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At least 253 records · Page 14

GASNet-EX RMA Communication Performance on Recent Supercomputing Systems

Partitioned Global Address Space (PGAS) programming models, typified by systems such as Unified Parallel C (UPC) and Fortran coarrays, expose one-sided Remote Memory Access (RMA) communication as a key building block for High Performance Computing (HPC) applications. Architectural trends in supercomputing make such programming models increasingly attractive, and newer, more sophisticated models such as UPC++, Legion and Chapel that rely upon similar communication paradigms are gaining popularity. GASNet-EX is a portable, open-source, high-performance communication library designed to efficiently support the networking requirements of PGAS runtime systems and other alternative models in emerging exascale machines. The library is an evolution of the popular GASNet communication system, building upon 20 years of lessons learned. We present microbenchmark results which demonstrate the RMA performance of GASNet-EX is competitive with MPI implementations on four recent, high-impact, production HPC systems. These results are an update relative to previously published results on older systems. The networks measured here are representative of hardware currently used in six of the top ten fastest supercomputers in the world, and all of the exascale systems on the U.S. DOE road map.

Hargrove, Paul H↗

GASNet-EX Specification Collection (Rev. 2024.5.0)

GASNet-EX is a portable, open-source, high-performance communication library designed to efficiently support the networking requirements of PGAS runtime systems and other alternative models in emerging exascale systems. It provides network-independent, high-performance communication primitives including Remote Memory Access (RMA) and Active Messages (AM). GASNet-EX is an evolution of the popular GASNet communication system, building upon over 20 years of lessons learned, and the primary goals are high performance, interface portability, and expressiveness. The library has been used to implement parallel programming models and libraries such as UPC, UPC++, Fortran coarrays, Legion, Chapel, and many others. This anthology collects together the four separate volumes that currently comprise the GASNet-EX specification, as of the 2024.5.0 release of GASNet-EX.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

Efficient Active Message RMA in GASNet Using a Target-Side Reassembly Protocol (Extended Abstract)

GASNet is a portable, open-source, high-performance communication library designed to efficiently support the networking requirements of PGAS runtime systems and other alternative models on future exascale machines. This paper investigates strategies for efficient implementation of GASNet’s “AM Long” API that couples an RMA (Remote Memory Access) transfer with an Active Message (AM) delivery. We discuss several network-level protocols for AM Long and propose a new target-side reassembly protocol. We present a microbenchmark evaluation on the Cray XC Aries network hardware. The target-side reassembly protocol on this network improves AM Long end-to-end latency by up to 33%, and the effective bandwidth by up to 49%, while also enabling asynchronous source completion that drastically reduces injection overheads. The improved AM Long implementation for Aries is available in GASNet-EX release v2019.9.0 and later.

Hargrove, P↗

Hardware Selection and Performance of Low-Cost Fluorometers

Access to and extensive use of fluorometric analyses is limited, despite its extensive utility in environmental transport and fate. Wide-spread application of fluorescent tracers has been limited by the prohibitive costs of research-grade equipment and logistical constraints of sampling, due to the need for high spatial resolutions and access to remote locations over long timescales. Recently, low-cost alternatives to research-grade equipment have been found to produce comparable data at a small fraction of the price for commercial equipment. Here, we prototyped and benchmarked performance of a variety of fluorometer components against commercial units, including performance as a function of tracer concentration, turbidity, and temperature, all of which are known to impact fluorometer performance. While component performance was found to be comparable to the commercial units tested, the best configuration tested obtained a functional resolution of 0.1 ppb, a working concentration range of 0.1 to >300 ppb, and a cost of USD 59.13.

42 ENGINEERING↗

Inexpensive high-temperature furnace for thermocouple calibration

New furnace calibrates unknown thermocouple by comparing its electrical output to a reference thermocouple /previously calibrated by optical pyrometry/, as both are heated simultaneously. Thermocouples may be radioactive, thus heat source must be accessible by remote manipulation and inspection measurements. Advantages of furnace operation are cited.

Gracey, C. M.↗

Considerations for an earth physics information-management service.

In a preliminary investigation into the feasibility of establishing a data center for earth physics, 12 disciplines were considered for inclusion. Estimation of the size of the data base for each indicated a need for storage of approximately 10 to the 10th power characters. The computer-based system deemed most worthy of further investigation was the interactive concept with remote-terminal access. Users are divided into three classes according to how they would access information: with no terminal, with an interactive terminal, and with a multidevice terminal. All these users can be served by the same center without any particular difficulty, but the real benefactor is the user with an interactive terminal, because he can compile, debug, and run programs in one continuous session. Final points stressed are multiprogramming for dynamic resource sharing, hardware modularity for future expansion, and information protection for such a large community of users. It is concluded that a survey should be conducted to gather more information from the potential users of such a system, and that a pilot project should be developed at some location where both earth-physics research and data-processing capabilities already exist.

