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At least 253 records · Page 14
All sourcesNASA NTRSDOE OSTI
NASA NTRS2023

Oregon Coast Range Ecological Conservation: Mapping Recent Logging Within Drinking Watersheds of Oregon’s Coastal Range to Support Future Resource Management Policies

Logging operations are widespread across the Oregon Coast Range and conventional logging practices pose a risk of contamination to surface water quality. The NASA DEVELOP Oregon Coast Ecological Conservation team partnered with nonprofit Oregon Wild to quantify the extent of clearcutting and commercial thinning in 80 Coast Range drinking watersheds between 2000 and 2022. This project used all available Landsat data from 1997 through June 2023 in Google Earth Engine. Sensors used include Landsat 5 Thematic Mapper, Landsat 7 Enhanced Thematic Mapper Plus, Landsat 8 Operational Land Imager, and Landsat 9 Operational Land Imager-2. The Continuous Change Detection and Classification (CCDC) algorithm was used with Landsat observations to identify clearcutting patches. Percent change in summer median Landsat Normalized Difference Vegetation Index (NDVI) images were used to identify areas of forest disturbance including commercial thinning. The team concluded that logging, including both clearcutting and commercial thinning, impacted 31% of forested area in drinking watersheds and the intensity of logging remained consistent from year to year. Clearcutting occurred primarily on private land while commercial thinning occurred primarily on state and federal lands. This study showed that CCDC effectively identifies clearcutting, and percent change in NDVI successfully identifies disturbances including commercial thinning. Key constraints included the lack of field validation data and the inability to attribute disturbances to logging with certainty. Ultimately, this study identified the drinking watersheds and communities most likely to be impacted by logging activity. These results can inform legislation aimed at balancing the commercial and environmental benefits of forestlands.

Logging↗
NASA NTRS2023

Bandelier Ecological Conservation: Mapping Invasive Species Along the Rio Grande Corridor in Bandelier National Monument

The Southwest U.S. has experienced a growth of invasive riparian species, specifically Elaeagnus angustifolia (Russian olive), Tamarix ramosissima (saltcedar), and Ulmus pumila (Siberian elm), which alter local soil chemistry and outcompete native species. Locating these exotic species is critical for ecological conservation; however, field identification can be resource intensive. NASA DEVELOP partnered with the National Park Service (NPS) at Bandelier National Monument (BAND) to assess the feasibility of using Earth observation data to map invasive species along the Rio Grande corridor of the park. The team used Landsat 8 OLI, Sentinel-2 MSI, and ISS DESIS imagery to compute principal components based on spectral bands, vegetation indices, and terrain indices. Using the first five principal components, the team created classification maps using both a k-means classification algorithm and a random forest algorithm to differentiate between native and non-native species. The team derived maps for the three invasive riparian species in the region for the last five years. The team found that invasive species covered 33% of the park's river corridor in 2023, and the invasive species extent has increased by 5.7% from 2019 to 2023. The methods will serve as a guide for aiding historic and present invasive species identification in riparian regions, and the NPS staff at BAND will use the results to inform local mitigation practices and advocate for invasive species removal.

Evan Barrett↗
NASA NTRSDate not supplied

Does Collection Time Bias the Ecology of Cleanroom Air Samples?

