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At least 253 records · Page 14

Novel hydrophobins from Trichoderma define a new hydrophobin subclass: protein properties, evolution, regulation and processing.

Hydrophobins are small proteins, characterised by the presence of eight positionally conserved cysteine residues, and are present in all filamentous asco- and basidiomycetes. They are found on the outer surfaces of cell walls of hyphae and conidia, where they mediate interactions between the fungus and the environment. Hydrophobins are conventionally grouped into two classes (class I and II) according to their solubility in solvents, hydropathy profiles and spacing between the conserved cysteines. Here we describe a novel set of hydrophobins from Trichoderma spp. that deviate from this classification in their hydropathy, cysteine spacing and protein surface pattern. Phylogenetic analysis shows that they form separate clades within ascomycete class I hydrophobins. Using T. atroviride as a model, the novel hydrophobins were found to be expressed under conditions of glucose limitation and to be regulated by differential splicing.

Fungi, hydrophobin↗

Opto-electrokinetic manipulation technique for highperformance

This communication first demonstrates bio-compatibility of a recently developed opto-electrokinetic manipulation technique, using microorganisms. Aggregation, patterning, translation, trapping and size-based separation of microorganisms performed with the technique firmly establishes its usefulness for development of a high-performance on-chip bioassay system.

bacteria↗

Structural, optical and magnetic properties of polycrystalline BaTi{sub 1-x}Fe{sub x}O{sub 3} ceramics

Polycrystalline BaTi{sub 1-x}Fe{sub x}O{sub 3} ceramics have been prepared by conventional solid-state reaction. Their structural, optical and magnetic properties are then studied by means of x-ray diffraction (XRD), Raman scattering (RS) and absorption spectrometers, and a physical properties measurement system. Detailed analyses of XRD patterns and RS spectra reveal the phase separation of the tetragonal-hexagonal structure at a threshold concentration of x = 0.005. The increase in the Fe-doping content (x) leads to development of the hexagonal phase. Magnetic measurements prove that many BaTi{sub 1-x}Fe{sub x}O{sub 3} samples exhibit the room-temperature ferromagnetic order, excepting the samples with x = 0.02-0.06. The ferromagnetism depends strongly on concentration of Fe impurities. The nature of this ferromagnetism is discussed by means of the results of structural analyses and optical absorption spectra.

36 MATERIALS SCIENCE↗

A split-beam probe-pump-probe scheme for femtosecond time resolved protein X-ray crystallography

In order to exploit the femtosecond pulse duration of X-ray Free-Electron Lasers (XFEL) operating in the hard X-ray regime for ultrafast time-resolved protein crystallography experiments, critical parameters that determine the crystallographic signal-to-noise (I/σI) must be addressed. For single-crystal studies under low absorbed dose conditions, it has been shown that the intrinsic pulse intensity stability as well as mode structure and jitter of this structure, significantly affect the crystallographic signal-to-noise. Here, geometrical parameters are theoretically explored for a three-beam scheme: X-ray probe, optical pump, X-ray probe (or “probe-pump-probe”) which will allow experimental determination of the photo-induced structure factor amplitude differences, ΔF, in a ratiometric manner, thereby internally referencing the intensity noise of the XFEL source. In addition to a non-collinear split-beam geometry which separates un-pumped and pumped diffraction patterns on an area detector, applying an additional convergence angle to both beams by focusing leads to integration over mosaic blocks in the case of well-ordered stationary protein crystals. Ray-tracing X-ray diffraction simulations are performed for an example using photoactive yellow protein crystals in order to explore the geometrical design parameters which would be needed. The specifications for an X-ray split and delay instrument that implements both an offset angle and focused beams are discussed, for implementation of a probe-pump-probe scheme at the European XFEL. We discuss possible extension of single crystal studies to serial femtosecond crystallography, particularly in view of the expected X-ray damage and ablation due to the first probe pulse.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Point contacts in encapsulated graphene

We present a method to establish inner point contacts with dimensions as small as 100 nm on hexagonal boron nitride (hBN) encapsulated graphene heterostructures by pre-patterning the top-hBN in a separate step prior to dry-stacking. 2- and 4-terminal field effect measurements between different lead combinations are in qualitative agreement with an electrostatic model assuming point-like contacts. The measured contact resistances are 0.5–1.5 kΩ per contact, which is quite low for such small contacts. By applying a perpendicular magnetic field, an insulating behaviour in the quantum Hall regime was observed, as expected for inner contacts. The fabricated contacts are compatible with high mobility graphene structures and open up the field for the realization of several electron optical proposals.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Gamma-ray burst pulse shapes: Evidence for embedded shock signatures?

