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DOE OSTI2015

Standoff Human Identification Using Body Shape

The ability to identify individuals is a key component of maintaining safety and security in public spaces and around critical infrastructure. Monitoring an open space is challenging because individuals must be identified and re-identified from a standoff distance nonintrusively, making methods like fingerprinting and even facial recognition impractical. We propose using body shape features as a means for identification from standoff sensing, either complementing other identifiers or as an alternative. An important challenge in monitoring open spaces is reconstructing identifying features when only a partial observation is available, because of the view-angle limitations and occlusion or subject pose changes. To address this challenge, we investigated the minimum number of features required for a high probability of correct identification, and we developed models for predicting a key body feature—height—from a limited set of observed features. We found that any set of nine randomly selected body measurements was sufficient to correctly identify an individual in a dataset of 4426 subjects. For predicting height, anthropometric measures were investigated for correlation with height. Their correlation coefficients and associated linear models were reported. These results—a sufficient number of features for identification and height prediction from a single feature—contribute to developing systems for standoff identification when views of a subject are limited.

Matzner, Shari↗

DOE OSTI2017

Uncertainty analysis of wavelet-based feature extraction for isotope identification on NaI gamma-ray spectra

Low-resolution isotope identifiers are widely deployed for nuclear security purposes, but these detectors currently demonstrate problems in making correct identifications in many typical usage scenarios. While there are many hardware alternatives and improvements that can be made, performance on existing low resolution isotope identifiers should be able to be improved by developing new identification algorithms. We have developed a wavelet-based peak extraction algorithm and an implementation of a Bayesian classifier for automated peak-based identification. The peak extraction algorithm has been extended to compute uncertainties in the peak area calculations. To build empirical joint probability distributions of the peak areas and uncertainties, a large set of spectra were simulated in MCNP6 and processed with the wavelet-based feature extraction algorithm. Kernel density estimation was then used to create a new component of the likelihood function in the Bayesian classifier. Furthermore, identification performance is demonstrated on a variety of real low-resolution spectra, including Category I quantities of special nuclear material.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2024

Efficient species identification for Pacific salmon genetic monitoring programs

Abstract Genetic monitoring of Pacific salmon in the Columbia River basin provides crucial information to fisheries managers that is otherwise challenging to obtain using traditional methods. Monitoring programs such as genetic stock identification (GSI) and parentage‐based tagging (PBT) involve genotyping tens of thousands of individuals annually. Although rare, these large sample collections inevitably include misidentified species, which exhibit low genotyping success on species‐specific Genotyping‐in‐Thousands by sequencing (GT‐seq) panels. For laboratories involved in large‐scale genotyping efforts, diagnosing non‐target species and reassigning them to the appropriate monitoring program can be costly and time‐consuming. To address this problem, we identified 19 primer pairs that exhibit consistent cross‐species amplification among salmonids and contain 51 species informative variants. These genetic markers reliably discriminate among 11 salmonid species and two subspecies of Cutthroat Trout and have been included in species‐specific GT‐seq panels for Chinook Salmon, Coho Salmon, Sockeye Salmon, and Rainbow Trout commonly used for Pacific salmon genetic monitoring. The majority of species‐informative amplicons (16) were newly identified from the four existing GT‐seq panels, thus demonstrating a low‐cost approach to species identification when using targeted sequencing methods. A species‐calling script was developed that is tailored for routine GT‐seq genotyping pipelines and automates the identification of non‐target species. Following extensive testing with empirical and simulated data, we demonstrated that the genetic markers and accompanying script accurately identified species and are robust to missing genotypic data and low‐frequency, shared polymorphisms among species. Finally, we used these tools to identify Coho Salmon incidentally caught in the Columbia River Chinook Salmon sport fishery and used PBT to determine their hatchery of origin. These molecular and computing resources provide a valuable tool for Pacific salmon conservation in the Columbia River basin and demonstrate a cost‐effective approach to species identification for genetic monitoring programs.

