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At least 253 records · Page 14

Nucleobases and Prebiotic Molecules in Organic Residues Produced from the Ultraviolet Photo-Irradiation of Pyrimidine in NH3 and H2O+NH3 Ices

Although not yet identified in the interstellar medium (ISM), N-heterocycles including nucleobases the information subunits of DNA and RNA are present in carbonaceous chondrites, which indicates that molecules of biological interest can be formed in non-terrestrial environments via abiotic pathways. Recent laboratory experiments and ab-initio calculations have already shown that the irradiation of pyrimidine in pure H2O ices leads to the formation of a suite of oxidized pyrimidine derivatives, including the nucleobase uracil. In the present work, NH3:pyrimidine and H2O:NH3:pyrimidine ice mixtures with different relative proportions were irradiated with UV photons under astrophysically relevant conditions. Liquid- and gas-chromatography analysis of the resulting organic residues has led to the detection of the nucleobases uracil and cytosine, as well as other species of prebiotic interest such as urea and small amino acids. The presence of these molecules in organic residues formed under abiotic conditions supports scenarios in which extraterrestrial organics that formed in space and were subsequently delivered to telluric planets via comets and meteorites could have contributed to the inventory of molecules that triggered the first biological reactions on their surfaces.

Nuevo, Michel↗

Complex Organic Molecules in Star-Forming Regions of the Magellanic Clouds

The Large and Small Magellanic Clouds (LMC and SMC), gas-rich dwarf companions of the Milky Way, are the nearest laboratories for detailed studies on the formation and survival of complex organic molecules (COMs) under metal poor conditions. To date, only methanol, methyl formate, and dimethyl ether have been detected in these galaxies – all three toward two hot cores in the N113 star-forming region in the LMC, the only extragalactic sources exhibiting complex hot core chemistry. We describe a small and diverse sample of the LMC and SMC sources associated with COMs or hot core chemistry, and compare the observations to theoretical model predictions. Theoretical models accounting for the physical conditions and metallicity of hot molecular cores in the Magellanic Clouds have been able to broadly account for the existing observations, but fail to reproduce the dimethyl ether abundance by more than an order of magnitude. We discuss future prospects for research in the field of complex chemistry in the low-metallicity environment. The detection of COMs in the Magellanic Clouds has important implications for astrobiology. The metallicity of the Magellanic Clouds is similar to galaxies in the earlier epochs of the Universe, thus the presence of COMs in the LMC and SMC indicates that a similar prebiotic chemistry leading to the emergence of life, as it happened on Earth, is possible in low-metallicity systems in the earlier Universe.

Magellanic Clouds, star formation, astrochemistry,↗

Probing the Evolutionary History of Comets: an Investigation of the Hypervolatiles CO, CH4, and C2H6 in the Jupiter-Family Comet 21P/Giacobini–Zinner

Understanding the cosmogonic record encoded in the parent volatiles stored in cometary nuclei requires investigating whether evolution (thermal or otherwise) has modified the composition of short-period comets during successive perihelion passages. As the most volatile molecules systematically observed in comets, the abundances of CO, CH4, and C2H6 in short-period comets may serve to elucidate the interplay between natal conditions and post-formative evolution in setting present-day composition, yet secure measurements of CO and CH4 in Jupiter-family comets (JFCs) are especially sparse. The highly favorable 2018 apparition of JFC 21P/Giacobini–Zinner enabled a sensitive search for these "hypervolatiles" in a prototypical carbon-chain depleted comet. We observed 21P/Giacobini–Zinner with the iSHELL spectrograph at the NASA Infrared Telescope Facility on four pre-perihelion dates, two dates near-perihelion, and one post-perihelion date. We obtained detections of CO, CH4, and C2H6 simultaneously with H2O on multiple dates. We present rotational temperatures, production rates, and mixing ratios. Combined with previous work, our results may indicate that the hypervolatile coma composition of 21P/Giacobini–Zinner was variable across apparitions as well as within a particular perihelion passage, yet the spread in these measurements is a relatively small fraction of the variation in each molecule from comet to comet. We discuss the implications of our measured hypervolatile content of 21P/Giacobini–Zinner for the evolution of JFCs, and place our results in the context of findings from the Rosetta mission and ground-based studies of comets.

