a sample with $60\%$ of selected tracks corresponding to neutron-induced secondary protons.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Slug Test Characterization Results for the Upper Three Runs Aquifer at the Chemicals, Metals, and Pesticides Pits Operable Unit

Slug tests were performed on 21 wells screened within the Upper Three Runs aquifer (UTRA) at the Chemical, Metals, and Pesticide (CMP) Pits Operable Unit (OU) to determine unit-specific hydraulic properties. The UTRA is the water table aquifer at CMP Pits and is comprised of three discrete zones that are separated by two semi-continuous confining zones. These zones include the transmissive zone (TZ, unconfined), the middle aquifer zone (MAZ, semi-confined), and the lower aquifer zone (LAZ, semi-confined). The LAZ, the most substantial portion of the UTRA in the area, extends vertically to the green clay confining zone (GCCZ). A subset of wells from each zone was selected for slug testing. The objective of the project was to determine hydraulic properties of the three zones of the UTRA for use in future updates to the CMP pits groundwater flow and contaminant transport modeling.

54 ENVIRONMENTAL SCIENCES↗

AOIPS data base management systems support for GARP data sets

A data base management system is identified, developed to provide flexible access to data sets produced by GARP during its data systems tests. The content and coverage of the data base are defined and a computer-aided, interactive information storage and retrieval system, implemented to facilitate access to user specified data subsets, is described. The computer programs developed to provide the capability were implemented on the highly interactive, minicomputer-based AOIPS and are referred to as the data retrieval system (DRS). Implemented as a user interactive but menu guided system, the DRS permits users to inventory the data tape library and create duplicate or subset data sets based on a user selected window defined by time and latitude/longitude boundaries. The DRS permits users to select, display, or produce formatted hard copy of individual data items contained within the data records.

Gary, J. P.↗

The galaxy activity-interaction connection. I - Optical observations

As part of an investigation into the triggering of nuclear radio emission in interacting galaxies, new multicolor, broadband data are presented from a subset of Arp-Madore Catalog galaxies selected on the basis of their optical morphology - systems with loops and/or tails. The CTIO 4 m is used to obtain images in B, V, R, and I for the purpose of performing synthetic aperture photometry. Isophotal ellipse fitting to the more regular objects in the sample is also performed to quantify their isophotal deviation from purely elliptical morphologies. Color index maps for the galaxies are constructed, and the optical morphologies, broadband colors, and detailed photometric properties as well as the IRAS fluxes for the galaxies are discussed. These data are used to obtain a rough measure of the level of activity present in these systems.

Smith, Eric P.↗

Detecting Neutrons in MicroBooNE

A significant challenge in measurements of neutrino oscillations is reconstructing the incoming neutrino energies. While modern fully-active tracking calorimeters such as liquid argon time projection chambers in principle allow the measurement of all final state particles above some detection threshold, undetected neutrons remain a considerable source of missing energy with little to no data constraining their production rates and kinematics. We present the first demonstration of tagging neutrino-induced neutrons in liquid argon time projection chambers using secondary protons emitted from neutron-argon interactions in the MicroBooNE detector. We describe the method developed to identify neutrino-induced neutrons and demonstrate its performance using neutrons produced in muon-neutrino charged current interactions. The method is validated using a small subset of MicroBooNE's total dataset. The selection yields a sample with $60\%$ of selected tracks corresponding to neutron-induced secondary protons.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

ICARUS at the Short-Baseline Neutrino Program: First Results

First results from ICARUS experiment are presented at FNAL. The selection of nu_mu CC events with 1muon+ N Protons from BNB targeted at numu disappearance analysis is presented for a subset of the collected statistics, , compared with MC predictions. A similar selection of nu_mu CC events 1muon+ N Protons + 0 pions in the NuMI beam aiming at the neutrino-Argon cross section measurement is also presented, together with a control sideband requiring in addition at least a pion candidate. Finally the result of a BSM search for a new particle decaying into two muons is also presented, showing no evidence within the studied sample of new physics.

43 PARTICLE ACCELERATORS↗

Structural basis for receptor selectivity and inverse agonism in S1P5 receptors

This dataset contains a subset of raw diffraction images for the serial femtosecond crystallography data of S1P5-ONO-5430608 complex. The diffraction data contain a strong systematic background as described in Lyapina et al. No additional background subtraction was applied to the data. In order to avoid its effects, the background subtraction implemented in CrystFEL, was applied (--rings-grad subtraction). The final stream, supplemented with this dataset, was obtained with: indexamajig 0.8.0 Respectively, the hkl file was obtained with: partialator 0.8.0

Human sphingosine-1-phosphate receptor 5 (S1P5) in↗

System and method for progressive band selection for hyperspectral images

Disclosed herein are systems, methods, and non-transitory computer-readable storage media for progressive band selection for hyperspectral images. A system having module configured to control a processor to practice the method calculates a virtual dimensionality of a hyperspectral image having multiple bands to determine a quantity Q of how many bands are needed for a threshold level of information, ranks each band based on a statistical measure, selects Q bands from the multiple bands to generate a subset of bands based on the virtual dimensionality, and generates a reduced image based on the subset of bands. This approach can create reduced datasets of full hyperspectral images tailored for individual applications. The system uses a metric specific to a target application to rank the image bands, and then selects the most useful bands. The number of bands selected can be specified manually or calculated from the hyperspectral image's virtual dimensionality.