Robinson, Zachary L.↗

DOE OSTI2015

MO-AB-BRA-04: Correct Identification of Low-Attenuation Intracranial Hemorrhage and Calcification Using Dual-Energy Computed Tomography in a Phantom System

Purpose: Intracranial hemorrhage and calcification with Single-Energy CT (SECT) attenuation below 100HU cannot be reliably identified using currently clinically available means. Calcification is typically benign but hemorrhage can carry a risk of intracranial bleeding and contraindicate use of anticoagulant therapies. A biologically-relevant phantom was used to investigate identification of unknown intracranial lesions using dual-energy CT (DECT) as a verification of prior lesion differentiation results. Methods: Prior phantom work investigating calcification and hemorrhage differentiation resulted in 3D-DECT raw data (water density, calcium density, 68keV) for a range of DECT protocol variations: image thicknesses (1.25, 2.5, 3.75, 5mm), CTDIvol (36.7 to 132.6mGy) and reconstruction algorithms (Soft, Standard, Detail). Acquisition-specific raw data were used to create a plane of optimal differentiation based on the geometric bisector of 3D-linear regression of the two lesion distributions. Verification hemorrhage and calcification lesions, ranging in size from 0.5 to 1.5cm, were created at varying attenuation from 50 to 100HU. Lesions were inserted into a biologically-relevant brain phantom and scanned using SECT (3.75mm images, Standard, 67mGy) and a range of DECT protocols (3.75mm images, Standard, [67, 105.6, 132.6mGy]). 3D-DECT data were collected and blinded for analysis. The 3D-DECT distribution of the lesion was then compared to the acquisition-matched geometric bisector plane and the mean lesion value’s position relative to the plane, indicating lesion identity, and the percentage of voxels on the identified side of the plane, indicating identification confidence, were derived. Results: 98% of the 120 lesions investigated were identified correctly as hemorrhage or calcification. 74% were identified with greater than 80% confidence. Increases in CTDIvol and lesion diameter were associated with increased identification confidence. Conclusion: Intracranial lesions of unknown etiology were identified with 80% confidence for 74% of lesions investigated. These phantom data suggest that the identification of intracranial lesions below 100HU is clinically feasible using DECT. This research was conducted at the MD Anderson Center for Advanced Biomedical Imaging in-part with equipment support from General Electric Healthcare.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2021

Muon reconstruction and identification efficiency in ATLAS using the full Run 2 $pp$ collision data set at $\sqrt{s}=13$ TeV

This article documents the muon reconstruction and identification efficiency obtained by the ATLAS experiment for 139 fb$^{-1}$ of $pp$ collision data at $\sqrt{s}=13$ TeV collected between 2015 and 2018 during Run 2 of the LHC. The increased instantaneous luminosity delivered by the LHC over this period required a reoptimisation of the criteria for the identification of prompt muons. Improved and newly developed algorithms were deployed to preserve high muon identification efficiency with a low misidentification rate and good momentum resolution. The availability of large samples of $Z\to\mu\mu$ and $J/\psi\to\mu\mu$ decays, and the minimisation of systematic uncertainties, allows the efficiencies of criteria for muon identification, primary vertex association, and isolation to be measured with an accuracy at the per-mille level in the bulk of the phase space, and up to the percent level in complex kinematic configurations. Excellent performance is achieved over a range of transverse momenta from 3 GeV to several hundred GeV, and across the full muon detector acceptance of $|\eta|<2.7$.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2019

Benchmark Algorithm for RadioNuclide Identification v1.0

Benchmark Algorithm for Radio-Nuclide Identification (BARNI) is an automatic radionuclide identification tool for use with gamma-ray spectra. BARNI is designed to serve as a comparative tool for commercial vendor algorithms, such as those found in RadioIsotope Identification Devices (RIID). The tool incorporates an automated training routine allowing BARNI's classifier to be trained for a variety of detectors. The identification algorithm uses a peak search, the results of which are used to build features that are subsequently used for training a classifier. The user provided spectral templates allow BARNI to be trained for any detector of the user's choice. Is

NELSON, KARLE.↗

DOE OSTI2018

A framework for the identification of full-field structural dynamics using sequences of images in the presence of non-ideal operating conditions

