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DOE OSTI2025

Dynamic molecular architecture of the synaptonemal complex

During meiosis, pairing between homologous chromosomes is stabilized by the assembly of the synaptonemal complex (SC). The SC ensures the formation of crossovers between homologous chromosomes and regulates their distribution. However, how the SC regulates crossover formation remains elusive. We isolated an unusual mutation in Caenorhabditis elegans that disrupts crossover interference but not SC assembly. This mutation alters the unique C terminal domain of an essential SC protein, SYP-4, a likely ortholog of the vertebrate SC protein SIX6OS1. We use three-dimensional stochastic optical reconstruction microscopy (3D-STORM) to interrogate the molecular architecture of the SC from wild-type and mutant C. elegans animals. Using a probabilistic mapping approach to analyze super-resolution image data, we detect changes in the organization of the synaptonemal complex in wild-type animals that coincide with crossover designation. We also found that our syp-4 mutant perturbs SC architecture. Our findings add to growing evidence that the SC is an active material whose molecular organization contributes to chromosome-wide crossover regulation.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2024

TICC Clustering Library v.1.0

SAND2024-01234O TICC is a clustering algorithm that labels a sequence of data points according to numerical properties. This library is a Python implementation of the algorithm described in "Toeplitz Inverse Covariance-Based Clustering of Multivariate Time Series Data" (Hallac et al. 2017). It includes documentation, performance improvements, examples, and test coverage. This library allows users to automatically segment a series of multivariate data points according to their covariance—that is, the way the values at each data point are changing in relation to one another. This is useful for identifying periods in which a system is behaving. For example, if a sensor is measuring a car's velocity, steering wheel angle, braking and acceleration, TICC can determine when the car was stopped, beginning/exiting a turn, slowing or accelerating at an intersection, or driving on straight or curved roads. TICC can be applied to measure multiple quantities at known times. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525

Dalbey, Keith↗

DOE OSTI2020

Learning to Solve Large-Scale Security-Constrained Unit Commitment Problems

Security-constrained unit commitment (SCUC) is a fundamental problem in power systems and electricity markets. In practical settings, SCUC is repeatedly solved via mixed-integer linear programming (MIP), sometimes multiple times per day, with only minor changes in input data. In this work, we propose a number of machine learning techniques to effectively extract information from previously solved instances in order to significantly improve the computational performance of MIP solvers when solving similar instances in the future. Based on statistical data, we predict redundant constraints in the formulation, good initial feasible solutions, and affine subspaces where the optimal solution is likely to lie, leading to a significant reduction in problem size. Computational results on a diverse set of realistic and large-scale instances show that using the proposed techniques, SCUC can be solved on average 4.3 times faster with optimality guarantees and 10.2 times faster without optimality guarantees, with no observed reduction in solution quality. Out-of-distribution experiments provide evidence that the method is somewhat robust against data-set shift. Summary of Contribution. The paper describes a novel computational method, based on a combination of mixed-integer linear programming (MILP) and machine learning (ML), to solve a challenging and fundamental optimization problem in the energy sector. The method advances the state-of-the-art, not only for this particular problem, but also, more generally, in solving discrete optimization problems via ML. We expect that the techniques presented can be readily used by practitioners in the energy sector and adapted, by researchers in other fields, to other challenging operations research problems that are solved routinely.

Machine Learning↗

DOE OSTI2024

Data and scripts associated with: “Burn severity and vegetation type control phosphorus concentration, molecular composition, and mobilization”