Martin, R. W.↗

Proposal to evaluate the use of ERTS-1 imagery in mapping and managing soil and range resources in the Sand Hills region of Nebraska

The author has identified the following significant results. Increase in radiance values is directly related to decrease in vegetative biomass, though not in a linear manner. Should the relationship hold true over an entire growing season, this would allow an extremely rapid evaluation of range condition. Computer access by remote terminal would allow production of this type of range condition evaluation in near real time, which is essential if grazing practice decisions are to be made based on satellite imagery acquisition. Negating the manipulation of photographic products appears to be the logical way to provide satellite imagery data to the user in near real time. There appears to be a direct linear relationship between radiance values of bands 4 and 5 and increase in total inorganic ions (6 ions) of lakes in the Sand hills region. Consistent ion concentration of lakes during the year could allow their radiance values to serve as a means of equating radiance values from image to image.

Drew, J. V.↗

Cost comparison of competing local distribution systems for communication satellite traffic

The boundaries of market areas which favor various means for distributing communications satellite traffic are considered. The distribution methods considered are: control Earth station with cable access, rooftop Earth stations, Earth station with radio access, and various combinations of these methods. The least cost system for a hypothetical region described by number of users and the average cable access mileage is discussed. The region is characterized by a function which expresses the distribution of users. The results indicate that the least cost distribution is central Earth station with cable access for medium to high density areas of a region combined with rooftop Earth stations or (for higher volumes) radio access for remote users.

Dopfel, F. E.↗

Interactive FORTRAN IV computer programs for the thermodynamic and transport properties of selected cryogens (fluids pack)

The thermodynamic and transport properties of selected cryogens had programmed into a series of computer routines. Input variables are any two of P, rho or T in the single phase regions and either P or T for the saturated liquid or vapor state. The output is pressure, density, temperature, entropy, enthalpy for all of the fluids and in most cases specific heat capacity and speed of sound. Viscosity and thermal conductivity are also given for most of the fluids. The programs are designed for access by remote terminal; however, they have been written in a modular form to allow the user to select either specific fluids or specific properties for particular needs. The program includes properties for hydrogen, helium, neon, nitrogen, oxygen, argon, and methane. The programs include properties for gaseous and liquid states usually from the triple point to some upper limit of pressure and temperature which varies from fluid to fluid.

Mccarty, R. D.↗

Translation and execution of distributed Ada programs - Is it still Ada?

Some of the fundamental issues and tradeoffs for distributed execution systems for the Ada language are examined. Steps that need to be taken to deal with heterogeneity of addressing program objects, of processing resources, and of the individual processor environment are considered. The ways in which program elements can be assigned are examined in the context of four issues: implied remote object access, object visibility and recursive execution, task termination problems, and distributed types.

Volz, Richard A.↗

The GONG Data Reduction and Analysis System

Each of the six GONG observing stations will produce three, 16-bit, 256X256 images of the Sun every 60 sec of sunlight. These data will be transferred from the observing sites to the GONG Data Management and Analysis Center (DMAC), in Tucson, on high-density tapes at a combined rate of over 1 gibabyte per day. The contemporaneous processing of these data will produce several standard data products and will require a sustained throughput in excess of 7 megaflops. Peak rates may exceed 50 megaflops. Archives will accumulate at the rate of approximately 1 terabyte per year, reaching nearly 3 terabytes in 3 yr of observing. Researchers will access the data products with a machine-independent GONG Reduction and Analysis Software Package (GRASP). Based on the Image Reduction and Analysis Facility, this package will include database facilities and helioseismic analysis tools. Users may access the data as visitors in Tucson, or may access DMAC remotely through networks, or may process subsets of the data at their local institutions using GRASP or other systems of their choice. Elements of the system will reach the prototype stage by the end of 1988. Full operation is expected in 1992 when data acquisition begins.

Pintar, James A.↗

Code 672 observational science branch computer networks

In general, networking increases productivity due to the speed of transmission, easy access to remote computers, ability to share files, and increased availability of peripherals. Two different networks within the Observational Science Branch are described in detail.

Hancock, D. W.↗

Supporting shared data structures on distributed memory architectures

Programming nonshared memory systems is more difficult than programming shared memory systems, since there is no support for shared data structures. Current programming languages for distributed memory architectures force the user to decompose all data structures into separate pieces, with each piece owned by one of the processors in the machine, and with all communication explicitly specified by low-level message-passing primitives. A new programming environment is presented for distributed memory architectures, providing a global name space and allowing direct access to remote parts of data values. The analysis and program transformations required to implement this environment are described, and the efficiency of the resulting code on the NCUBE/7 and IPSC/2 hypercubes are described.