Recent developments in the ability to automatically and efficiently extract natural frequencies, damping ratios, and full-field mode shapes from video of vibrating structures has great potential for reducing the resources and time required for performing experimental and operational modal analysis at very high spatial resolution. Furthermore, these techniques have the added advantage that they can be implemented remotely and in a non-contact fashion. Emerging full-field imaging techniques therefore have potential to allow the identification of the modal properties of structures in regimes that used to be challenging. For instance, these techniques suggest that the high spatial resolution structural identification could be performed on an aircraft during flight using a ground or aircraft-based imager. They also have the potential to identify the dynamics of microscopic systems. In order to realize this capability it will be necessary to develop techniques that can extract full-field structural dynamics in the presence of non-ideal operating conditions. In this work, we develop a framework for the deployment of emerging algorithms that allow the automatic extraction of high-resolution, full-field modal parameters in the presence of non-ideal operating conditions. One of the most notable non-ideal operating conditions is the rigid body motion of both the structure being measured as well as the imager performing the measurement. We demonstrate an instantiation of the framework by showing how it can be used to address, in-plane, translational, rigid body motion. The development of a frame-to-frame keypoint–based technique for identifying full-field structural dynamics in the presence of either rigid body motion is presented and demonstrated in the context of the framework for the deployment of full-field structural identification techniques in the presence of non-ideal operating conditions. It is expected that this framework will ultimately help enable the collection of full-field structural dynamics using measurement platforms including unmanned aerial vehicles, robotic telescopes, satellites, imagers mounted in high-vibration environments (seismic, industrial, harsh weather), characterization of microscopic structures, and human-carried imagers. If imager-based structural identification techniques mature to the point that they can be used in non-ideal field conditions, it could open up the possibility that the structural health monitoring community will be able to think beyond monitoring individual structures, to full-field structural integrity monitoring at the city scale.

Dasari, Sudeep↗

DOE OSTI2023

Genetic identification of avian samples recovered from solar energy installations

Renewable energy production and development will drastically affect how we meet global energy demands, while simultaneously reducing the impact of climate change. Although the possible effects of renewable energy production (mainly from solar- and wind-energy facilities) on wildlife have been explored, knowledge gaps still exist, and collecting data from wildlife remains (when negative interactions occur) at energy installations can act as a first step regarding the study of species and communities interacting with facilities. In the case of avian species, samples can be collected relatively easily (as compared to other sampling methods), but may only be able to be identified when morphological characteristics are diagnostic for a species. Therefore, many samples that appear as partial remains, or “feather spots”—known to be of avian origin but not readily assignable to species via morphology—may remain unidentified, reducing the efficiency of sample collection and the accuracy of patterns observed. To obtain data from these samples and ensure their identification and inclusion in subsequent analyses, we applied, for the first time, a DNA barcoding approach that uses mitochondrial genetic data to identify unknown avian samples collected at solar facilities to species. We also verified and compared identifications obtained by our genetic method to traditional morphological identifications using a blind test, and discuss discrepancies observed. Our results suggest that this genetic tool can be used to verify, correct, and supplement identifications made in the field and can produce data that allow accurate comparisons of avian interactions across facilities, locations, or technology types. We recommend implementing this genetic approach to ensure that unknown samples collected are efficiently identified and contribute to a better understanding of wildlife impacts at renewable energy projects.

14 SOLAR ENERGY↗

DOE OSTI2023

Distribution System Model Calibration for GMLC 3.3.3 "Incipient Failure Identification for Common Grid Asset Classes" - Project Summary

Distribution system model calibration is a key enabling task for incipient failure identification within the distribution system. This report summarizes the work and publications by Sandia National Laboratories on the GMLC project titled “Incipient Failure Identification for Common Grid Asset Classes”. This project was a joint effort between Sandia National Laboratories, Lawrence Livermore National Laboratory, National Energy Technology Laboratory, and Oak Ridge National Laboratory. The included work covers distribution system topology identification, transformer groupings, phase identification, regulator and tap position estimation, and the open-source release and implementation of the developed algorithms.

24 POWER TRANSMISSION AND DISTRIBUTION↗

DOE OSTI2026

Scientific Discovery with Physics-Informed System Identification (Abbreviated Report)

My fellowship research focused on making physics-based simulations faster and more useful through machine learning. Many problems in science and engineering are governed by partial differential equations, but high-fidelity simulations are often too expensive to run repeatedly. I worked on improving Latent Space Dynamics Identification (LaSDI), a reduced-order modeling framework that compresses large simulation data sets into a smaller representation and then learns how that representation evolves over time. The motivation was to develop reduced models that remain accurate for more challenging systems, especially when predictions must remain reliable over long time intervals or when the underlying dynamics are more complicated than standard methods can easily handle. I also contributed to related work on Quandary, a high-performance software effort for simulation and control of open quantum systems, before focusing primarily on Latent Space Dynamics Identification methods. The main outcomes of the fellowship were two new algorithms (both of which were published), Rollout-LaSDI and Higher-Order LaSDI, together with supporting work on multi-stage Latent Space Dynamics Identification. Rollout-LaSDI improved long-term prediction by training the model to stay accurate over extended time horizons, and Higher-Order LaSDI broadened the method so it could model systems with higher-order time dynamics. My contributions to multistage Latent Space Dynamics Identification also helped show that its later training stages could be simplified without losing effectiveness, and that this behavior held across different model architectures and training strategies. Taken together, these advances improved the accuracy, flexibility, and practical value of reduced-order modeling tools for computational science.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2017