This data package is associated with the publication “Burn severity and vegetation type control phosphorus concentration, molecular composition, and mobilization” published in European Geophysical Union - Biogeosciences (Barnes et al. 2025). This study investigates how phosphorus (P) biogeochemistry is altered by burn severity in contrasting types of vegetation chars. This data package documents the workflow used to process and generate the main figures and statistics in the manuscript. The R scripts reference minimally processed P nuclear magnetic resonance (P-NMR) and X-ray absorption near edge structure (P-XANES) data, as well as fully processed data including total elemental composition of the solid chars, total elemental composition of the char leachates (particulate and aqueous phases), and leachate aqueous phase molybdate reactive P concentration. These source data and associated metadata can be found on ESS-DIVE at https://data.ess-dive.lbl.gov/datasets/doi:10.15485/1894135 (Grieger et al. 2022; v3). Files and scripts included in this data package finish the processing workflow for P-NMR and P-XANES data. These data can be used to gain a better understanding of bulk chemical changes in chars and their leachates, as well as detailed molecular changes to P. This data package is associated with the GitHub repository found at https://github.com/river-corridors-sfa/rcsfa-RC3-BSLE_P. This data package is comprised of a “data” folder and a series of data processing and analysis scripts. Details on how to recreate the workflow can be found in the Critical Details section of the readme and the “workflow_readme.md” file. The file-level metadata file (file ending in “flmd.csv”) lists all files contained in this data package and descriptions for each. The data dictionary (file ending in “dd.csv”) describes all tabular data columns and their respective definitions and units.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2020

Quantum Algorithms for Collider Physics (Final Report)

The goal of this project was to unite powerful analysis techniques in high-energy physics (HEP) with cutting-edge advances in quantum information science (QIS). Almost every event at the Large Hadron Collider (LHC) involves jets, collimated sprays of particles that are copiously produced in proton-proton collisions. Current LHC algorithms to identify and classify jets are constrained by the limits of classical computation. Quantum algorithms could fundamentally change how collider data is analyzed, by speeding up existing classical algorithms and by enabling new quantum jet representations. By exploiting the capabilities of quantum computation, this research confronted the challenge of data analysis in collider physics.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2021

Nuclear Data and Cross Section Testing Using ENDF/B-VIII.0

With the release of the Evaluated Nuclear Data File (ENDF)/B-VIII.0 library, nuclear criticality safety practitioners and engineers have access to the latest cross section sets available for their analyses. However, these cross sections must be rigorously tested and validated to ensure that the nuclear data are responsive to the needs of the individuals responsible for developing, implementing, and maintaining computational tools for criticality safety applications. Thus, the ENDF/B-VIII.0 library is tested and validated with a large collection of experiments that were vetted by the International Criticality Safety Benchmark Evaluation Project and made available in the International Handbook of Evaluated Criticality Safety Benchmark Experiments. A selection of benchmark experiments for use within the criticality safety community were prepared and reviewed within the Verified, Archived Library of Inputs and Data (VALID), which is maintained by the Nuclear Energy and Fuel Cycle Division at Oak Ridge National Laboratory. The performance of the ENDF/B-VIII.0 library is assessed by using VALID models of benchmark experiments with the beta 12 version of SCALE 6.3 KENO V.a and KENO-VI Monte Carlo codes. The performance is compared with the results obtained from with the ENDF/B-VII.1 library. This report considers multigroup (MG) and continuous energy (CE) formats of the ENDF/B-VIII.0 and -VII.1 libraries. The benchmark experiments within VALID that validate the ENDF/B-VIII.0 library cover 15 broad system categories by using a range of fissile materials, uranium enrichments, plutonium isotopic vectors, and mixed uranium/plutonium systems. These forms are represented as metals, solutions, or various arrays of rods or plates that cover a variety of neutron energy spectra: thermal, fast, mixed, and intermediate. Over 600 cases were considered for use with the KENO V.a and KENO-VI codes with the ENDF/B-VIII.0 library. The results of the Monte Carlo comparison of ENDF/B-VIII.0 to ENDF/B-VII.1 with both KENO V.a and KENO-VI indicate that there is a less than 0.53% Δk difference between the bias of calculated k eff from the expected values. The CE ENDF/B-VIII.0 library results in smaller magnitude biases than the ENDF/B-VII.1 data for HEU-MET-FAST, HEU-SOL-THERM, IEU-MET-FAST, LEU-SOL-THERM, PU-SOL-THERM, and U233-MET-FAST systems, while the MG results yielded smaller magnitude biases for HEU-MET-FAST, HEU-SOL-THERM, IEU-MET-FAST, LEU-COMP-THERM, LEU-SOL THERM, MIX-COMP-FAST, and U233-MET-FAST systems. Most notable are the adjustments to the plutonium and 233 U cross section data, which has resulted in noticeably lower biases in the ENDF/B VIII.0 results for the mixed, plutonium, and 233 U systems. Results of the sensitivity data file comparison generated from TSUNAMI-3D for selected VALID cases for the ENDF/B-VIII.0 library indicate a very high level of agreement with correlation coefficients of the effect of nuclear data uncertainty on k eff (the c k integral parameter) all above 0.99. This indicates that cases with the ENDF/B-VIII.0 library would see very similar responses to any nuclear data errors or change as those with the ENDF/B-VII.1 library.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