Roth, Nathan X.↗

Dissociative recombination of CH+ ions.

In recent studies of the formation of molecules in interstellar clouds, Solomon and Klemperer (1972) and Frisch (1972) were able to fit the observed ratios of CH+ and CH densities only with the assumption that the rate of dissociative recombination is extremely small. It is known that the rate for most diatomic molecules is relatively large, with the exception of H2+ and He2+ for which it is anomalously small. The present work explores the possibility that CH+ also has a low recombination rate. However, preliminary calculations yield a large rate of the dissociative recombination process, seemingly necessitating considerable revision of some recent models of interstellar clouds.

Bardsley, J. N.↗

Is the Lamb shift chemically significant?

The contribution of the Lamb shift to the atomization energies of some prototype molecules, BF3, AlF3, and GaF3, is estimated by a perturbation procedure. It is found to be in the range of 3-5% of the one-electron scalar relativistic contribution to the atomization energy. The maximum absolute value is 0.2 kcal/mol for GaF3. These sample calculations indicate that the Lamb shift is probably small enough to be neglected for energetics of molecules containing light atoms if the target accuracy is 1 kcal/mol, but for higher accuracy calculations and for molecules containing heavy elements it must be considered.

Dyall, Kenneth G.↗

Doppler broadening effect on collision cross section functions - Deconvolution of the thermal averaging

The surprising feature of the Doppler problem in threshold determination is the 'amplification effect' of the target's thermal energy spread. The small thermal energy spread of the target molecules results in a large dispersion in relative kinetic energy. The Doppler broadening effect in connection with thermal energy beam experiments is discussed, and a procedure is recommended for the deconvolution of molecular scattering cross-section functions whose dominant dependence upon relative velocity is approximately that of the standard low-energy form.

Bernstein, R. B.↗

Sodium D-line emission in Comet West /1975n/ and the sodium source in comets

A spectrum of the sodium D-line emission from Comet West (1975n) taken at heliocentric distance 1.4 AU is analyzed by comparing the D-line brightness to that in the underlying continuum. Using the observations of this comet by Ney and Merrill, it is found that the dust grains which dominate the visible and infrared continua are too cool to provide the observed sodium atoms through evaporation of sodium metal or a sodium compound from grain surfaces. Though sodium metal may evaporate from a small-grain component, it is suggested that molecules embedded in the volatile nuclear matrix are a more plausible source of sodium. The relationship between this source and the interstellar sodium abundance is discussed.

Oppenheimer, M.↗

Pulsed, gridded electron reversal ionizer

The design and performance of a new-type source of negative ions is presented. This device retains the idea of the so-called reversal electron attachment detector to produce low-energy electrons by reversing electron trajectories at an electrode. Electrons are produced in the present device by several ribbon filaments that surround a cylindrical wire grid. They are accelerated through the grid, then decelerated to zero or near-zero velocity at the surface of a tube. The tube (anode) is perforated with small holes through which effuse the target molecules. Electrons attach to form either parent and/or fragment negative ions. Attachment takes place at a location above the anode corresponding to a match between the electron energy and the attachment resonance energy. Negative ions are pulsed out of the attachment region and focused onto the entrance plane of a quadrupole mass selector. Electron and ion trajectory calculations are presented and the performance illustrated with six molecules having attachment resonances in the range 0.0-2.2 eV. The detection sensitivity is below 1 part-per-trillion, with a calculated conversion rate of 1.3 percent. Signal nonlinearity is discussed in terms of ion space-charge effects. The device also produces positive ions, and an analogous treatment may be carried through to characterize its performance in this mode.