A study of a set of well-isolated pulses in long and intermediate gamma-ray burst (GRB) light curves indicates that simple pulse models having smooth and monotonic pulse rise and decay regions are inadequate. Examining the residuals of fits of pulses to such models suggests the following patterns of departure from smooth pulses: three separate wavelike peaks found in the residuals of each pulse (the precursor peak, the central peak, and the decay peak) combine with the underlying Norris et al. pulse model to produce five distinct regions in the temporal evolution of each pulse. The Precursor Shelf occurs prior to or concurrent with the exponential Rapid Rise. The pulse reaches maximum intensity at the Peak Plateau, then undergoes a Rapid Decay. The decay gradually slows into an Extended Tail. Despite these distinct temporal segments, the pulses studied are almost universally characterized by hard-to-soft spectral evolution, arguing that the new pulse features reflect a single evolution, rather than being artifacts of pulse overlap. The fluctuations can give a single pulse the appearance of having up to three distinct localized peaks, leading to ambiguities in pulse-fitting if an incorrect pulse model is used. The approach demonstrates that complex GRBs may be composed of fewer pulses than indicated by the number of peaks. The large degree of similar spectro-temporal behavior within GRB pulses indicates that a single process is responsible for producing pulses spanning a tremendous range of durations, luminosities, and spectral hardnesses, and the correlated characteristics of the wavelike peaks are related to the pulse asymmetry, suggesting kinematic origins that seem supportive of relativistic shocks.

79 ASTRONOMY AND ASTROPHYSICS↗

Continuum model of irradiation-induced spinodal decomposition in the presence of dislocations

A model of phase-separation kinetics in systems exposed to energetic particle irradiation has been extended to include the effects of mobile dislocations. It is shown that when dislocations are allowed to participate in the decomposition reaction, phase separation can occur at temperatures above the coherent spinodal, which is in agreement with several experiments on irradiated alloys. A linear stability analysis of the governing kinetic equations is performed and three regimes of microstructural evolution are identified within the parameter space of damage cascade size vs incident flux: complete phase separation, solid-solution behavior, and compositional patterning. In addition, numerical simulations of the evolving dislocation density and composition fields are performed. The numerical results provide the amplitude and wavelength of the stable patterns that can form under irradiation and elucidate the role of misfit dislocations in reducing the coherency strain due to atomic size mismatch.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Complex state found in the colossal magnetoresistance regime of models for manganites

The colossal magnetoresistance (CMR) effect of manganites is widely believed to be caused by the competition between a ferromagnetic (FM) metallic state induced by the double-exchange mechanism and an insulator with complex spin, charge, and orbital order. Recent computational studies in small clusters have indeed reported a CMR precisely near the frontier between those two states at a realistic hole density x = 1/4. However, the detailed characteristics of the competing insulator were not fully understood in those previous investigations. This insulator is expected to display special properties that lead to the CMR; otherwise any competition between ferromagnetic and antiferromagnetic states would induce such an effect, which is not the case experimentally. In this report, the competing insulator at electronic density x = 1/4 and in the CMR regime is studied in detail using the double-exchange two-orbital model with Jahn-Teller lattice distortions on two-dimensional clusters, employing a careful large-scale cooling down process in the Monte Carlo simulations to avoid being trapped in metastable states. Our investigations show that this competing insulator has an unexpected complex structure, involving diagonal stripes with alternating regions displaying FM and CE-like order. The level of complexity of this new state even surpasses that of the recently unveiled spin-orthogonal-stripe states and their associated high degeneracy. This new state complements the long-standing scenario of phase separation, since the alternating FM-CE pattern appears even in the clean limit. The present and recent investigations are also in agreement with the many glassy characteristics of the CMR state found experimentally, due to the high degeneracy of the insulating states involved in the process. Results for the spin-structure factor of the new states are also here provided to facilitate the analysis of neutron scattering experiments for these materials.