DOE OSTI2021

Multi-Process Tooling

Decisions made early in the automotive design process influence material selection, which in turn dictates process selection and tool design. Because of tool build time and cost of tooling, the original path is not easily altered, even if there is compelling evidence that another material or process would be beneficial. This project focused on tool design that is agile enough to allow its use in multiple processes—injection, injection compression, and extrusion-compression. This tool design allows for the manufacture of components with the most efficient process or materials, without building multiple, single-process tools. The primary purpose of the Multi-Process Tool project was to physically demonstrate that a single, well-designed tool could be used to manufacture parts with a variety of materials that require different processes. A multi-process tool would be beneficial to providing data for any changes to the process since materials and processes can be interchanged without incurring additional tool cost(s). Battery tray parts, (representative of a multi-process tool, were successfully manufactured using various types of materials, such as fiber reinforced (carbon fiber and/or glass fibers, recycled carbon fibers), amorphous (PP, TPU), semi-crystalline (PA6, PA66), and crystalline (thermoset epoxy resin) polymers. Processing of the parts was achieved by injection molding, compression molding, compression overmolding, and injection overmolding. Specimens extracted from various locations on the battery tray parts were evaluated for mechanical properties (flexure and interlaminar shear strength properties). The results show that the tool can be used to produce parts from a wide range of materials and processes with no degradation of the physical or cosmetic properties.

42 ENGINEERING↗

DOE OSTI2022

SpecFIDLER User Manual: Software Version 2.4.0

The Spectroscopic Field Instrument for Detection of Low Energy Radiation (SpecFIDLER) allows response teams to detect and quantify plutonium contamination on the ground. Notional scenarios include dispersion from a weapon accident, or the launch failure of a space probe containing a radioisotope thermoelectric generator. Unlike other instruments, the thin-window sodium iodide detector is sensitive to the low-energy gamma rays emitted by plutonium isotopes. The system supports both mobile survey as well as stationary sampling. This manual provides information about installing, maintaining, and troubleshooting the SpecFIDLER. The scope of this document includes the physical hardware, software for data acquisition, and algorithms for data analysis. Recent changes to the software and algorithms aim to streamline the operation of the system.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2025

Core Model Proposal #390: Base Year Update: Initial Updates Preparing for the New Base Year

GCAM's current base year – the last historical year used for calibration – 2015, is considerably lagged compared to the present year, indicating out-of-date assumptions about near-past state of the resources, commodities, and technologies represented in GCAM. This proposal makes data and code changes to enable updating the GCAM base year easier by making the processing code more flexible and robust.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2023

SpecFIDLER User Manual (Software V.2.5.0)

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2024

SpecFIDLER User Manual (Software V.2.6.0)

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2020

SpecFIDLER User Manual (Software V.2.3.0)

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2021

Ocean Surface Flux Algorithm Effects on Earth System Model Energy and Water Cycles

