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At least 253 records · Page 14

Free Energy and Flexibility Analysis of Autoinhibited Human BRAF

The RAF serine/threonine protein kinases function as direct effectors of RAS in the intracellular transmission of extracellular growth signals, and they are key targets for drug discovery, given the high incidence of oncogenic mutations in RAF and other components of this signaling pathway. In its inactive state, RAF is held in an autoinhibited conformation in the cytosol through a combination of intramolecular interactions and binding to a regulatory 14−3−3 protein dimer. Activation of RAF is initiated by its interaction with membrane-localized GTP-bound RAS, which induces conformational changes that release RAF from its autoinhibited state. However, the molecular mechanisms governing RAF activation remain incomplete, largely due to the challenges in experimentally capturing the intermediate conformational states in this process. To address this gap, we developed a comprehensive all-atom model of BRAF based on existing cryo-EM structures. Using this model, we performed extensive molecular dynamics simulations to evaluate the stability and free energy landscape of autoinhibited BRAF in solution. Our analysis reveals conformational flexibility within the autoinhibited complex, suggesting that this dynamic behavior may play a role in facilitating BRAF activation upon engagement with the membrane-bound RAS.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Investigation of the 244 Pu ⁢( 48 Ca,𝑥⁢𝑛) 292−𝑥 Fl reaction with the LBNL SHREC detector: Investigation of decay chains of isotopes of flerovium (𝑍=114)

The 244 Pu ⁢( 48 Ca,𝑥⁢𝑛)⁢ 292−𝑥 Fl reaction was investigated at Lawrence Berkeley National Laboratory’s 88 Inch Cyclotron using the Berkeley Gas-filled Separator (BGS), the newly installed Superheavy Recoil detector, along with an upgraded digital electronics and data acquisition system. Seven decay chains were observed starting with an evaporation residue, followed by a single 𝛼 decay and a spontaneous fission. The decay characteristics of these seven decay chains led to an assignment to 288 Fl , the product of the 4⁢𝑛 reaction channel. Two additional chains were (tentatively) assigned to the decay of the 3⁢𝑛 exit channel, 289 Fl . Cross sections for the 4⁢𝑛 and 3⁢𝑛 exit channels were 𝜎 prod =6.7⁢($^{36}_{25}$) pb and 𝜎 prod =1.6⁢($^{22}_{11}$) pb, respectively. Another decay chain, tentatively assigned to the 5⁢𝑛 exit channel through the 48 Ca + 244 Pu reaction or the 3⁢𝑛 exit channel of the 48 Ca + 242 Pu reaction, was also detected. Detailed information regarding the observed decay chains and their nuclear structure aspects is discussed, along with the performance of the BGS and the new detection system.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Industrial deposition of wavelength-shifting films for liquid argon photon detection systems

The Deep Underground Neutrino Experiment (DUNE) Phase-II Far Detector is considering an approximately 2000 m 2 photon detection system to achieve a target mean light yield of 180 PE/MeV. Meeting this requirement demands scalable, cost-effective, and high-quality wavelength-shifter (WLS) coatings capable of converting 127 nm liquid-argon scintillation light into visible photons with controlled and reproducible optical performance. We report on the successful realization of an industrial physical vapor deposition (PVD) process forp-terphenyl (pTP) coatings, adapted from vacuum deposition techniques developed for OLED display manufacturing, to produce uniform WLS layers on large-area inorganic substrates, a task traditionally challenged by adhesion and uniformity issues at organic-inorganic interfaces. Surface characterization by profilometry and spectroscopic measurements demonstrates edge-region thickness variation below 10% and emission spectra consistent with high-quality pTP reference samples. The industrial process demonstrates reproducibility, scalability, and significantly reduced production time compared to laboratory-based methods, while maintaining optical characteristics consistent with established pTP reference samples. These results establish a viable pathway for mass production of high-performance pTP coatings for DUNE FD3 and future neutrino experiments, from a coating manufacturing and process standpoint. Detector-level performance validation, including quantitative VUV conversion efficiency measurements at 127 nm, is identified as future work.