System Identification of a Heaving Point Absorber: Design of Experiment and Device Modeling

Empirically based modeling is an essential aspect of design for a wave energy converter. Empirically based models are used in structural, mechanical and control design processes, as well as for performance prediction. Both the design of experiments and methods used in system identification have a strong impact on the quality of the resulting model. This study considers the system identification and model validation process based on data collected from a wave tank test of a model-scale wave energy converter. Experimental design and data processing techniques based on general system identification procedures are discussed and compared with the practices often followed for wave tank testing. The general system identification processes are shown to have a number of advantages, including an increased signal-to-noise ratio, reduced experimental time and higher frequency resolution. The experimental wave tank data is used to produce multiple models using different formulations to represent the dynamics of the wave energy converter. These models are validated and their performance is compared against one another. While most models of wave energy converters use a formulation with surface elevation as an input, this study shows that a model using a hull pressure measurement to incorporate the wave excitation phenomenon has better accuracy.

13 HYDRO ENERGY↗

DOE OSTI2020

Sparse and Random Sampling Techniques for High-Resolution, Full-Field, BSS-Based Structural Dynamics Identification from Video

Video-based techniques for identification of structural dynamics have the advantage that they are very inexpensive to deploy compared to conventional accelerometer or strain gauge techniques. When structural dynamics from video is accomplished using full-field, high-resolution analysis techniques utilizing algorithms on the pixel time series such as principal components analysis and solutions to blind source separation the added benefit of high-resolution, full-field modal identification is achieved. An important property of video of vibrating structures is that it is particularly sparse. Typically video of vibrating structures has a dimensionality consisting of many thousands or even millions of pixels and hundreds to thousands of frames. However the motion of the vibrating structure can be described using only a few mode shapes and their associated time series. As a result, emerging techniques for sparse and random sampling such as compressive sensing should be applicable to performing modal identification on video. This work presents how full-field, high-resolution, structural dynamics identification frameworks can be coupled with compressive sampling. The techniques described in this work are demonstrated to be able to recover mode shapes from experimental video of vibrating structures when 70% to 90% of the frames from a video captured in the conventional manner are removed.

47 OTHER INSTRUMENTATION↗

DOE OSTI2016

Emerging New Strategies for Successful Metabolite Identification in Metabolomics

NMR is a very powerful tool for the identification of known and unknown (or unnamed) metabolites in complex mixtures as encountered in metabolomics. Known compounds can be reliably identified using 2D NMR methods, such as 13C-1H HSQC, for which powerful web servers with databases are available for semi-automated analysis. For the identification of unknown compounds, new combinations of NMR with MS have been developed recently that make synergistic use of the mutual strengths of the two techniques. The use of chemical additives to the NMR tube, such as reactive agents, paramagnetic ions, or charged silica nanoparticles, permit the identification of metabolites with specific physical chemical properties. In the following sections, we give an overview of some of the recent advances in metabolite identification and discuss remaining challenges.