Sen, Cengiz↗

Extensive gene flow over Europe and possible speciation

Biogeographical patterns and large-scale genetic structure have been little studied in ectomycorrhizal (EM) fungi, despite the ecological and economic importance of EM symbioses. We coupled population genetics and phylogenetic approaches to understand spatial structure in fungal populations on a continental scale. Using nine microsatellite markers, we characterized gene flow among 16 populations of the widespread EM basidiomycete Laccaria amethystina over Europe (i.e. over 2900 km). We also widened our scope to two additional populations from Japan (104 km away) and compared them with European populations through microsatellite markers and multilocus phylogenies, using three nuclear genes (NAR, G6PD and ribosomal DNA) and two mitochondrial ribosomal genes. European L. amethystina populations displayed limited differentiation (average FST = 0.041) and very weak isolation by distance (IBD). This panmictic European pattern may result from effective aerial dispersal of spores, high genetic diversity in populations and mutualistic interactions with multiple hosts that all facilitate migration. The multilocus phylogeny based on nuclear genes confirmed that Japanese and European specimens were closely related but clustered on a geographical basis. By using microsatellite markers, we found that Japanese populations were strongly differentiated from the European populations (FST = 0.416), more than expected by extrapolating the European pattern of IBD. Population structure analyses clearly separated the populations into two clusters, i.e. European and Japanese clusters. We discuss the possibility of IBD in a continuous population (considering some evidence for a ring species over the Northern Hemisphere) vs. an allopatric speciation over Eurasia, making L. amethystina a promising model of intercontinental species for future studies.

59 BASIC BIOLOGICAL SCIENCES↗

A knowledge-informed large language model framework for U.S. nuclear power plant shutdown initiating event classification for probabilistic risk assessment

Identifying and classifying shutdown initiating events (SDIEs) is critical for developing shutdown probabilistic risk assessment for nuclear power plants. Existing computational approaches cannot achieve satisfactory performance due to the challenges of unavailable large, labeled datasets, imbalanced event types, and label noise. To address these challenges, we propose a hybrid pipeline that integrates a knowledge-informed machine learning model to prescreen non-SDIEs and a large language model (LLM) to classify SDIEs into four types. In the prescreening stage, we proposed a set of 44 SDIE text patterns that consist of the most salient keywords and phrases from six SDIE types. Text vectorization based on the SDIE patterns generates feature vectors that are highly separable by using a simple binary classifier. The second stage builds Bidirectional Encoder Representations from Transformers (BERT)-based LLM, which learns generic English language representations from self-supervised pretraining on a large dataset and adapts to SDIE classification by fine-tuning it on an SDIE dataset. The proposed approaches are evaluated on a dataset with 10,928 events using precision, recall ratio, F 1 score, and average accuracy. In conclusion, the results demonstrate that the prescreening stage can exclude more than 97% non-SDIEs, and the LLM achieves an average accuracy of 95.1% for SDIE classification.

99 - GENERAL AND MISCELLANEOUS↗

Multiple anode arc lamp system

A high-intensity xenon arc lamp having a plurality of separate anodes axially disposed in a symmetrical pattern which spaced a discharge gap from a common cathode is presented.

Miller, C. G.↗

Anorthositic oceanic crust in the Archean Earth

Ultrapure minerals separated from eclogite inclusions in kimberlites were analyzed for Sm, Nd, Sr, and oxygen isotopes and for major and trace elements. Clinopyroxene (cpx) and garnet (gnt) are the only primary mineral phases in these rocks, and mineral phases and their alteration products. The WR sub calc. is the reconstructed bulk composition excluding all the contamination influences. Two groups of eclogites: are distinguished: (1) type A Noritic-anorthositic eclogites; and (2) type B Ti-ferrogabbroic eclogites. The oxygen isotopes are primary mantle-derived features of these rocks and are not caused by posteruption processes, as they were measured on unaltered, clean mineral separates and show a correlation with REE pattern and Sr and Nd isotopes. It is suggested that the variation of the oxygen isotopes are caused by crustal-level fluid-rock interaction at relatively low temperature. It is shown that oxygen isotopes variation in MORB basalts caused by the hydrothermal system are in the same range as the observed oxygen isotope variation in eclogites. A model to explain the new set of data is proposed. It is thought that some of these eclogites might be emplaced into the upper lithosphere or lower crust at the time corresponding to their internal isochron age. The calculated WR composition was used to estimate model ages for these rocks.

Jagoutz, E.↗

Characterization and Discrimination of Selected Vegetation Canopies from Field Observations of Bidirectional Reflectances

A full evaluation of the bidirectional reflectance properties of different vegetated surfaces was limited in past studies by instrumental inadequacies. With the development of the PARABOLA, it is now possible to sample reflectances from a large number of view angles in a short period of time, maintaining an almost constant solar zenith angle. PARABOLA data collected over five different canopies in Texas are analyzed. The objective of this investigation was to evaluate the intercanopy and intracanopy differences in bidirectional reflectance patterns. Particular attention was given to the separability of canopy types using different view angles for the red and the near infrared (NIR) spectral bands. Comparisons were repeated for different solar zenith angles. Statistical and other quantitative techniques were used to assess these differences. For the canopies investigated, the greatest reflectances were found in the backscatter direction for both bands. Canopy discrimination was found to vary with both view angle and the spectral reflectance band considered, the forward scatter view angles being most suited to observations in the NIR and backscatter view angles giving better results in the red band. Because of different leaf angle distribution characteristics, discrimination was found to be better at small solar zenith angles in both spectral bands.