Fisher, Kevin↗

Consistency-Enhanced Evolution for Variable Selection Can Identify Key Chemical Information from Spectroscopic Data

In the last few decades, spectroscopic techniques such as near-infrared (NIR) spectroscopy have gained wide applications in several industries, such as the pharmaceutical, agricultural, oil, and gas industries. As a result, various soft sensors have been developed to predict sample properties from spectroscopic readings. Because the spectroscopic readings at different wavelengths, especially at the adjacent wavelengths, are highly correlated, it has been shown that variable selection could significantly improve a soft sensor’s prediction performance while reducing the model complexity. To improve the prediction performance, most variable selection methods focus on identifying the variables (i.e., wavelengths or wavelength segments) that are strongly correlated with the dependent variable. Although many successful applications have been reported, these variable selection methods do have their limitations. Specifically, the selected wavelengths sometimes show little connection to the chemical bounds or functional groups presenting in the sample. In addition, the selected variables can be quite sensitive to the choice of the training samples. In this work, we address these limitations from a different perspective: if a variable selection algorithm can identify the truly relevant input variables, it should consistently identify the same subset of variables regardless of the choice of the training samples. Therefore, we propose a variable selection method that aims to improve the consistency of variable selection resulting from different training samples. Furthermore, the new algorithm is termed consistency-enhanced evolution for variable selection (CEEVS). To demonstrate the performance and robustness of CEEVS, we compare the proposed method with three representative variable selection methods using five published NIR data sets. These case studies clearly demonstrate that by improving the variable selection consistency, we can not only achieve improved prediction performance, but also identify key chemical information from spectroscopic data.

42 ENGINEERING↗

ESS-DIVE File Level Metadata Extractor

The File-level Metadata (FLMD) parser is a lightweight python script that can produce a summary of fields based on column headers within a Comma-separated Values (CSV) file. The script enables a way to extract certain metadata fields from CSV data files. An optional configuration file can be used to select specific column headers to extract a smaller subset of values. The script can be used on a single file, or it can be given a directory to process groups of files in bulk. The FLMD parser outputs the metadata as a JSON and can be configured to updated the source file or produce an external companion file.

McNelis, Jack↗

Uranium Mass Attribute System (UMAS) Study: Evaluation of Options against the Arms Control Evaluation Criteria

In this FY19 study, a range of possible measurement systems for confirming a U-235 mass attribute were identified. The systems were reviewed for their applicability in a potential future arms control agreement, and a subset of the eight most plausible systems were selected for further evaluation against the Arms Control Evaluation Criteria (ACEC). The evaluation results were then used to identify a primary and secondary recommended measurement system for confirming a U-235 mass attribute on warheads, nuclear components of warheads, and/or materials as part of a hypothetical arms control agreement.

38 RADIATION CHEMISTRY, RADIOCHEMISTRY, AND NUCLEA↗

Uranium Mass Attribute System (UMAS) Study: Evaluation of Options Against the Arms Control Evaluation Criteria

In this study, eleven possible radiation and other non-destructive measurement systems for confirming U-235 mass attribute were identified. The systems were reviewed for their applicability in a potential future arms control agreement, and a subset of the eight most plausible systems were selected for futher evaluation against the Arms Control Evaluation Criteria (ACEC). The evaluation results were then used to identify a primary and secondary recommended UMAS for confirming a U-235 mass attribute on warheads, nuclear components of warheads, and/or materials as part of a hypothetical arms control agreement.

36 MATERIALS SCIENCE↗

Search for Ultra-high-energy Photons from Gravitational Wave Sources with the Pierre Auger Observatory

A search for time-directional coincidences of ultra-high-energy (UHE) photons above 10 EeV with gravitational wave (GW) events from the LIGO/Virgo runs O1 to O3 is conducted with the Pierre Auger Observatory. Due to the distinctive properties of photon interactions and to the background expected from hadronic showers, a subset of the most interesting GW events is selected based on their localization quality and distance. Time periods of 1000 s around and 1 day after the GW events are analyzed. No coincidences are observed. Upper limits on the UHE photon fluence from a GW event are derived that are typically at ~7 MeV cm -2 (time period 1000 s) and ~35 MeV cm -2 (time period 1 day). Due to the proximity of the binary neutron star merger GW170817, the energy of the source transferred into UHE photons above 40 EeV is constrained to be less than 20% of its total GW energy. These are the first limits on UHE photons from GW sources.