Microbial monitoring of astromaterials collections has taken on increased importance with the return of biologically sensitive samples from the asteroids Ryugu and Bennu and the initiation of the Mars Sample Return Program. Terrestrial bacteria and fungi can alter the mineralogy and organic composition of our collections causing irreversible contamination of pristine samples and increasing the risk of false positives for life detection measurements. NASA has conducted routine microbial monitoring of its existing collections since 20181. Initial monitoring focused on surface samples collected with foam swabs. Although, airborne microbiology is often decoupled from surface microbiology in the built environment2 culture-based air sampling techniques like impactors were not compliant with existing contamination control requirements. Bringing organic rich media, gelatin or liquids into curation cleanrooms presents an unacceptable risk to pristine samples. In 2022 NASA purchased a materials complaint air sampler and began collecting air samples from the cleanrooms in addition to surface samples3. The new instrument uses an electret filter to collect samples that are suitable for cultivating organisms or for direct DNA sequencing. Preliminary DNA sequencing results appeared to indicate that longer sampling times biased the microbial community in favor of hearty, spore-forming bacteria3. We present the results of a study comparing overnight sampling (17 hours) to short (1 hour) sampling of unoccupied curation cleanrooms. The results will help us optimize our monitoring protocols and develop a more detailed inventory of the ecology of astromaterials curation cleanrooms. Methods: We analyzed 72 paired air samples from six different cleanrooms including the meteorite processing lab (ISO 7 equivalent, 16 samples), the lunar lab (ISO 6 equivalent, 10 samples), the stardust lab (ISO 5 equivalent 14 samples), the OSIRIS-REx lab (ISO 5 equivalent, 12 samples), the Hayabusa2 lab (ISO 5 equivalent, 14 samples), and the Genesis lab (ISO 4 equivalent, 6 samples). All the samples were collected with an InnovaPrep Bobcat air sampler operating at a sampling rate of 200 L/min. The sampler operates for 5 minutes out of every 20 minute period. Half of the samples were collected by filtering 3,000L (15 min. of active sampling) of air across an electret filter for one hour. The rest of the samples were collected by filtering approximately 51,000 L air across the filter overnight (~17 hours, 255 min. of active sampling). Cells were eluted from the filter using 6-7 ml of pressurized 0.15% tween 20 in PBS (phosphate buffered saline). This liquid was used to cultivate bacteria according to previously published methods1,4,5 and for DNA extraction and next generation sequencing. DNA was extracted with a Qiagen MagAttract PowerMicrobiome kit6. To identify bacteria and archaea, the 16S rRNA gene was amplified using Earth Microbiome primers for the V4 region 7. The amplified DNA was sequenced on an Illumina MiSeq using a V3 reagent kit. The resulting sequences were processed using DADA2 and QIIME2 as implemented on the EDGE bioinformatics platform8–10. Results: Only two of the 72 samples had no amplifiable DNA. Amplified DNA concentrations ranged from 2.67 – 0.272 ng/µl. The median concentration of amplified DNA for the 1 hour samples was 0.770 ± 0.368 ng/µl. The median concentration of amplified DNA for the overnight samples was 0.877 ± 0.434 ng/µl. On average the overnight samples had slightly more sequences (58,960 vs. 59,456) and ASV’s (amplicon sequence variants) (60 vs 64.5) than the one hour samples, but these differences are not statistically significant. The most abundant ASV in every sample mapped to the genus Cupravidus. ASV’s mapping to the genuses Bacillus, Schlegelella, Thermus, and Staphylococcus were also common. Discussion and Future Work: Alpha diversity statistics like Shannon Entropy and Faith Phylogenetic Diversity are used to describe the diversity of organisms in a single sample. If a longer sampling time was biasing the data, we would expect to see a change in these diversity statistics vs. sample time. However, we did not observe this in our data. The median Shannon entropy was slightly higher for the overnight samples (3.773 vs 3.611) as was the Faith Phylogenetic Diversity (4.042 vs 3.596), but both values were within a standard deviation of each other for the two sampling times (Fig. 1). It is unlikely, that the longer sampling time is introducing bias into our data. We do observe a significant decrease in diversity when comparing the air samples by lab. The Genesis lab (ISO 4 equivalent) has a lower median number of ASV’s (45.5) than the other labs (62). Median values for Shannon Entropy (3.717 vs. 3.430) and Faith Phylogenetic Diversity (3.796 vs. 3.548) are also lower for Genesis, but those values are with one standard deviation of each other for the different sampling times. This is consistent with previous culture-based results suggesting that the environment in cleanrooms tends to select for a core group of organisms capable of surviving under dry, low nutrient, conditions. The presence of the ASV’s mapping to Cupravidus and Thermus in our sequencing blanks and controls suggests that several of the most common organisms in our samples represent contaminants from the reagents used to perform the DNA extractions and sequencing. Further work is needed to identify these contaminants, remove them from our data and recalculate the diversity statistics. This is a systematic error. Therefore, we do not expect removing the sequencing contaminants to change our conclusions. Longer air sample collection times appear to result in slightly higher diversity and do not bias the results towards “hardy” bacteria like spore-formers. Based on these preliminary results we conclude that sampling at least 3,000 liters of air is sufficient to capture the microbial diversity of cleanrooms, and that air samples can also be collected overnight without negatively impacting diversity. These results allow us to be flexible when designing microbial monitoring plans so that they do not interfere with routine lab activity. References: 1. Regberg, A. B. et al. 49th Lunar and Planetary Science Conference (2018). 2. The United States Pharmacopeial Convention. USP General Chapter <1116> (2013). 3. Regberg, A. B., et al. 54th Lunar and Planetary Science Conference (2023). 4. Regberg, A. B. et al. 53rd Lunar and Planetary Science Conference ( 2022). 5. Davis, R. E.,et al. 50th Lunar and Planetary Science Conference (2019). 6. Qiagen. MagAttract® PowerMicrobiome® DNA/RNA EP Kit Handbook. (2018). 7. Walters, W. et al. mSystems 1, (2015). 8. Callahan, B. J. et al. Nat. Methods 13, 581–583 (2016). 9. Hall, M. & Beiko, R. G. Microbiome Analysis: Methods and Protocols113–129 (Springer, 2018). 10. Philipson, C. et al. Bio-Protoc. 7, e2622 (2017).