Donovan, Sheila↗

Time evolution of surface chlorophyll patterns from cross-spectrum analysis of satellite color images

The rate of decorrelation of surface chlorophyll patterns as a function of the time separation between pairs of images was determined from two sequences of CZCS images of the Pacific Ocean area adjacent to Vancouver Island, Canada; cloud-free subareas were selected that were common to several images separated in time by 1-17 days. Image pairs were subjected to two-dimensional autospectrum and cross-spectrum analysis in an array processor, and squared coherence estimates found for several wave bands were plotted against time separation, in analogy with a time-lagged cross correlation function. It was found that, for wavelengths of 50-150 km, significant coherence was lost after 7-10 days, while for wavelengths of 25-50 km, significant coherence was lost after only 5-7 days. In both cases, offshore regions maintained coherence longer than coastal regions.

Denman, Kenneth L.↗

Analytical study of the origin and behavior of asymmetric vortices

An hypothesis advanced originally to explain computational observations is supported by theoretical considerations: The asymmetric mean flow observed on bodies of revolution at moderate to high angles of attack is the result of a convective instability of an originally symmetric flow to a time-invariant space-fixed disturbance. Additionally, the time-dependent fluctuations characteristic of the flow at higher angles of attack (up to 90 deg) are the result of an absolute instability of an originally steady flow to a small temporal disturbance of finite duration. Within a common domain, the instability mechanisms may coexist. The experimentally confirmed existence of bistable states, wherein the side-force variation with nose roll angle approaches a square-wave distribution, is attributed to the dominant influence of a pair of trailing vortices from the ogival forebody. Their existence is made possible by the appearance of foci of separation in the skin-friction line pattern beyond a critical angle of attack. The extreme sensitivity of the asymmetric flow orientation to nose geometry, demonstrated experimentally, is attributed to the presence of an indeterminate phase in the family of possible solutions for the three-dimensional wave system.

Tobak, Murray↗

Unsteady aerodynamic loading of delta wings for low and high angles of attack

Experimental and theoretical investigations dealing with unsteady flow phenomena are surveyed, with the emphasis on the pattern of vortices which originate from flow separation at sharp leading edges. It is concluded that these vortices exhibit quasi-steady behavior when the alpha-vibrations are such that bursting instability does not occur above the wing surface. A selection of test results from Jarrah (1988) is presented and discussed. For sharp-edged delta models at low speeds, the aerodynamic loads which are plotted quantify the role of parameters AR and K for three ranges of alpha-variation. An extremely approximate and empirical 'theory' is offered, with data on crossflow drag and burst location, to reproduce the behavior of these airloads up to 90 deg. Recent attempts to apply the more sophisticated tools of computational fluid dynamics to the combination of unsteadiness and very high alpha are shown to be deficient.

Ashley, H.↗

Hybrid image processing

Partly-digital, partly-optical 'hybrid' image processing attempts to use the properties of each domain to synergistic advantage: while Fourier optics furnishes speed, digital processing allows the use of much greater algorithmic complexity. The video-rate image-coordinate transformation used is a critical technology for real-time hybrid image-pattern recognition. Attention is given to the separation of pose variables, image registration, and both single- and multiple-frame registration.

Juday, Richard D.↗

Experimental results for a hypersonic nozzle/afterbody flow field

The flow field created by the interaction of a single-expansion-ramp-nozzle (SERN) flow with a hypersonic external stream has been experimentally characterized using a generic nozzle/afterbody model in the 3.5-foot hypersonic wind tunnel of the NASA Ames Research Center. The presented results include oil-flow and shadowgraph flow visualization photographs, afterbody surface-pressure distributions, boundary layer rake measurements, and Preston-tube skin-friction measurements. The design, construction, and operation of the model was found to be successful. Surface oil-flow patterns show that the jet-plume flow attaches to the afterbody surface at jet pressure ratios between 154 and 234. The oil flow also shows the pattern of lines where the jet flow separates from the ramp, apparently as a result of interaction of the jet-plume internal shock wave with the ramp boundary layer.

Spaid, Frank W.↗