79 ASTRONOMY AND ASTROPHYSICS↗

A determination of the thick disk chemical abundance distribution: Implications for galaxy evolution

We present a determination of the thick disk iron abundance distribution obtained from an in situ sample of F/G stars. These stars are faint, 15 less than or approximately = V less than or approximately = 18, selected on the basis of color, being a subset of the larger survey of Gilmore and Wyse designed to determine the properties of the stellar populations several kiloparsecs from the Sun. The fields studied in the present paper probe the iron abundance distribution of the stellar populations of the galaxy at 500-3000 pc above the plane, at the solar Galactocentric distance. The derived chemical abundance distributions are consistent with no metallicity gradients in the thick disk over this range of vertical distance, and with an iron abundance distribution for the thick disk that has a peak at -0.7 dex. The lack of a vertical gradient argues against slow, dissipational settling as a mechanism for the formation of the thick disk. The photometric and metallicity data support a turn-off of the thick disk that is comparable in age to the metal-rich globular clusters, or greater than or approximately = 12 Gyr, and are consistent with a spread to older ages.

Gilmore, Gerard↗

The Athena Microscopic Imager Investigation

The Athena science payload on the Mars Exploration Rovers (MER) includes the Microscopic Imager (MI) [1]. The MI is a fixed-focus camera mounted on the end of an extendable instrument arm, the Instrument Deployment Device (IDD; see Figure 1).The MI was designed to acquire images at a spatial resolution of 30 microns/pixel over a broad spectral range (400 - 700 nm; see Table 1). Technically, the microscopic imager is not a microscope: it has a fixed magnification of 0.4 and is intended to produce images that simulate a geologist s view through a common hand lens. In photographers parlance, the system makes use of a macro lens. The MI uses the same electronics design as the other MER cameras [2, 3] but has optics that yield a field of view of 31 31 mm across a 1024 1024 pixel CCD image (Figure 2). The MI acquires images using only solar or skylightillumination of the target surface. A contact sensor is used to place the MI slightly closer to the target surface than its best focus distance (about 66 mm), allowing concave surfaces to be imaged in good focus. Because the MI has a relatively small depth of field (3 mm), a single MI image of a rough surface will contain both focused and unfocused areas. Coarse focusing will be achieved by moving the IDD away from a rock target after the contact sensor is activated. Multiple images taken at various distances will be acquired to ensure good focus on all parts of rough surfaces. By combining a set of images acquired in this way, a completely focused image can be assembled. Stereoscopic observations can be obtained by moving the MI laterally relative to its boresight. Estimates of the position and orientation of the MI for each acquired image will be stored in the rover computer and returned to Earth with the image data. The MI optics will be protected from the Martian environment by a retractable dust cover. The dust cover includes a Kapton window that is tinted orange to restrict the spectral bandpass to 500-700 nm, allowing color information to be obtained by taking images with the dust cover open and closed. The MI will image the same materials measured by other Athena instruments (including surfaces prepared by the Rock Abrasion Tool), as well as rock and soil targets of opportunity. Subsets of the full image array can be selected and/or pixels can be binned to reduce data volume. Image compression will be used to maximize the information contained in the data returned to Earth. The resulting MI data will place other MER instrument data in context and aid in petrologic and geologic interpretations of rocks and soils on Mars.

K E Herkenhoff↗

Identification of Technologies for Provision of Future Aeronautical Communications

This report describes the process, findings, and recommendations of the second of three phases of the Future Communications Study (FCS) technology investigation conducted by NASA Glenn Research Center and ITT Advanced Engineering & Sciences Division for the Federal Aviation Administration (FAA). The FCS is a collaborative research effort between the FAA and Eurocontrol to address frequency congestion and spectrum depletion for safety critical airground communications. The goal of the technology investigation is to identify technologies that can support the longterm aeronautical mobile communication operating concept. A derived set of evaluation criteria traceable to the operating concept document is presented. An adaptation of the analytical hierarchy process is described and recommended for selecting candidates for detailed evaluation. Evaluations of a subset of technologies brought forward from the prescreening process are provided. Five of those are identified as candidates with the highest potential for continental airspace solutions in L-band (P-34, W-CDMA, LDL, B-VHF, and E-TDMA). Additional technologies are identified as best performers in the unique environments of remote/oceanic airspace in the satellite bands (Inmarsat SBB and a custom satellite solution) and the airport flight domain in C-band (802.16e). Details of the evaluation criteria, channel models, and the technology evaluations are provided in appendixes.

Gilbert, Tricia↗