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At least 253 records · Page 14

TPSAS-NF1676L-19067-DND

We discuss methods to separate absorbing carbonaceous aerosols and dust in the AERONET database, including using the imaginary refractive index and the absorbing Angstrom exponent (AAE). Carbonaceous aerosols can be separated from dust in imaginary refractive index space because 95% of biomass burning aerosols have imaginary indices greater than 0.0042 at the 675--1020 nm wavelengths, and 95% of dust has imaginary refractive indices of less than 0.0042 at the 675--1020 nm wavelengths. Alternatively, about 25% of the AAE histogram for "pure dust" overlaps with 75% of the biomass burning AAE histogram, and unique identification of carbonaceous and dust species through AAE analysis is not possible for data in the overlap region.

Greg Schuster↗

Cloud-Precipitation Hybrid Regimes and their Projection onto IMERG Precipitation Data

We extend and enhance the concept of the Cloud Regimes (CRs) developed from two-dimensional joint histograms of cloud optical thickness and cloud top pressure from the Moderate Resolution Imaging Spectroradiometer (MODIS), by adding precipitation information in order to better understand cloud-precipitation relationships. Taking advantage of the high-resolution Integrated Multi-satellitE Retrievals for GPM (IMERG) precipitation dataset, cloud-precipitation “hybrid” regimes are derived by implementing the k-means clustering algorithm with advanced initialization and objective measures to determine the most optimal clusters. By expressing precipitation rates within 1-degree grid cell as histograms and making choices on the relative weight of cloud and precipitation, we could obtain several editions of hybrid cloud-precipitation regimes (CPRs), and examine their characteristics. In the deep tropics, when precipitation is weighted weakly, the cloud part of the hybrid entroids resembles the centroid of cloud-only regimes, but still tightens the cloud-precipitation relationship by decreasing the precipitation variability of each regime. As precipitation weight progressively increases, the shape of the cloudy part of the hybrid centroids becomes blunter, while the precipitation part of the centroids sharpens. In the case where cloud and precipitation are weighted equally, the CPRs representing high clouds with intermediate to heavy precipitation exhibit distinct features in the precipitation parts of the centroids, which allows us to project them onto the 30-minly IMERG domain. Such a projection can be used to overcome the temporal sparseness of MODIS cloud observations, which leads to great application potential for various convection-focused studies, including diurnal cycle analysis.

cloud-precipitation↗

Evaluation of Clouds, Radiation, and Precipitation in CMIP6 Models Using Global Weather States Derived from ISCCP-H Cloud Property Data

A clustering methodology is applied to cloud optical depth cloud top pressure (TAU-PC) histograms from the new, 1-degree resolution, ISCCP-H dataset, to derive an updated global Weather State (WS) dataset. Then, PC-TAU histograms from current-climate CMIP6 model simulations are assigned to the ISCCP-H WSs along with their concurrent radiation and precipitation properties, to evaluate model cloud, radiation, and precipitation properties in the context of the Weather States. The new ISCCP-H analysis produces WSs that are very similar to those previously found in the lower resolution ISCCP-D dataset. The main difference lies in the splitting of the ISCCP-D thin stratocumulus WS between the ISCCP-H shallow cumulus and stratocumulus WSs, which results in the reduction by one of the total WS number. The evaluation of the CMIP6 models against the ISCCP-H Weather States, shows that, in the ensemble mean, the models are producing an adequate representation of the frequency and geographical distribution of the WSs, with measurable improvements compared to the WSs derived for the CMIP5 ensemble. However, the frequency of shallow cumulus clouds continues to be underestimated, and, in some WSs the good agreement of the ensemble mean with observations comes from averaging models that significantly overpredict and underpredict the ISCCP-H WS frequency. In addition, significant biases exist in the internal cloud properties of the model WSs, such as the model underestimation of cloud fraction in middle-top clouds and secondarily in midlatitude storm and stratocumulus clouds, that result in an underestimation of cloud SW cooling in those regimes.