47 OTHER INSTRUMENTATION↗

Physics-Guided Deep Learning for Time-Series State Estimation Against False Data Injection Attacks

The modern power grid is a cyber-physical system. While the grid is becoming more intelligent with emerging sensing and communication techniques, new vulnerabilities are introduced and cyber security becomes a major concern. One type of cyber-attacks - False Data Injection Attacks (FDIAs) - exploits the limitations in traditional power system state estimation, and modifies system states without being detected. In this paper, we propose a physics-guided deep learning (PGDL) approach to defend against FDIAs. The PGDL takes real-time measurements as inputs to neural networks, outputs the estimated states, and reconstructs measurements considering power system physics. A deep recurrent neural network - Long Short-Term Memory (LSTM) - is employed to learn the temporal correlations among states. This hybrid learning model leads to a time-series state estimation method to defend against FDIAs. The simulation results using IEEE 14-bus test system demonstrate the accuracy and robustness of the proposed time-series state estimation under FDIAs.

Cyber security, state estimation, physics-guided d↗

Bio-based oxalic acid production in Issatchenkia orientalis enables sustainable rare earth recovery

The growing demand for rare earth elements (REEs) in clean energy and high-tech industries underscores the need for sustainable recovery methods and a reliable supply of processing chemicals. Here, we establish a microbial platform using the acid-tolerant yeast Issatchenkia orientalis SD108 to produce bio-oxalic acid for REE recovery. By introducing an oxaloacetate cleavage pathway and applying metabolic engineering, the engineered strain produces 39.53 g·L -1 oxalic acid at pH 4.0 in fed-batch fermentation. The crude fermentation broth, used without purification, efficiently precipitates over 99% neodymium (Nd), 99% dysprosium (Dy), and 98% lanthanum (La) from individual REE chloride solutions. Recovery from a low-grade ore leachate achieves over 99% total recovery. X-ray diffraction (XRD) and Fourier transform infrared spectroscopy (FTIR) confirm that REE oxalates precipitated with bio-oxalic acid closely resemble those obtained using commercial oxalic acid. Techno-economic analysis (TEA) and life cycle assessment (LCA) further demonstrate that bio-oxalic acid can be produced at a competitive price of $1.79·kg -1 while reducing carbon intensity (CI) by 112% to 63.5% with and without electricity displacement, respectively, relative to the fossil-based benchmark. These results highlight bio-oxalic acid as a green, economically viable alternative to synthetic oxalate for sustainable REE recovery.

59 BASIC BIOLOGICAL SCIENCES↗

Equation of State Constraints from Nuclear Physics, Neutron Star Masses, and Future Moment of Inertia Measurements

We explore constraints on the equation of state (EOS) of neutron-rich matter based on microscopic calculations up to nuclear densities and observations of neutron stars. In a previous work we showed that predictions based on modern nuclear interactions derived within chiral effective field theory and the observation of two-solar-mass neutron stars result in a robust uncertainty range for neutron star radii and the EOS over a wide range of densities. In this work we extend this study, employing both the piecewise polytrope extension from Hebeler et al. as well as the speed of sound model of Greif et al., and show that moment of inertia measurements of neutron stars can significantly improve the constraints on the EOS and neutron star radii.

79 ASTRONOMY AND ASTROPHYSICS↗

Forced Component Estimation Statistical Method Intercomparison Project (ForceSMIP)

Anthropogenic climate change is unfolding rapidly, yet its regional manifestation can be obscured by internal variability. A primary goal of climate science is to identify the externally forced climate response from among the noise of internal variability. Separating the forced response from internal variability can be addressed in climate models by using a large ensemble to average over different possible realizations of internal variability. However, with only one realization of the real world, it is a major challenge to isolate the forced response directly in observations. In the Forced Component Estimation Statistical Method Intercomparison Project (ForceSMIP), contributors used existing and newly developed statistical and machine learning methods to estimate the forced response over 1950–2022 within individual realizations of the climate system. Participants used neural networks, linear inverse models, fingerprinting methods, and low-frequency component analysis, among other approaches. These methods were trained using large ensembles from multiple climate models and then applied to observations. Here, we evaluate method performance within large ensembles and investigate the estimates of the forced response in observations. Our results show that many different types of methods are skillful for estimating the forced response in climate models, though the relative skill of individual methods varies depending on the variable and evaluation metric. Methods with comparable skill in models can give a wide range of estimates of the forced response pattern in observations, illustrating the epistemic uncertainty in forced response estimates. ForceSMIP gives new insights into the forced response in observations, its uncertainty, and methods for its estimation.