Boumsellek, S.↗

Intracellular stress tomography reveals stress focusing and structural anisotropy in cytoskeleton of living cells

We describe a novel synchronous detection approach to map the transmission of mechanical stresses within the cytoplasm of an adherent cell. Using fluorescent protein-labeled mitochondria or cytoskeletal components as fiducial markers, we measured displacements and computed stresses in the cytoskeleton of a living cell plated on extracellular matrix molecules that arise in response to a small, external localized oscillatory load applied to transmembrane receptors on the apical cell surface. Induced synchronous displacements, stresses, and phase lags were found to be concentrated at sites quite remote from the localized load and were modulated by the preexisting tensile stress (prestress) in the cytoskeleton. Stresses applied at the apical surface also resulted in displacements of focal adhesion sites at the cell base. Cytoskeletal anisotropy was revealed by differential phase lags in X vs. Y directions. Displacements and stresses in the cytoskeleton of a cell plated on poly-L-lysine decayed quickly and were not concentrated at remote sites. These data indicate that mechanical forces are transferred across discrete cytoskeletal elements over long distances through the cytoplasm in the living adherent cell.

NASA Discipline Cell Biology↗

Stochastic Effects in Computational Biology of Space Radiation Cancer Risk

Estimating risk from space radiation poses important questions on the radiobiology of protons and heavy ions. We are considering systems biology models to study radiation induced repair foci (RIRF) at low doses, in which less than one-track on average transverses the cell, and the subsequent DNA damage processing and signal transduction events. Computational approaches for describing protein regulatory networks coupled to DNA and oxidative damage sites include systems of differential equations, stochastic equations, and Monte-Carlo simulations. We review recent developments in the mathematical description of protein regulatory networks and possible approaches to radiation effects simulation. These include robustness, which states that regulatory networks maintain their functions against external and internal perturbations due to compensating properties of redundancy and molecular feedback controls, and modularity, which leads to general theorems for considering molecules that interact through a regulatory mechanism without exchange of matter leading to a block diagonal reduction of the connecting pathways. Identifying rate-limiting steps, robustness, and modularity in pathways perturbed by radiation damage are shown to be valid techniques for reducing large molecular systems to realistic computer simulations. Other techniques studied are the use of steady-state analysis, and the introduction of composite molecules or rate-constants to represent small collections of reactants. Applications of these techniques to describe spatial and temporal distributions of RIRF and cell populations following low dose irradiation are described.

Cucinotta, Francis A.↗

The Chemistry of Extragalactic Carbon Stars

Prompted by the ongoing interest in Spitzer Infrared Spectrometer spectra of carbon stars in the Large Magellanic Cloud, we have investigated the circumstellar chemistry of carbon stars in low-metallicity environments. Consistent with observations, our models show that acetylene is particularly abundant in the inner regions of low metallicity carbon-rich asymptotic giant branch stars - more abundant than carbon monoxide. As a consequence, larger hydrocarbons have higher abundances at the metallicities of the Magellanic Clouds than in stars with solar metallicity. We also find that the oxygen and nitrogen chemistry is suppressed at lower metallicity, as expected. Finally, we calculate molecular line emission from carbon stars in the Large and Small Magellanic Cloud and find that several molecules should be readily detectable with the Atacama Large Millimeter Array at Full Science operations.

carbon↗

Complex Organic Molecules in the Star-Forming Regions of the Magellanic Clouds

The Large and Small Magellanic Clouds (LMC and SMC), gas-rich dwarf companions of the Milky Way, are the nearest laboratories for detailed studies on the formation and survival of complex organic molecules (COMs) under metal-poor conditions. To date, only methanol, methyl formate, and dimethyl ether have been detected in these galaxiesall three toward two hot cores in the N113 star-forming region in the LMC, the only extragalactic sources exhibiting complex hot-core chemistry. We describe a small and diverse sample of the LMC and SMC sources associated with COMs or hot-core chemistry, and compare the observations to theoretical model predictions. Theoretical models accounting for the physical conditions and metallicity of hot molecular cores in the Magellanic Clouds have been able to broadly account for the existing observations, but they fail to reproduce the dimethyl ether abundance by more than an order of magnitude. We discuss future prospects for research in the eld of complex chemistry in the low- metallicity environment. The detection of COMs in the Magellanic Clouds has important implications for astrobiology. The metallicity of the Magellanic Clouds is similar to that of galaxies in the earlier epochs of the universe; thus, the presence of COMs in the LMC and SMC indicates that a similar prebiotic chemistry leading to the emergence of life, as it happened on Earth, is possible in low-metallicity systems in the earlier universe.