Clouds↗

Shock-Layer Radiation Insights Available Through Flowfield Property Binning

This paper introduces a method for assessing similarity between available shock-layer radiation measurements and the radiative heating to a vehicle of interest. This method will be referred to as the flowfield property binning (FPB) approach. The challenge in developing this approach is that radiometer measurements from a surface normal line of sight, observed radiation measurements of the entire shock-layer from a distance, or measured shock-tube nonequilibrium profiles are notably different geometrically than the radiative flux to a vehicle surface. Therefore, the relative contributions of various regions of the shock-layer to the measurement, and how these relative contributions compare with the radiative heating to a vehicle of interest, are unclear. By tracking the radiation contribution from each flowfield location, and then grouping this contribution based on two local flowfield properties, these geometric differences are removed. This provide a two dimensional group, or bin, distribution that represents the radiation environment in the same format for various types of radiation simulations, such as observed radiation or radiative flux to a vehicle surface. In the limits of optically-thin radiation transport and thermochemical equilibrium flow, the choice of pressure and temperature as the binning flowfield properties is shown to provide a bin distribution that uniquely defines the radiation simulation. This concept is found to be sufficient for establishing similarity between two cases even when the optically-thin radiation transport and thermochemical equilibrium assumptions are not satisfied. A simple metric of comparison between bin distributions from different cases is provided by the histogram intersection algorithm. This algorithm results in a histogram intersection factor (H) between 0 and 1, which represents the fraction of the radiation that is similar between the two cases. Therefore, if H evaluated between bin distributions for two completely different radiation problems is near 1, then they represent essentially the same radiation problem. This means that they depend on the same weighting of various radiation modeling parameters evaluated at the same pressure and temperature. If one of these cases agrees well with a radiation measurement, then the matching bin distributions provide justification for applying this experimental validation to the other case. Even for H values as low as 0.2, the measurement case could be considered relevant if there are no other useful measurements. This approach allows observed radiation measurements to directly inform radiative heating simulations, which allows NASA’s past and future investments in observed radiation measurements to directly inform the radiative heating uncertainty or margins for future vehicle design. This FPB approach is also used to determine shock-tube conditions for informing backshell radiative heating simulations, where the normal shock velocity and Lagrangian time from the shock is used for the binning variables instead of pressure and temperature.

Shock Layer Radiation↗

Assessment of Two Stochastic Cloud Subcolumn Generators Using Observed Fields of Vertically Resolved Cloud Extinction

We evaluate two stochastic subcolumn generators used in GCMs to emulate subgrid cloud variability enabling comparisons with satellite observations and simulations of certain physical processes. Our evaluation necessitated the creation of a reference observational dataset that resolves horizontal and vertical cloud variability. The dataset combines two CloudSat cloud products that resolve two-dimensional cloud optical depth variability of liquid, ice, and mixed phase clouds when blended at ~200 m vertical and ~ 2 km horizontal scales. Upon segmenting the dataset to individual “scenes”, mean profiles of the cloud fields are passed as input to generators that produce scene-level cloud subgrid variability. The assessment of generator performance at the scale of individual scenes and in a mean sense is largely based on inferred joint histograms that partition cloud fraction within predetermined combinations of cloud top pressure –cloud optical thickness ranges. Our main finding is that both generators tend to underestimate optically thin clouds, while one of them also tends to overestimate some cloud types of moderate and high optical thickness. Associated radiative flux errors are also calculated by applying a simple transformation to the cloud fraction histogram errors, and are found to approach values almost as high as 3 Wm-2 for the cloud radiative effect in the shortwave part of the spectrum.

cloud variability↗

In-Lab Rapid Analytical Detection of Lunar Volatiles By Universal Gas Analyzer With Comparison to GC-MS System