Climate attribution↗

Assessing Physical Relationships Between Atmospheric State, Fluxes, and Boundary Layer Stability at McMurdo Station, Antarctica

Observations at McMurdo Station, Antarctica from 24 November 2015 through 3 January 2017 were used to characterize the physical relationships between boundary layer stability and atmospheric state and fluxes. The basis of this analysis was self-organizing maps (SOMs), a neural network algorithm, used to identify the range of potential temperature profiles present in the twice-daily radiosonde data during the ARM (Atmospheric Radiation Measurement) West Antarctic Radiation Experiment (AWARE) campaign. The SOM identified profiles ranging from strongly stable to weakly stable regimes over the lowest 500 m of the atmosphere. It was found that in the winter (MJJA), moderate and strongly stable regimes occur most frequently (61%), while weakly stable regimes dominate in the summer (DJ, 83.4%). The mechanisms responsible for the dominance of different stability regimes in each season were analyzed to determine why these regimes occur with varying frequency throughout the year. This analysis found that wind speed variations and radiative cooling are responsible for the stability observed in the winter, radiative warming, as well as weaker wind speeds, are responsible for summer weak stability, and stability variations in the transition seasons (FMA, SON) are characterized by a change in sign of net radiation with increasing stability, as wind speed changes little across stability regimes. Low-level jets were observed to occur about 50% of the time below areas of enhanced stability aloft and were observed most frequently in the transition seasons. The boundary layer depth, as determined by the Bulk Richardson number, was found to decrease with increasing stability.

54 ENVIRONMENTAL SCIENCES↗

Search for new physics in the final state with a single photon and large missing transverse momentum in proton-proton collisions at √𝑠 =13 TeV

A search for new physics in events featuring a single photon and missing transverse momentum is presented, using proton-proton √𝑠 =13 TeV collision data corresponding to an integrated luminosity of 101 fb −1 collected by the CMS experiment at the CERN LHC between 2017 and 2018. This analysis, combined with a previous study of 36 fb −1 of 2016 data (totaling 137 fb −1 ), reveals no significant deviations from standard model expectations. The results are then used to establish 95% confidence level limits on parameters in theoretical models involving dark matter and large extra dimensions. Compared to the 2016-only analysis, this search achieves up to a 14% improvement in exclusion reach for mediator masses in simplified dark matter models, along with 11% and 10% enhancements in the limits on the effective field theory suppression scale and the fundamental Planck scale, respectively. These results are the most stringent constraints on these parameters to date.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Physics-guided Deep Learning for Power System State Estimation

In the past decade, dramatic progress has been made in the field of machine learning. This paper explores the possibility of applying deep learning in power system state estimation. Traditionally, physics-based models are used including weighted least square (WLS) or weighted least absolute value (WLAV). These models typically consider a single snapshot of the system without capturing temporal correlations of system states. In this paper, a physics-guided deep learning (PGDL) method is proposed. Specifically, inspired by autoencoders, deep neural networks (DNNs) are used to learn the temporal correlations. The estimated system states from DNNs are then checked against physics laws by running through a set of power flow equations. Hence, the proposed PGDL is both data-driven and physics-guided. The accuracy and robustness of the proposed PGDL method are compared with traditional methods in standard IEEE cases. Simulations show promising results and the applicability is further discussed.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Effect of graded physical load on the state of the liver from morphometric data and biochemical blood indices of rats against a background of hypokinesia

Tests were conducted on 100 sexually immature inbred August and Wistar male rats in order to determine the effects hypokinesia, physical load and phenamine on the liver. Weight and linear dimension fell in hypokinesia; total serum protein lowered and aldolase and cholesterol and beta-lipoprotein levels rose. Blood sugar content rose and liver glycogen fell. Interlinear differences of these indices are found. Rehabilitated physical loading against hypokinesia background diminished and at times completely prevented its negative effect. Extent of correction depended on animal species. Evidence of genotypical conditionality of organism adaptation to physical load in hypokinesia was found.