Koelbel, Charles↗

Programming distributed memory architectures using Kali

Programming nonshared memory systems is more difficult than programming shared memory systems, in part because of the relatively low level of current programming environments for such machines. A new programming environment is presented, Kali, which provides a global name space and allows direct access to remote data values. In order to retain efficiency, Kali provides a system on annotations, allowing the user to control those aspects of the program critical to performance, such as data distribution and load balancing. The primitives and constructs provided by the language is described, and some of the issues raised in translating a Kali program for execution on distributed memory systems are also discussed.

Mehrotra, Piyush↗

Distributed Active Archive Center

The Goddard Space Flight Center Version 0 Distributed Active Archive Center (GSFC V0 DAAC) is being developed to enhance and improve scientific research and productivity by consolidating access to remote sensor earth science data in the pre-EOS time frame. In cooperation with scientists from the science labs at GSFC, other NASA facilities, universities, and other government agencies, the DAAC will support data acquisition, validation, archive and distribution. The DAAC is being developed in response to EOSDIS Project Functional Requirements as well as from requirements originating from individual science projects such as SeaWiFS, Meteor3/TOMS2, AVHRR Pathfinder, TOVS Pathfinder, and UARS. The GSFC V0 DAAC has begun operational support for the AVHRR Pathfinder (as of April, 1993), TOVS Pathfinder (as of July, 1993) and the UARS (September, 1993) Projects, and is preparing to provide operational support for SeaWiFS (August, 1994) data. The GSFC V0 DAAC has also incorporated the existing data, services, and functionality of the DAAC/Climate, DAAC/Land, and the Coastal Zone Color Scanner (CZCS) Systems.

Bodden, Lee↗

Dynamic object management for distributed data structures

In distributed-memory multiprocessors, remote memory accesses incur larger delays than local accesses. Hence, insightful allocation and access of distributed data can yield substantial performance gains. The authors argue for the use of dynamic data management policies encapsulated within individual distributed data structures. Distributed data structures offer performance, flexibility, abstraction, and system independence. This approach is supported by data from a trace-driven simulation study of parallel scientific benchmarks. Experimental data on memory locality, message count, message volume, and communication delay suggest that data-structure-specific data management is superior to a single, system-imposed policy.

Totty, Brian K.↗

Architecture and evolution of Goddard Space Flight Center Distributed Active Archive Center

The Goddard Space Flight Center (GSFC) Distributed Active Archive Center (DAAC) has been developed to enhance Earth Science research by improved access to remote sensor earth science data. Building and operating an archive, even one of a moderate size (a few Terabytes), is a challenging task. One of the critical components of this system is Unitree, the Hierarchical File Storage Management System. Unitree, selected two years ago as the best available solution, requires constant system administrative support. It is not always suitable as an archive and distribution data center, and has moderate performance. The Data Archive and Distribution System (DADS) software developed to monitor, manage, and automate the ingestion, archive, and distribution functions turned out to be more challenging than anticipated. Having the software and tools is not sufficient to succeed. Human interaction within the system must be fully understood to improve efficiency to improve efficiency and ensure that the right tools are developed. One of the lessons learned is that the operability, reliability, and performance aspects should be thoroughly addressed in the initial design. However, the GSFC DAAC has demonstrated that it is capable of distributing over 40 GB per day. A backup system to archive a second copy of all data ingested is under development. This backup system will be used not only for disaster recovery but will also replace the main archive when it is unavailable during maintenance or hardware replacement. The GSFC DAAC has put a strong emphasis on quality at all level of its organization. A Quality team has also been formed to identify quality issues and to propose improvements. The DAAC has conducted numerous tests to benchmark the performance of the system. These tests proved to be extremely useful in identifying bottlenecks and deficiencies in operational procedures.

Bedet, Jean-Jacques↗

A Spacebased Ocean Surface Exchange Data Analysis System

Emerging technologies have provided unprecedented opportunities to transform information into knowledge and disseminate them in a much faster, cheaper, and userfriendly mode. We have set up a system to produce and disseminate high level (gridded) ocean surface wind data from the NASA Scatterometer and European Remote Sensing missions. The data system is being expanded to produce real-time gridded ocean surface winds from an improved sensor SeaWinds on the Quikscat Mission. The wind field will be combined with hydrologic parameters from the Tropical Rain Measuring Mission to monitor evolving weather systems and natural hazard in real time. It will form the basis for spacebased Ocean Surface Exchange Data Analysis System (SOSEDAS) which will include the production of ocean surface momentum, heat, and water fluxes needed for interdisciplinary studies of ocean-atmosphere interaction. Various commercial or non-commercial software tools have been compared and selected in terms of their ability in database management, remote data accessing, graphical interface, data quality, storage needs and transfer speed, etc. Issues regarding system security and user authentication, distributed data archiving and accessing, strategy to compress large-volume geophysical and satellite data/image. and increasing transferring speed are being addressed. A simple and easy way to access information and derive knowledge from spacebased data of multiple missions is being provided. The evolving 'knowledge system' will provide relevant infrastructure to address Earth System Science, make inroads in educating an informed populace, and illuminate decision and policy making.

Tang, Wenqing↗