Earth system models parameterize ocean surface fluxes of heat, moisture, and momentum with empirical bulk flux algorithms, which introduce biases and uncertainties into simulations. We investigate the atmosphere and ocean model sensitivity to algorithm choice in the Energy Exascale Earth System Model (E3SM). Flux differences between algorithms are larger in atmosphere simulations (where wind speeds can vary) than ocean simulations (where wind speeds are fixed by forcing data). Surface flux changes lead to global scale changes in the energy and water cycles, notably including ocean heat uptake and global mean precipitation rates. Compared to the control algorithm, both COARE and University of Arizona (UA) algorithms reduce global mean precipitation and top of atmosphere radiative biases. Further, UA may slightly reduce biases in ocean meridional heat transport. We speculate that changes seen here, especially in the ocean, could be even larger in coupled simulations.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2023

An attribution of the low single-scattering albedo of biomass burning aerosol over the southeastern Atlantic

Abstract. Aerosol over the remote southeastern Atlantic is some of the most sunlight-absorbing aerosol on the planet: the in situ free-tropospheric single-scattering albedo at the 530 nm wavelength (SSA530 nm) ranges from 0.83 to 0.89 within ORACLES (ObseRvations of Aerosols above CLouds and their intEractionS) aircraft flights from late August–September. Here we seek to explain the low SSA. The SSA depends strongly on the black carbon (BC) number fraction, which ranges from 0.15 to 0.4. Low organic aerosol (OA)-to-BC mass ratios of 8–14 and modified combustion efficiency values >0.975 point indirectly to the dry, flame-efficient combustion of primarily grass fuels, with back trajectories ending in the miombo woodlands of Angola. The youngest aerosol, aged 4–5 d since emission, occupied the top half of a 5 km thick plume sampled directly west of Angola with a vertically consistent BC:ΔCO (carbon monoxide) ratio, indicating a homogenization of the source emissions. The younger aerosol, transported more quickly off of the continent by stronger winds, overlaid older, slower-moving aerosol with a larger mean particle size and fraction of BC-containing particles. This is consistent with ongoing gas condensation and the coagulation of smaller non-BC particles upon the BC-containing particles. The particle volumes and OA:BC mass ratios of the older aerosol were smaller, attributed primarily to evaporation following fragmentation, instead of dilution or thermodynamics. The CLARIFY (CLoud–Aerosol–Radiation Interaction and Forcing: Year 2017) aircraft campaign sampled aerosols that had traveled further to reach the more remote Ascension Island. CLARIFY reported higher BC number fractions, lower OA:BC mass ratios, and lower SSA yet larger mass absorption coefficients compared to this study's. Values from one ORACLES 2017 flight, held midway to Ascension Island, are intermediate, confirming the long-range changes. Overall the data are most consistent with continuing oxidation through fragmentation releasing aerosols that subsequently enter the gas phase, reducing the OA mass, rather than evaporation through dilution or thermodynamics. The data support the following best fit: SSA530nm=0.801+0055⋅(OA:BC) (r=0.84). The fires of southern Africa emit approximately one-third of the world's carbon; the emitted aerosols are distinct from other regional smoke emissions, and their composition needs to be represented appropriately to realistically depict regional aerosol radiative effects.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Idea to Deliverable: The Engineering Design Process

The engineering design process is utilized to evolve an idea into a deliverable. This progression can take years, so to experience as much of the full design process as possible, this internship period was dedicated to working on several projects in different phases of the process. The result is a completed engineering project which provides a foundation that can be used to conduct research on a system by performing experiments, collecting data, and making changes as necessary to improve the system and answer new questions.

42 ENGINEERING↗

DOE OSTI2023

Analysis and Thermal Property Investigations into Ternary Actinide Chloride Salt Systems Containing UCl3 and PuCl3