Introduction: The curation of permanently shadowed regions (PSRs) [1] on the lunar surface is centered around studies based upon the observed volatiles from the LCROSS mission [2]. The rapid detection of important volatile gases and vapors present in planetary bodies and Astromaterials by a standalone analytical device is an area of intense research interest in our group and Planetary Exploration & Astromaterials Research Laboratory (PEARL) facility and this work is relevant to the future preparation of viable lunar simulants for testing curation efforts down the road. The groundbreaking results obtained from the LCROSS Mission [2] open the requirements for the direct detection of volatiles present in regolith materials collected from the lunar surface. The mass spectrometry of volatile chemicals is a general technique that utilizes a set of instruments that creates charged ions from a gaseous chemical species and measures the intensities vs. mass-to-charge ratio (m/z) [3]. In this context, we discuss in-lab experimental results and procedures for rapid qualitative analysis of main LCROSS volatiles (water, H2S, NH3, CO2, and CH3OH) by a Universal Gas Analyzer (UGA) instrument. Additionally, the instrument performance was evaluated by measuring the isotopic abundance ratio of atmospheric Ar-40 to Ar-36 present in room air since, argon is a relevant gas in planetary studies as it can provide an insight and reference point to isotope studies [4]. Additional, cross comparisons were attempted and made between the two instruments to develop a robust analytical technique by comparing mass spectral data for H2S headspace samples with a Trace-1310/ ISQ 7000 (ThermoFisher Scientific.) GC-MS system. Background: The benchtop UGA System is equipped with an SRS UGA 300 quadrupole mass spectrometer designed and built by Stanford Research Systems [5]. This system can be configured for several types of gaseous chemical analysis. The inlet line continuously samples gases at low flow rates (several milliliters per minute) through a capillary limiting the intake pressure making the instrument ideal for online analysis of select gases and/or room atmosphere. Moreover, in our current UGA system, a change in composition at the inlet can be detected in about 200 milliseconds and a complete spectrum is acquired (for a range of 1-100 amu) in under 45 sec with masses measured at rates up to 25 msec per point [5]. This system provides a quick upstream analytical data that we can then compare to results obtained by our GC-MS system. Sample Preparation: Small volume (2-4 mL) of analyte sample was taken in a 10 mL glass vial and sealed with a crimped cap and purged with pure Ar or N2 gas to displace air from the top. The headspace sample was scanned by the UGA instrument at analog, histogram, and pressure vs. time modes. The isotopic abundance ratio for 40Ar-to-36Ar was estimated by measuring partial pressure vs. time scans and setting the mass at 40 and 36 respectively. Results and Discussions: In this work, we have investigated the applicability of the UGA system by qualitative analysis of a series of LCROSS volatiles measured individually. Fig. 1 demonstrates a set of vertically offset spectra for the partial pressures measured as a function of mass-to-charge (m/z) ratios. The average acquisition time for each spectrum was less than a minute suggesting that the UGA system is ideal for quick analysis of geochemical volatiles. For the cross-comparison, we analyzed an H2S headspace sample by a Trace-1310/ISQ-7000 system and compared mass spectral data with previously measured UGA histogram scan data (Fig. 2). In both cases, major peak positions are the same, however, the intensities of fragment ions ([1H132S]+ and [32S]+) are higher for UGA suggesting that the fragment ionization process is stronger in UGA compared to that of GC-MS. To investigate how the integrated area under each chromatogram varies with the headspace sample volume, a set of five H2S headspace samples with increasing volumes was analyzed by the GC-MS system (Fig. 3, inset). A small volume (e.g., 200 to 1000 µL) of H2S/H2O vapor was withdrawn from a 20 mL stock sample vial containing ~5 mL of 0.4% H2S in water by a gas-tight syringe and added to another 20 mL vial filled with argon and analyzed by the GC-MS system. Finally, the UGA detector sensitivity was evaluated by calculating the atmospheric 40Ar-to-36Ar isotopic abundance ratio in room air by running a partial pressure vs. time scan with setting the atomic mass at 40, and 36. Fig. 4(a) shows a ~25 min duration “P vs. time” scan for 40Ar (plot for 36Ar is not shown). The partial pressure values (~100 points) were corrected by subtracting the corresponding background pressure value for 37Ar and utilized to calculate 40Ar-to-36Ar isotopic abundance ratios as shown by Fig. 4b. The average isotopic abundance ratio is ~306 with a 2*STDEV ~13. This abundance ratio is significantly close to the previously reported value of 298.56 [6] and the ratio obtained by our GC-MS system (303 for a UHP grade Ar sample). Conclusions: Our study strongly evidenced that the benchtop UGA system is a valuable analytical tool for the detection of major LCROSS volatiles. The rapid scanning capability, the inexpensiveness of the whole system, and impressive detection sensitivity prove its worthiness as an essential device for advanced geochemical applications. Moreover, cross comparisons with the GC-MS provide important bridges into advanced curatorial efforts into the future. References: [1] Bickel, V.T., et al. (2021) Nat Commun 12, 5607. [2] Colaprete, A., et al. (2010) Science, 330, 463-468. [3] Glavin, D. P. et al. (2012) 2012 IEEE Aerospace Conference, 1-11. [4] Willett, C. D., et al. (2022) Geochimica et Cosmochimica Acta 329, 119-134. [5] Operation Manual and Programming Reference. (2018) Universal gas Analyzers, Stanford Research Systems. [6] Lee, J. Y., et al. (2006) Geochimica et Cosmochimica Acta 70, 4507–4512. Notes: (4 figures are attached with text as shown by the attached file)