Sewilo, Marta M.↗

Analysis of Mars Analogue Soil Samples Using Solid-Phase Microextraction, Organic Solvent Extraction and Gas Chromatography/Mass Spectrometry

Polycyclic aromatic hydrocarbons (PAHs) are robust and abundant molecules in extraterrestrial environments. They are found ubiquitously in the interstellar medium and have been identified in extracts of meteorites collected on Earth. PAHs are important target molecules for planetary exploration missions that investigate the organic inventory of planets, moons and small bodies. This study is part of an interdisciplinary preparation phase to search for organic molecules and life on Mars. We have investigated PAH compounds in desert soils to determine their composition, distribution and stability. Soil samples (Mars analogue soils) were collected at desert areas of Utah in the vicinity of the Mars Desert Research Station (MDRS), in the Arequipa region in Peru and from the Jutland region of Denmark. The aim of this study was to optimize the solid-phase microextraction (SPME) method for fast screening and determination of PAHs in soil samples. This method minimizes sample handling and preserves the chemical integrity of the sample. Complementary liquid extraction was used to obtain information on five- and six-ring PAH compounds. The measured concentrations of PAHs are, in general, very low, ranging from 1 to 60 ng g(sup -1). The texture of soils is mostly sandy loam with few samples being 100% silt. Collected soils are moderately basic with pH values of 8-9 except for the Salten Skov soil, which is slightly acidic. Although the diverse and variable microbial populations of the samples at the sample sites might have affected the levels and variety of PAHs detected, SPME appears to be a rapid, viable field sampling technique with implications for use on planetary missions.

Orzechowska, G. E.↗

Raman-shifting an ArF excimer laser to generate new lines for obtaining optical diagnostic based information in flow fields

The application of tunable excimer lasers in combustion and flow diagnostics is almost routine nowadays. The properties of this laser system that enable density and temperature measurements in supersonic and hypersonic flow fields to be conducted are its high power, high repetition rate, and high spectral brightness. The limitation imposed by this system on these measurements is the paucity of lines in the wavelength region, the vacuum-ultraviolet, where species of interest, such as OH, N2, O2, H2, H2O, CO, NO, etc., are susceptible to electronic excitation to high-lying states. To circumvent this problem one normally resorts to nonlinear optical techniques such as frequency conversion via stimulated Raman scattering (SRS), more commonly known as Raman shifting or Raman mixing, to extend these nonintrusive and nonperturbing techniques to the shorter wavelengths in the VUV region and, for that matter, to longer wavelengths in the infrared region, if the need arises. The theoretical basis of SRS and its application are well documented in the literature. In essence, the Raman shift is a consequence of the inelastic scattering of the incident radiation by the sample. Most of the scattered radiation from the molecules of the sample is unchanged in frequency. However, a small fraction of the incident radiation is changed in frequency. This shift is a result of the fact that some of the incident photons on colliding with the molecules of the sample give up some of their energy and emerge with a lower energy resulting in the lower-frequency Stokes radiation. Other incident photons may increase their energy by colliding with the vibrationally excited molecules of the medium and emerge as higher-frequency antistokes radiation. The generation of the latter is the main objective of this project. The process, however, depends on several factors, including the beam quality of the pump laser, the cross-section of the gaseous medium, the gas pressure, and the ambient temperature of the gas near the focal region. Furthermore, since the Raman shifting process is polarization sensitive, it is necessary to have all of the laser energy in a single polarization. These factors were taken into consideration in the execution of the project. The implementation of the Raman shift was accomplished by focusing the 193 nm output of an ArF excimer laser (Lamda-Physik LPX 150) into a 1-meter long high pressure recirculating Raman cell filled with H2 gas. The laser system was modified in order to improve the mode quality of the pump beam to enhance the Raman shifting. To accomplish this feat, a prism beam expander and grating on the oscillator discharge provided wavelength tuning over the excimer gain profile. Furthermore, a triple-pass configuration, as opposed to unstable resonator optics, was employed in the operation of the amplifier cavity so that when the oscillator output radiation, focused by a 51-cm focal length fused silica lens through a 50 micron pinhole (serving as a spatial filter) and recollimated with a 25-cm focal length lens, was fed into the amplifier, it was injection locked, thereby providing tunable radiation with relatively low divergence. The forward scattered radiation emanating from the impingement of the modified pump beam on the Raman cell was detected using an energy meter after the latter had been separated from it using a dispersing prism.