Bingol, Ahmet K.↗

DOE OSTI2021

Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation

Viruses influence global patterns of microbial diversity and nutrient cycles. Though viral metagenomics (viromics), specifically targeting dsDNA viruses, has been critical for revealing viral roles across diverse ecosystems, its analyses differ in many ways from those used for microbes. To date, viromics benchmarking has covered read pre-processing, assembly, relative abundance, read mapping thresholds and diversity estimation, but other steps would benefit from benchmarking and standardization. Here we use in silico-generated datasets and an extensive literature survey to evaluate and highlight how dataset composition (i.e., viromes vs bulk metagenomes) and assembly fragmentation impact (i) viral contig identification tool, (ii) virus taxonomic classification, and (iii) identification and curation of auxiliary metabolic genes (AMGs). The in silico benchmarking of five commonly used virus identification tools show that gene-content-based tools consistently performed well for long (≥3 kbp) contigs, while k -mer- and blast-based tools were uniquely able to detect viruses from short (≤3 kbp) contigs. Notably, however, the performance increase of k -mer- and blast-based tools for short contigs was obtained at the cost of increased false positives (sometimes up to ~5% for virome and ~75% bulk samples), particularly when eukaryotic or mobile genetic element sequences were included in the test datasets. Furthermore, for viral classification, variously sized genome fragments were assessed using gene-sharing network analytics to quantify drop-offs in taxonomic assignments, which revealed correct assignations ranging from ~95% (whole genomes) down to ~80% (3 kbp sized genome fragments). A similar trend was also observed for other viral classification tools such as VPF-class, ViPTree and VIRIDIC, suggesting that caution is warranted when classifying short genome fragments and not full genomes. Finally, we highlight how fragmented assemblies can lead to erroneous identification of AMGs and outline a best-practices workflow to curate candidate AMGs in viral genomes assembled from metagenomes. Together, these benchmarking experiments and annotation guidelines should aid researchers seeking to best detect, classify, and characterize the myriad viruses ‘hidden’ in diverse sequence datasets.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS1974

Identification of aircraft stability and control parameters using multilevel, hierarchical estimation

Previous attempts to identify aircraft stability and control derivatives from flight test data, using three-degrees-of-freedom (3-DOF) longitudinal or lateral-directional perturbation-equations-of-motion models, suffer from the disadvantage that the coupling between the longitudinal and lateral-directional dynamics has been ignored. In this paper the identification of aircraft stability parameters is accomplished using a more accurate 6-DOF model which includes this coupling. Hierarchical system identification theory is used to reduce the computational effort involved. The 6-DOF system of equations is decomposed into two 3-DOF subsystems, one for the longitudinal dynamics and the other for the lateral-directional dynamics. The two subsystem parameter identification processes are then coordinated in such a way that the overall system parameter identification problem is solved.

Fry, C. M.↗

NASA NTRS1975

Crop Identification Technolgy Assessment for Remote Sensing (CITARS). Volume 1: Task design plan

A plan for quantifying the crop identification performances resulting from the remote identification of corn, soybeans, and wheat is described. Steps for the conversion of multispectral data tapes to classification results are specified. The crop identification performances resulting from the use of several basic types of automatic data processing techniques are compared and examined for significant differences. The techniques are evaluated also for changes in geographic location, time of the year, management practices, and other physical factors. The results of the Crop Identification Technology Assessment for Remote Sensing task will be applied extensively in the Large Area Crop Inventory Experiment.

Hall, F. G.↗

NASA NTRS1978

Estimation of longitudinal aircraft characteristics using parameter identification techniques

This study compares the results from different parameter identification methods used to determine longitudinal aircraft characteristics from flight data. In general, these comparisons have found that the estimated short-period dynamics (natural frequency, damping, transfer functions) are only weakly affected by the type of identification method, however, the estimated aerodynamic coefficients may be strongly affected by the type of identification method. The estimated values for aerodynamic coefficients were found to depend upon the type of math model and type of test data used with each of the identification methods. The use of fairly complete math models and the use of long data lengths, combining both steady and nonsteady motion, are shown to provide aerodynamic coefficient values that compare favorably with the results from other testing methods such as steady-state flight and full-scale wind-tunnel experiments.

Wingrove, R. C.↗

NASA NTRS1981

Nonparametric identification of a class of nonlinear close-coupled dynamic systems

A nonparametric identification technique for the identification of close coupled dynamic systems with arbitrary memoryless nonlinearities is presented. The method utilizes noisy recorded data (acceleration, velocity and displacement) to identify the restoring forces in the system. The masses in the system are assumed to be known (or fairly well estimated from the design drawings). The restoring forces are expanded in a series of orthogonal polnomials and the coefficients of these polynomial expansions are obtained by using least square fit method. A particularly simple and computationally efficient method is proposed for dealing with separable restoring forces. The identified results are found to be relatively insensitive to measurement noise. An analysis of the effects of measurement noise on the quality of the estimates is given. The computations are shown to be relatively quick (when compared say to the Wiener identification method) and the core storage required relatively small, making the method suitable for onboard identification of large space structures.

Udwadia, F. E.↗