An Engineered Glutamate in Biosynthetic Models of Heme-Copper Oxidases Drives Complete Product Selectivity by Tuning the Hydrogen-Bonding Network
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Ethylene-forming enzyme (EFE) is an ambifunctional iron(II)- and 2-oxoglutarate-dependent (Fe/2OG) oxygenase. In its major (EF) reaction, it converts carbons 1, 2, and 5 of 2OG to CO 2 and carbons 3 and 4 to ethylene, a four-electron oxidation drastically different from the simpler decarboxylation of 2OG to succinate mediated by all other Fe/2OG enzymes. EFE also catalyzes a minor reaction, in which the normal decarboxylation is coupled to oxidation of L-arginine (a required activator for the EF pathway), resulting in its conversion to L-glutamate semialdehyde and guanidine. Here we show that, consistent with precedent, the L-Arg-oxidation (RO) pathway proceeds via an iron(IV)-oxo (ferryl) intermediate. Use of 5,5-[ 2 H 2 ]-L-Arg slows decay of the ferryl complex by >16-fold, implying that RO is initiated by hydrogen-atom transfer (HAT) from C5. That this large substrate deuterium kinetic isotope effect has no impact on the EF:RO partition ratio implies that the same ferryl intermediate cannot be on the EF pathway; the pathways must diverge earlier. Consistent with this conclusion, the variant enzyme bearing the Asp191Glu ligand substitution accumulates ~ four times as much of the ferryl complex as the wild-type enzyme and exhibits a ~ 40-fold diminished EF:RO partition ratio. Here, the selective detriment of this nearly conservative substitution to the EF pathway implies that it has unusually stringent stereoelectronic requirements. An active-site, like-charge guanidium pair, which involves the L-Arg substrate/activator and is unique to EFE among four crystallographically characterized L-Arg modifying Fe/2OG oxygenases, may serve to selectively stabilize the transition state leading to the unique EF branch.
Flow-through solvolysis offers an opportunity to limit lignin condensation reactions that prevent isolation of native lignin in biomass processing, thus allowing for the study of intrinsic lignin properties and steady-state lignin depolymerization.
We report the continuous, gas-phase synthesis of α-methylene-δ-valerolactone (MVL) from δ-valerolactone (DVL) and formaldehyde (FA) over alkaline earth oxide catalysts.
Ethanol can be converted into diesel fuel ethers using a three-step catalytic approach that involves ethanol oligomerization to larger alcohols, hydrogenolysis of the esters followed by dehydration of the C4 to C8 alcohols into ethers. In this paper we report results for the dehydration of a mixture of C4 – C8 alcohols using a zeolite Y catalyst in a continuous flow reactor. Mono-molecular dehydration of the alcohols produces olefins while bi-molecular dehydration of the alcohol produces ethers. Increasing the pressure increases the ether selectivity while decreasing the pressure produces more olefins. Linear alcohol feeds produce more C8+ ethers, while branched and secondary alcohols lead to more olefins. Olefin and coke selectivities increase with increasing carbon chain length of alcohols. Secondary alcohols lead to higher coke selectivities. Furthermore, ethanol/Butanol oligomerization experiments showed that the incoming dehydration feedstock can be grown to larger C6+ alcohol fractions, leading to higher yields of C10+ diesel-range ethers.
Na-doped BiFeO 3 demonstrates an enhanced p-type behavior compared to p-type BiFeO 3 prepared without extrinsic dopants, and Na-doped BiFeO 3 can serve as a photocathode for solar O 2 reduction to H 2 O 2 when coupled with Ag nanoparticle catalysts.
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Explore the source record for details and available documents.
Explore the source record for details and available documents.
Explore the source record for details and available documents.
Scientific computing workloads at HPC facilities have been shifting from traditional numerical simulations to AI/ML applications for training and inference while processing and producing ever-increasing amounts of scientific data. To address the growing need for increased storage capacity, lower access latency, and higher bandwidth, emerging technologies such as non-volatile memory are integrated into supercomputer I/O subsystems. With these emerging trends, we need a better understanding of the multilayer supercomputer I/O systems and ways to use these subsystems efficiently. In this work, we study the I/O access patterns and performance characteristics of two representative supercomputer I/O subsystems. Through an extensive analysis of year-long I/O logs on each system, we report new observations in I/O reads and writes, unbalanced use of storage system layers, and new trends in user behaviors at the HPC I/O middleware stack.
This project aims to study the microbial structure and potential functions of bacterial and fungal microbiomes in leaves, stems, roots, rhizospheres, and bulk soils of energy crops (oilcane) grown in greenhouses.
Seeds of Col-0 wild type, sig6 T-DNA mutants (CS877785, ABRC), PRL-1-OE, and sig6 T-DNA mutants transfected with PRL-1 (sig6::PRL-1) were planted in 1/2 MS media. Seedlings growth including chlorophyll development defects were investigated across the genotypes. Four-days-old-post-light exposure seedlings were harvested and performed RNAseq analysis with four biological replicates.
An economic model was developed that incorporates spatially varying joint yield and price distributions for the multiple crop choices a farmer faces when choosing between conventional and bioenergy crops. The model is developed in Matlab, and has options for no, annual and upfront payment results.