A. B. Regberg↗
NASA NTRS2024

Northern Rockies Ecological Conservation: Leveraging Earth Observations to Monitor and Predict Populations of Federally Threatened Whitebark Pine (Pinus albicaulis) across the Intermountain West

Whitebark pine (WBP; Pinus albicaulis) is an ecologically important species in North America. As a federally listed threatened species, an understanding of WBP habitat, distribution, and health is important for the natural resource managers of the National Park Service, United States Forest Service, Bureau of Land Management, Fish and Wildlife Service, and non-profit organizations such as the Whitebark Pine Ecosystem Foundation. Previous attempts to develop models of WBP habitat suitability and distribution lack confidence in their validity and integrity for these organizations. The updated models of habitat suitability and distribution developed by this study would provide managers with a capability to be employed in the conservation and future research direction for WBP. Thus, we developed a habitat suitability model of WBP at a high spatial resolution (Landsat 9 Operational Land Image-2, National Land Cover Database, NASA Shuttle Radar Topography Mission; 30m pixels) using a generalized logistic regression with an area under the curve value of 0.754. We extracted spectral reflectance signatures from overlapped ground sample points and Sentinel-2 Multispectral Instrument. The spectral signature analysis indicates WBP is separable from other tree species. We also utilized a visual validation approach and random forest (RF) modeling to separate WBP from limber pine. Through visual validation the RF classifier successfully identified 8out of 10 WBP trees gathered through ground truth points. Additionally, we achieved an overall accuracy of 91%in our confusion matrix for the distribution model using a dependent validation approach. The derived products from this study allow project partners to assess current suitable habitat and apparent health status in areas of identified WBP occurrence, providing data to aid future research regarding WBP health.

Sentinel-2↗
NASA NTRS2024

Central Park Ecological Conservation: Assessing Tree Health Conditions in New York City’s Central Park with NASA Earth Observation Data

The Central Park Conservancy stewards New York City’s iconic Central Park with a mission to preserve the park for all. This mission is complicated by the spread of Dutch elm disease (DED) which has threatened the culturally and ecologically significant American elm tree (Ulmus americana). Central Park is home to one of the largest and last remaining urban concentrations of American elm and the Conservancy currently protects them through integrated pest management. This paper discusses an interdisciplinary feasibility study that assessed the application of NASA Earth observations from 2014 to 2023 to detect changes in forest phenology possibly related to DED. Landsat 8 and 9 imagery was used to calculate multiyear time series of the Normalized Difference Vegetation Index (NDVI) and quantify changes in land surface phenology for a given year. A pixel-based logistic regression analysis was performed using changes in NDVI, tree site locations, and recorded occurrences of trees infected with DED as inputs. The results of this analysis show that changes in NDVI derived from Landsat data are capable of detecting unhealthy tree canopies with 71% precision and healthy tree canopies with 41% precision. The study had uncertainties and limitations due to the spatial and temporal resolutions of Landsat, the natural variability in land surface phenology and NDVI, and the attempt to detect disease impacts while disease prevention and mitigation is occurring. As is, the findings of this study and its methods provide managers with an approach for integrating Earth observations to make more informed decisions in the application and timing of urban forest management activities.

Central Park↗
NASA NTRS1964

Space ecological systems.

Closed environment life support systems dependent on propulsion systems and mission requirements

LIFE SUPPORT SYSTEM↗
NASA NTRS1966

Closing the ecology.

Completely regenerative spacecraft life support systems, discussing loop closure techniques and possible conversion methods for metabolic wastes