Curation↗

BatAnalysis - A Comprehensive Python Pipeline for Swift BAT Survey Analysis

The Swift Burst Alert Telescope (BAT) is a coded aperture gamma-ray instrument with a large field of view that primarily operates in survey mode when it is not triggering on transient events. The survey data consists of eighty-channel detector plane histograms that accumulate photon counts over time periods of at least 5 minutes. These histograms are processed on the ground and are used to produce the survey dataset between 14 and 195 keV. Survey data comprises >90% of all BAT data by volume and allows for the tracking of long term light curves and spectral properties of cataloged and uncataloged hard X-ray sources. Until now, the survey dataset has not been used to its full potential due to the complexity associated with its analysis and the lack of easily usable pipelines. Here, we introduce the BatAnalysis python package , a wrapper for HEASoftpy, which provides a modern, open-source pipeline to process and analyze BAT survey data. BatAnalysis allows members of the community to use BAT survey data in more advanced analyses of astrophysical sources including pulsars, pulsar wind nebula, active galactic nuclei, and other known/unknown transient events that may be detected in the hard X-ray band. We outline the steps taken by the python code and exemplify its usefulness and accuracy by analyzing survey data from the Crab Pulsar, NGC 2992, and a previously uncataloged MAXI Transient. The BatAnalysis package allows for ∼ 18 years of BAT survey to be used in a systematic way to study a large variety of astrophysical sources.

Tyler Parsotan↗

GPCP Version 3.2 Products and Results

The Global Precipitation Climatology Project (GPCP) products address the need for long-term precipitation products that emphasize homogeneity, following Climate Data Record (CDR) principles. The new-generation Version 3.2 provides key improvements over the operational Version 2.3 such as: finer spatial resolution of 0.5°x0.5°; wider geosynchronous infrared estimation (58°N-S) upgraded with the PERSIANN-CDR algorithm; upgraded retrievals from selected passive microwave sensors (GPROF algorithm) that calibrate the IR input; revised intercalibrations of TOVS and AIRS data (used at high latitudes); climatologies based on CloudSat, TRMM, and GPM to provide overall calibration by modern satellite estimates; the latest Global Precipitation Climatology Centre (GPCC) precipitation gauge analyses over land areas; regional modifications to the gauge undercatch correction; and IMERG half-hourly data input to the Daily V3.2 product. We will show sample analyses that demonstrate aspects of the Version 3.2 precipitation record, such as the global climatology, the time series for global land and ocean total precipitation and snowfall, and the time series of tropical land and ocean daily precipitation rate histograms. For selected analyses we will show improvements in both the Monthly and Daily products in Version 3.2 compared to the operational Version 2.3. In particular, the climatological zonal profile of precipitation in the Southern Ocean, extending south of 40°S, improves a suspected artifact in V2.3. Similarly, the Daily histograms over ocean in Version 3.2 lack the jump in the predecessor Version 1.3 Daily over ocean at the start of 2009, although a smaller jump is introduced in June 2014. The presentation will conclude with a prospectus for the future satellites/sensors and community datasets necessary to continue computation of a consistent CDR product on the one hand, while also potentially contributing to improvements in the historical record.