Koker, Edmond B.↗

Chemically frozen multicomponent boundary layer theory of salt and/or ash deposition rates from combustion gases

There is increased interest in, and concern about, deposition and corrosion phenomena in combustion systems containing inorganic condensible vapors and particles (salts, ash). To meet the need for a computationally tractable deposition rate theory general enough to embrace multielement/component situations of current and future gas turbine and magnetogasdynamic interest, a multicomponent chemically 'frozen' boundary layer (CFBL) deposition theory is presented and its applicability to the special case of Na2SO4 deposition from seeded laboratory burner combustion products is demonstrated. The coupled effects of Fick (concentration) diffusion and Soret (thermal) diffusion are included, along with explicit corrections for effects of variable properties and free stream turbulence. The present formulation is sufficiently general to include the transport of particles provided they are small enough to be formally treated as heavy molecules. Quantitative criteria developed to delineate the domain of validity of CFBL-rate theory suggest considerable practical promise for the present framework, which is characterized by relatively modest demands for new input information and computer time.

Rosner, D. E.↗

Compact Ion Source for Mass Spectrometers

Cyclotron-resonance device uses miniature components and permanent magnet for small size, low weight, and low cost. Gas molecules are ionized by electrons from hot filament. Magnetic field, acting with electrostatic drift field, causes ions to move in circles with a superimposed drift perpendicular to both fields, toward the exit. Compact source can be used for studying ion-molecule reactions by ion cyclotron-resonance methods in conventional mass spectrometer with either magnetic sector or quadrupole sector.

Anicich, V. G.↗

Comparison of the Brueckner and coupled-cluster approaches to electron correlation

The coupled-cluster and Brueckner electron correlation methods are used to determine the equilibrium structures, dipole moments, harmonic vibrational frequencies, and IR intensities of NH3, FON, Be3, BeC2, and BeO2. The singles and doubles coupled-cluster and Brueckner doubles methods are employed, and the corresponding methods that include a perturbational estimate of connected triple excitations are also investigated. The T sub 1 diagnostic is found to provide a good indication of the magnitude of the difference between the results obtained with the coupled-cluster and Brueckner methods. For NH3, the T sub 1 diagnostic is small and so the differences between results obtained from coupled-cluster and Brueckner theories are quite small. It is found for all of the molecules under consideration that inclusion of the contribution from connected triple excitations is more important than the differences between the Brueckner and coupled-cluster correlation methods.

Lee, Timothy J.↗

Planar Rayleigh scattering and laser-induced fluorescence for visualization of a hot, Mach 2 annular air jet

Planar Rayleigh scattering (PRS) and planar laser-induced fluorescence (PLIF) were used to investigate the vitiated air component of a coaxial hydrogen/vitiated air nonpremixed turbulent jet flame that is ejected at a Mach number of 2. All experiments were performed with a xenon chloride tunable excimer laser. Planar information for both techniques was obtained using laser sheets 6 cm high, 5 cm wide, and 300 micron thick. In this flow field, the effective Rayleigh cross section of the components in the vitiated air was assumed to be independent of composition. Therefore, the PRS technique produced signals which were proportional to total density. When the flow field was assumed to be at a known and uniform pressure, the PRS signal data for the vitiated air could be converted to temperature information. Also, PLIF images were generated by probing the OH molecule. These images contain striation patterns attributed to small localized instantaneous temperature nonuniformities. The results from the PLIF and PRS techniques were used to show that this flow field contains a nongaseous component, most likely liquid water that can be reduced by increasing the settling chamber wall temperature.

Balla, R. Jeffrey↗