While regulators, the scientific community, and MSR developers still lack access to literature data on the thermal properties of clean fuel salts, even less information is available on the properties of fuel salts containing impurities. It is essential to understand, benchmark, and predict crucial data on the changes in thermal properties of fuel salt systems due to impurities arising from moisture, corrosion, and reactor operation (i.e., fission products). This research focuses on two actinide fuel salts (1) to investigate a worst-case scenario buildup of actinide fission product in a NaCl-UCl3 eutectic fuel salt and (2) to investigate NaCl-PuCl3 eutectic salt after 1000 hours of operation in a natural circulation flow loop flow to determine if corrosion or atmospheric (moisture/oxygen) products are present. For the first salt, a conservative assumption or worst-case scenario, for fission product buildup in a fuel salt was investigated by adding PuCl3 to eutectic 67 mol% NaCl – 33 mol% UCl3 salt resulting in a ternary salt having a composition of 61 mol% NaCl – 30 mol% UCl3 – 9mol% PuCl3. Addition of PuCl3 to eutectic NaCl-UCl3 resulted in a ternary salt that had a higher melting temperature than either the NaCl-PuCl3 or NaCl-UCl3 binary eutectic mixture. Addition of PuCl3 also resulted in an increase in density which was expected. The second salt was extracted from a micro loop. The composition of the fuel (primary) salt prior to flow loop operations was determined to be 64 mol% NaCl – 36 mol% PuCl3, however, the post-flow loop salt showed increased levels of MgCl2 and NaCl changing the salt composition to 10 mol% MgCl2 – 63mol% NaCl – 26mol% PuCl3) indicating the primary salt interacted with the rinse salt. Analysis of the post flow loop salt detected low concentrations of Al, Ni, Co, Nb, and Zr, most likely corrosion products from the flow loop material of construction. Contamination of the fuel salt (with the rinse salt NaCl-MgCl2) decreased the density by approximately 10% and reduced the onset of melting temperature by 50 °C, from 451 °C to approximately 400 °C. Results from the fission product simulated salt (61 mol% NaCl – 30 mol% UCl3 – 9mol% PuCl3) and the corrosion product salt (10 mol% MgCl2 – 63mol% NaCl – 26mol% PuCl3) will be included in two separate manuscripts for submission to peer-reviewed journals.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

DOE OSTI2024

State Machine Operation of Complex Systems

Operation of complex systems which depend on one, or more, sub-systems with many process variables often operate in more than one state. For each state there may be a variety of parameters of interest, and for each of these, one may require different alarm limits, different archiving needs, and have different critical parameters. Relying on operators to reliably change 102-105 parameters for each system for each state is unreasonable. Not changing these parameters results in alarms being ignored or disabled, critical changes missed, and/or data archiving inefficiencies. To reliably manage the operation of complex systems, such as cryomodules (CMs), Fermilab is implementing state machines for each CM and an over-arching state machine for the PIP-II superconducting LINAC (SCL). The state machine transitions and operating parameters are stored/restored to/from a configuration database. Proper implementation of the state machines will not only ensure safe and reliable operation of the CMs, but will help ensure reliable data quality. A description of PIP-II SCL, details of the state machines, and plans for imminent use the state machines for CM testing will be discussed.

43 PARTICLE ACCELERATORS↗

DOE OSTI2022

Tabulated Fluid Properties Research Report

The Multiphysics Object-Oriented Simulation Environment (MOOSE) enables a wide range of advanced nuclear reactor simulations.[6] Under the guidance of MOOSE’s Thermal Hydraulics Team,I worked to expand the capabilities of Tabulated Fluid Properties (TFP) in the fluid properties module. The fluid properties module allows the user to determine a variety of fluid properties by interpolating points between tabulated data. I implemented the ability to use bilinear interpolation instead of bicubic interpolation for interpolating tabulated data. I also changed the method of variable set inversions to use a 2-dimensional Newton’s Method utility that I created. Variable set inversions are often done from (v,e) to (p,T), where v is specific volume, e is specific internal energy, p is pressure and T is temperature. New routines have also been added into TFP such that it can be used with more applications, such as the Navier Stokes and Thermal Hydraulics modules in MOOSE for Pronghorn[5] and RELAP-7[1] respectively. This work was spurred by interest from NASA in testing a Nuclear Thermal Propulsion (NTP) engine system. NTP engines have drastically different fluid properties throughout the engine and Tabulated Fluid Properties provides the flexibility needed to properly simulate and test these engines.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