Global Precipitation Measurement↗

U.S. IMERG Status

The U.S. Science Team’s Integrated Multi-satellitE Retrievals for the Global Precipitation Measurement (GPM) mission (IMERG) product provides estimates of surface precipitation rate and related information on a global 0.1° half-hour grid. It is run three times at increasingly longer latency and higher information input to serve different communities. This presentation will briefly summarize the major upgrades included in Version 07. The Goddard Profiling (GPROF) algorithm (applied to passive microwave sensor data from the GPM virtual constellation) and the Combined Radar-Radiometer Algorithm (CORRA) that provide input to IMERG V07 are both improved, and the new Precipitation Estimation from Remotely Sensed Information Using Artificial Neural Networks–Dynamic Infrared Rain Rate (PDIR) algorithm is being applied to infrared data, which employs an additional, warmer infrared temperature threshold than the previous infrared scheme and a deep neural network. V07 has improved bias performance as a result of calibrations that now employ the entire swath widths of CORRA and GPROF GPM Microwave Imager precipitation estimates. As well, time continuity in precipitation features is improved as a result of changes to the Kalman filter that approximately preserve the local histogram of precipitation rates (Scheme for Histogram Adjustment with Ranked Precipitation Estimates in the Neighborhood, or SHARPEN), and that better account for differences in sensor performance. A long-standing bug in the geolocation that shifted grid values 0.1° to the east in the latitude band 70°N-S has been corrected. Other changes in V07 include a hierarchical selection among motion vector sources to address deficiencies in the precipitation propagation near orography, an update to the precipitation phase specification for improved consistency with current inputs, and a renewed effort to implement climatological gauge adjustment to the near-real-time Runs. Early evaluations of V07 IMERG show interesting behavior across the TRMM orbit boost that is highly relevant to the planned orbit boost for the GPM Core observatory.

GPM↗

Spacecraft Floating Potential Measurements for the Wind Spacecraft

Analysis of 8,804,545 electron velocity distribution functions, observed by the Wind spacecraft near 1 au between 2005 January 1 and 2022 January 1, was performed to determine the spacecraft floating potential, ∅ sc . Wind was designed to be electrostatically clean, which helps keep the magnitude of ∅ sc small (i.e., ∼5–9 eV for nearly all intervals) and the potential distribution more uniform. We observed spectral enhancements of ∅ sc at frequencies corresponding to the inverse synodic Carrington rotation period with at least three harmonics. The two-dimensional histogram of ∅ sc versus time also shows at least two strong peaks, with a potential third, much weaker peak. These peaks vary in time, with the intensity correlated with solar maximum. Thus, the spectral peaks and histogram peaks are likely due to macroscopic phenomena like coronal mass ejections (solar cycle dependence) and stream interaction regions (Carrington rotation dependence). The values of ∅ sc are summarized herein and the resulting data set is discussed.

Lynn B Wilson III↗

Calculating Reuse Distance from Source Code

The efficient use of a system is of paramount importance in high-performance computing. Applications need to be engineered for future systems even before the architecture of such a system is clearly known. Static performance analysis that generates performance bounds is one way to approach the task of understanding application behavior. Performance bounds provide an upper limit on the performance of an application on a given architecture. Predicting cache hierarchy behavior and accesses to main memory is a requirement for accurate performance bounds. This work presents our static reuse distance algorithm to generate reuse distance histograms. We then use these histograms to predict cache miss rates. Experimental results for kernels studied show that the approach is accurate.