LIFE SUPPORT SYSTEM↗
NASA NTRS2002

Water cycles in closed ecological systems: effects of atmospheric pressure

In bioregenerative life support systems that use plants to generate food and oxygen, the largest mass flux between the plants and their surrounding environment will be water. This water cycle is a consequence of the continuous change of state (evaporation-condensation) from liquid to gas through the process of transpiration and the need to transfer heat (cool) and dehumidify the plant growth chamber. Evapotranspiration rates for full plant canopies can range from ~1 to 10 L m-2 d-1 (~1 to 10 mm m-2 d-1), with the rates depending primarily on the vapor pressure deficit (VPD) between the leaves and the air inside the plant growth chamber. VPD in turn is dependent on the air temperature, leaf temperature, and current value of relative humidity (RH). Concepts for developing closed plant growth systems, such as greenhouses for Mars, have been discussed for many years and the feasibility of such systems will depend on the overall system costs and reliability. One approach for reducing system costs would be to reduce the operating pressure within the greenhouse to reduce structural mass and gas leakage. But managing plant growth environments at low pressures (e.g., controlling humidity and heat exchange) may be difficult, and the effects of low-pressure environments on plant growth and system water cycling need further study. We present experimental evidence to show that water saturation pressures in air under isothermal conditions are only slightly affected by total pressure, but the overall water flux from evaporating surfaces can increase as pressure decreases. Mathematical models describing these observations are presented, along with discussion of the importance for considering "water cycles" in closed bioregenerative life support systems.

NASA Center KSC↗
NASA NTRS2002

Comparative ecology of H2 cycling in sedimentary and phototrophic ecosystems

The simple biochemistry of H2 is critical to a large number of microbial processes, affecting the interaction of organisms with each other and with the environment. The sensitivity of each of these processes to H2 can be described collectively, through the quantitative language of thermodynamics. A necessary prerequisite is to understand the factors that, in turn, control H2 partial pressures. These factors are assessed for two distinctly different ecosystems. In anoxic sediments from Cape Lookout Bight (North Carolina, USA), H2 partial pressures are strictly maintained at low, steady-state levels by H2-consuming organisms, in a fashion that can be quantitatively predicted by simple thermodynamic calculations. In phototrophic microbial mats from Baja California (Mexico), H2 partial pressures are controlled by the activity of light-sensitive H2-producing organisms, and consequently fluctuate over orders of magnitude on a daily basis. The differences in H2 cycling can subsequently impact any of the H2-sensitive microbial processes in these systems. In one example, methanogenesis in Cape Lookout Bight sediments is completely suppressed through the efficient consumption of H2 by sulfate-reducing bacteria; in contrast, elevated levels of H2 prevail in the producer-controlled phototrophic system, and methanogenesis occurs readily in the presence of 40 mM sulfate.

Review, Tutorial↗
NASA NTRS1996

Anaerobic degradation of inedible crop residues produced in a Controlled Ecological Life Support System

An anaerobic reactor seeded with organisms from an anaerobic lagoon was used to study the degradation of inedible crop residues from potato and wheat crops grown in a closed environment. Conversion of this biomass into other products was also evaluated. Degradation of wheat volatile solids was about 25% where that of potato was about 50%. The main product of the anaerobic fermentation of both crops was acetic acid with smaller quantities of propionate and butyrate produced. Nitrate, known to be high in concentration in inedible potato and wheat biomass grown hydroponically, was converted to ammonia in the anaerobic reactor. Both volatile fatty acid and ammonia production may have implications in a crop production system.

NASA Program Advanced Life Support↗
NASA NTRS1996

The nutritional adequacy of a limited vegan diet for a Controlled Ecological Life-Support System

Purdue University, as well as the Johnson and Kennedy Space Centers and NASA Ames Research Center, are investigating approximately 5-10 plants that will be grown hydroponically to provide not only the energy and nutrients, but also the oxygen for humans habitating in Mars and lunar bases. The growth and nutritional status of rats fed either a control diet (adequate in all macro- and micronutrients) or a strict vegetarian diet consisting of 5 (vegan-5) or 10 (vegan-10) candidate crop species were investigated. In addition, vegan-10 diets were supplemented with mineral and/or vitamin mix at a level similar to the control diets to assess the effect of supplementation on nutrient status. The assessment of inedible plant material as an alternative food source was also investigated. Results of this study demonstrated that consumption of the vegan-10 diet significantly improved weight gain of rats compared to that for rats fed the vegan-5 diet. Mineral supplementation, at a level present in the control diet, to the vegan-10 diet improved growth and nutrient status, but growth was significantly lower compared to the control-fed rats. Inclusion of inedible plant material, high in ash content, improved some indices of nutrient status, without improving growth.

NASA Discipline Number 93-10↗
NASA NTRS1998

A 5.8S nuclear ribosomal RNA gene sequence database: applications to ecology and evolution

We complied a 5.8S nuclear ribosomal gene sequence database for animals, plants, and fungi using both newly generated and GenBank sequences. We demonstrate the utility of this database as an internal check to determine whether the target organism and not a contaminant has been sequenced, as a diagnostic tool for ecologists and evolutionary biologists to determine the placement of asexual fungi within larger taxonomic groups, and as a tool to help identify fungi that form ectomycorrhizae.

Databases, Factual↗