Nikityuk, B. A.↗

Coherent state constructions of bases for some physically relevant group chains

Rotor coherent state constructions are given for the Wigner supermultiplet SU(4) contains SU(2)xSU(2) and for the special irreducible representations (N0) of the SO(5) contains SO(3) contains SO(2) group chain in exact parallel with the rotor coherent state construction for the SU(3) contains SO(3) contains SO(2) case given by Rowe, LeBlanc,, and Repka. Matrix elements of the coherent state realizations of the group generators are given in all cases by very simple expressions in terms of angular momentum Wigner coefficients involving intrinsic projection labels K. The K-matrix technique of vector coherent state theory is used to effectively elevate these K labels to the status of good quantum numbers. Analytic expressions are given for the (K K*)-matrices for many of the more important irreducible representations.

Hecht, Karl T.↗

Non-Hermitian Quantum Mechanics Approach for Extracting and Emulating Continuum Physics Based on Bound-State-like Calculations

Here, this Letter introduces a unified emulation framework for studying continuum physics in finite quantum systems. Using a reduced basis method, we construct powerful emulators for the inhomogeneous Schrödinger equation that operate in a combined parameter space of complex energy (𝐸) and other inputs (𝜽). Within the space, the emulators simultaneously perform analytical continuation in 𝐸—extracting continuum physics from numerically simpler bound-state-like calculations—and interpolate this entire process across 𝜽. This yields a small, non-Hermitian system whose properties (e.g., resonances and scattering observables) can be rapidly predicted for any 𝜽. Crucially, the complex-𝐸 emulation provides a pathway to compute continuum observables for complex systems where advanced bound-state methods exist but direct continuum calculations are yet to be developed, while the 𝜽 emulation enables rapid parameter-space exploration and can be adapted to accelerate other existing continuum calculations. Demonstrations with two- and three-body systems highlight the method’s effectiveness and suggest its connection to (near-)optimal rational approximation. This Letter presents the key results, with further details reserved for a companion paper.

ab initio calculations↗

Manipulating Quantum Systems: An Assessment of Atomic, Molecular, and Optical Physics in the United States

The AMO2020 decadal report took a forward-looking perspective on how the different elements that constitute AMO science provide a broad interdisciplinary driver for capitalizing on future opportunities in the scientific community. Goals for this project were to produce a report that (1) displays AMO science as a vital field that relates and unifies broad scientific endeavors; (2) discusses how AMO is supplying these and other fields with emerging technologies and fulfilling national needs; (3) identifies new opportunities, compelling scientific questions, and themes that have arisen from recent advances and accomplishments in the AMO field; (4) explains how AMO science meets workforce, educational, and other societal needs; and (5)makes recommendations for a strategy to fully realize the potential at the frontiers of AMO science. The study also compared the trajectory of AMO science in the US in the context of the international community of AMO science, in terms of cooperation, collaboration, and competition. The study resulted in a report composed in a style accessible to the non-scientist reader in order to understand how AMO science will lead the way in these fields and what AMO researchers want to learn in the coming decades and why.

74 ATOMIC AND MOLECULAR PHYSICS↗

United States Early Career Researchers in Collider Physics input to the European Strategy for Particle Physics Update

This document represents a contribution of the United States early career collider physics community to the 2025--2026 update to the European Strategy for Particle Physics. Preferences with regard to different future collider options and R&D priorities were assessed via a survey. The early career community was defined as anyone who is a graduate student, postdoctoral researcher, untenured faculty member, or research scientist under 40 years of age. In total, 105 participants responded to the survey between February and March 10th, 2025. Questions were formulated primarily to gauge the enthusiasm and preferences for different collider options in line with the recommendations of the United States' P5 report, relevant to the European Strategy Update.