Cache memory↗

Method and apparatus for detecting dilute concentrations of radioactive xenon in samples of xenon extracted from the atmosphere

A method and apparatus for measuring the concentrations of radioxenon isotopes in a gaseous sample wherein the sample cell is surrounded by N sub-detectors that are sensitive to both electrons and to photons from radioxenon decays. Signal processing electronics are provided that can detect events within the sub-detectors, measure their energies, determine whether they arise from electrons or photons, and detect coincidences between events within the same or different sub-detectors. The energies of detected two or three event coincidences are recorded as points in associated two or three-dimensional histograms. Counts within regions of interest in the histograms are then used to compute estimates of the radioxenon isotope concentrations. The method achieves lower backgrounds and lower minimum detectable concentrations by using smaller detector crystals, eliminating interference between double and triple coincidence decay branches, and segregating double coincidences within the same sub-detector from those occurring between different sub-detectors.

07 ISOTOPE AND RADIATION SOURCES↗

Automatic Surface Defect Detection and Sizing for Superconducting Radio Frequency Cavities using Haar cascades

Serious albeit tiny surface defects can remain on the surface of superconducting radio frequency (SRF) cavities after polishing and cleaning. These defects reduce the efficiency of cavities and often limit the maximum attainable fields. We applied a Haar cascade artificial vision technique for automated identification, counting, and sizing of defects induced on niobium surface by Nb-H precipitates formed at cryogenic temperatures. The defects were counted and sized by a computer program and also counted and measured manually to estimate detection rate and accuracy of sizing. The overall detection rate was 53%, and the overall false positive rate was 29%. The technique that was used to automatically size the features was found to oversize the features, but oversize them consistently, resulting in a size histogram that represents the defect size distribution on the sample. After scaling the histogram data, the average defect area was found to be 90 square micrometers with the standard deviation of 70 square micrometers.

Eremeev, Grigory V.↗

Time-Resolved PIV Measurements of Flow Field at Diffuser Exit Downstream of a Rotating Detonation Combustor

Time-resolved particle image velocimetry at 30 kHz is applied to the exhaust flow field of a RDC system configured with a diffuser geometry and a converging-diverging (CD) nozzle. The RDC is operated with methane fuel and oxygen-enriched air, motivated by power generation applications. The measured flow-field is discretized into axial and non-axial velocity components. Results are shown to characterize the flow-field across a cord length at the exit plane. Instantaneous contours of the two velocity components, and 1D histograms of velocity components, and 2D histograms of total velocity and tilt angle are shown at multiple locations in the flow. Repeatability of the data is evaluated by comparing tests conducted at similar flow rates. Results are presented for a baseline test case, and test cases showing the effect of reactant higher flow rate and CD nozzle geometry. Finally, the results are compared to a previous RDC study without the diffuser to compare the effectiveness of the diffuser and CD nozzle designs in mitigating the flow periodicity at the combustor exit.

03 NATURAL GAS↗

Estimating β eff from static, late-time Feynman neutron noise measurements

The effective delayed neutron fraction, β eff , is a kinematic parameter describing the contribution of delayed neutrons to the effective multiplication factor, $\kappa$ eff , and is of great interest to the nuclear criticality safety community and beyond. In fact, $\kappa$ eff presently must be inferred (as opposed to directly measured) since variables like β eff must be obtained from simulation, reference tables, or a dynamic or pulsed measurement where the assembly of fissile material is perturbed and not in steady state. Several recent works have proposed neutron noise techniques to estimate β eff from static measurements (such as benchmark experiments). This work experimentally investigates an approach based on looking at late-time (up to thousands of seconds) correlated neutrons in Feynman histograms. This work utilizes measurements of weapons grade plutonium and highly enriched uranium to construct late-time Feynman histograms and investigate a proposed methodology of estimating β eff from a fit of the distribution. Data is shown from both He-3 detectors and an organic scintillator array. This work is preliminary in nature, demonstrating some experimental feasibility and proposing improvements for future investigations.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Spherical Kernel Density Estimators For Monte Carlo Radiation Transport Problems

Recently, there has been interest in creating alternatives to histograms (mesh tallies) for estimating spatially-distributed quantities such as scalar flux and reaction rate densities. Kernel Density Estimators (KDEs) are non-parametric estimators that obtain estimates of the underlying distribution at user-defined points without having to specify an underlying mesh, and the uncertainty at those points is independent of the number of tally points used in the simulation. This has led to the investigation of KDEs as an attractive potential alternative to histogram tallies in Monte Carlo radiation transport simulations for reactor physics problems and shielding applications. A KDE was recently created specifically for cylindrical geometries that is capable of producing smooth and accurate estimates of flux and reaction rate densities in reactor physics problems. This work extends the cylindrical KDE and cylindrical Mean Free Path (MFP) KDE to spherical geometries and verifies the spherical KDE on bare and reflected critical benchmark problems.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Online and Offline Data Quality Monitoring for the Mu2e Calorimeter

This thesis presents the design, implementation, and validation of a calorimeter Data Quality Monitoring (DQM) toolchain for the Mu2e experiment at Fermilab. Mu2e searches for charged lepton flavor violation via coherent muon-to-electron conversion in the field of an aluminum nucleus, $\mu^- Al \rightarrow e^-Al$, a process whose observation would constitute clear evidence of physics beyond the Standard Model. Achieving target sensitivity requires stringent control of detector performance and data integrity during acquisition, as subtle issues in readout configuration, data formatting, or electronics behavior can compromise reconstruction and bias downstream analyzes. To address these challenges, this work develops a multi-layer DQM approach spanning both raw data validation and reconstructed digi-level diagnostics. At the low level, a fragment analysis component performs word- and bit-field decoding of calorimeter readout blocks, enabling sanity checks of the expected structure and producing detailed error and integrity statistics useful for commissioning and troubleshooting. At the digi level, the CaloDigiDQM analyzer is implemented within the art framework and transforms each CaloDigiCollection into a structured hierarchy of ROOT histograms designed for fast drill-down diagnostics. The module generates coherent monitoring views at global, disk, board, and channel granularity, including occupancy, waveform-derived features (baseline, RMS, peak amplitude and position), and left-right sensor consistency metrics. Detector-aware channel-to-electronics mapping is performed through the conditions system (CaloDAQMap), ensuring that diagnostics remain aligned with hardware identifiers used in operations. For end-to-end testing without reliance on live DAQ data, a synthetic CaloDigi producer is developed to generate realistic waveforms with controlled noise and pulse shapes. The resulting system supports both offline ROOT-file production and online operation, including optional histogram streaming through otsdaq via ots::HistoSender. This toolchain provides a practical and scalable foundation for calorimeter commissioning and stable data collection, enabling early detection of anomalies and reducing operational risk for Mu2e.

Vakulenko, Mark [Drew U.] (ORCID:0009000276197818)↗

Computing Potential of the Mean Force Profiles for Ion Permeation Through Channelrhodopsin Chimera, C1C2

Umbrella sampling, coupled with a weighted histogram analysis method (US-WHAM), can be used to construct potentials of mean force (PMFs) for studying the complex ion permeation pathways of membrane transport proteins. Despite the widespread use of US-WHAM, obtaining a physically meaningful PMF can be challenging. Here, we provide a protocol to resolve that issue. Then, we apply that protocol to compute a meaningful PMF for sodium ion permeation through channelrhodopsin chimera, C1C2, for illustration.

59 BASIC BIOLOGICAL SCIENCES↗