43 PARTICLE ACCELERATORS↗

Determination of Functional Capabilities, the Level of Physical Performance and the State of Main Physiological Body Systems in the First Hours after the Accomplishment of Long-term Space Flights ("Field Test")

Long-term stay in weightlessness is accompanied by alterations in the activity of main physiological body systems including sensory-motor, skeletal-muscular disturbances and cardiovascular deconditioning. However, up to now, there are no data on the state and level of functional performance of cosmonauts/astronauts directly after flight, nor are there data to help define the dynamic recovery of functional characteristics and work efficiency which are greatly needed to provide the safety and planning of their activity once they reach space objects. The Russian and American scientists are currently engaged in a joint experiment known as the "Field Test" with the goal of studying the functional performance and the state of main physiological body systems directly after landing and their temporal recovery dynamics. The functional performance is identified during the test by temporal characteristics of the movements of spatial translation, the stability of the vertical stance for 3.5 min, and the kinematic characteristics of walking - non-complicated and complicated. The following characteristics are identified as physiological characteristics of the test: a) orthostatic tolerance during stand test, b) back muscle tone; c) vertical stability - by characteristics of the correction responses to unexpected perturbations of the vertical stance, and d) support reactions during the performance of the full battery of tests. To date, a pilot version of the "Field Test" has been conducted with participation from four Russian cosmonauts. The results of studies have shown that in 1 - 5 hours after landing the functional abilities of the cosmonauts are considerably reduced. All the test movements at this time are considerably slower than preflight and the more complicated the task is, the greater significant reduction in orthostatic tolerance: during the first test that occurs 1 - 5 hours after landing. two of four cosmonauts declined to continue the task after the orthostatic test (one of them did not wear the anti-G suit "Centaurus" during testing). Blood pressure during moving out of prone posture to vertical stance in one of the cosmonauts and of sitting to standing position in the other dropped to the precollapse level. The results of the studies have confirmed the feasibility, the usefulness and the safety of conducting tests as close as possible to the landing. The program of "Field Test" experiment will be continued and extended.

Kozlovskaya, Inesa↗

Non-Hermitian quantum mechanics approach for extracting and emulating continuum physics based on bound-state-like calculations: Detailed description

Here, this work applies a reduced basis method to study the continuum physics of a finite quantum system—either few or many-body. Specifically, I develop reduced-order models, or emulators, for the underlying inhomogeneous Schrödinger equation and train the emulators against the equation's bound-state-like solutions at complex energies. The emulators rapidly and accurately interpolate and extrapolate the matrix elements of the Hamiltonian resolvent operator (Green's function) across a parameter space that includes both complex energy and other real-valued physical inputs in the Schrödinger equation. The spectra, discretized and compressed as the result of emulation, and the associated resolvent matrix elements (or amplitudes), have the defining characteristics of non-Hermitian quantum mechanics calculations, featuring complex eigenenergies with negative imaginary parts and branch cuts moved below the real axis in the complex energy plane. Therefore, one now has a method that extracts continuum physics from bound-state-like calculations and emulates those extractions in the input parameter space. Building on a prior Letter [Zhang, Phys. Rev. Lett. 135, 242501 (2025)], this article provides the full theoretical details, a comprehensive analysis of the method's performance, and a brief discussion of how it can be coupled with existing continuum approaches to perform emulations in their input parameter spaces.

ab initio calculations↗

Multi-Area Distribution System State Estimation Using Decentralized Physics-Aware Neural Networks

The development of active distribution grids requires more accurate and lower computational cost state estimation. In this paper, the authors investigate a decentralized learning-based distribution system state estimation (DSSE) approach for large distribution grids. The proposed approach decomposes the feeder-level DSSE into subarea-level estimation problems that can be solved independently. The proposed method is decentralized pruned physics-aware neural network (D-P2N2). The physical grid topology is used to parsimoniously design the connections between different hidden layers of the D-P2N2. Monte Carlo simulations based on one-year of load consumption data collected from smart meters for a three-phase distribution system power flow are developed to generate the measurement and voltage state data. The IEEE 123-node system is selected as the test network to benchmark the proposed algorithm against the classic weighted least squares and state-of-the-art learning-based DSSE approaches. Numerical results show that the D-P2N2 outperforms the state-of-the-art methods in terms of estimation accuracy and computational efficiency.

24 POWER TRANSMISSION AND DISTRIBUTION↗