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At least 253 records · Page 14

Rigorous Ab Initio Quantum Embedding for Quantum Chemistry Using Green’s Function Theory: Screened Interaction, Nonlocal Self-Energy Relaxation, Orbital Basis, and Chemical Accuracy

We present a detailed discussion of the self-energy embedding theory (SEET), which is a quantum embedding scheme allowing us to describe a chosen subsystem very accurately while keeping the description of the environment at a lower level. We apply SEET to molecular examples where our chosen subsystem is made out of a set of strongly correlated orbitals while the weakly correlated orbitals constitute an environment. Consequently, a highly accurate method is used to calculate the self-energy for the system, while a lower-level method is employed to find the self-energy for the environment. Such a self-energy separation is very general, and to make the SEET procedure applicable to multiple systems, a detailed and practical procedure for the evaluation of the system and environment self-energy is necessary. We list all of the intricacies for one of the possible procedures while focusing our discussion on many practical implementation aspects such as the choice of best orbital basis, impurity solver, and many steps necessary to reach chemical accuracy. Finally, on a set of carefully chosen molecular examples, we demonstrate that SEET, which is a controlled, systematically improvable Green’s function method, can be as accurate as established wave function quantum chemistry methods.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Deep Green: Structural and Functional Genomic Characterization of Conserved Unannotated Green Lineage Proteins

Our overall objective is to improve and increase functional and structural predictions for a growing number of plant proteins of unknown structure and function (the Deep Green proteins), and to make our predictive data useful and accessible to the larger research community. The project is divided into five major objectives which include 1) Assembly and curation of Deep Green candidate protein sets; 2) in silico structural and functional predictions and network analyses; 3) assembly and validation of reverse genetic resources in Chlamydomonas reinhardtii (Chlamydomonas); 4) high throughput functional genomics characterization and prioritization in Chlamydomonas; and 5) structural validation of selected candidates and functional validation in two important reference plant species, Arabidopsis thaliana (Arabidopsis) and Setaria viridis (Setaria).

59 BASIC BIOLOGICAL SCIENCES↗

Many-body Green’s function theory for electron-phonon interactions: Ground state properties of the Holstein dimer

We study ground-state properties of a two-site, two-electron Holstein model describing two molecules coupled indirectly via electron-phonon interaction by using both exact diagonalization and self-consistent diagrammatic many-body perturbation theory. The Hartree and self-consistent Born approximations used in the present work are studied at different levels of self-consistency. The governing equations are shown to exhibit multiple solutions when the electron-phonon interaction is sufficiently strong, whereas at smaller interactions, only a single solution is found. The additional solutions at larger electron-phonon couplings correspond to symmetry-broken states with inhomogeneous electron densities. A comparison to exact results indicates that this symmetry breaking is strongly correlated with the formation of a bipolaron state in which the two electrons prefer to reside on the same molecule. The results further show that the Hartree and partially self-consistent Born solutions obtained by enforcing symmetry do not compare well with exact energetics, while the fully self-consistent Born approximation improves the qualitative and quantitative agreement with exact results in the same symmetric case. This together with a presented natural occupation number analysis supports the conclusion that the fully self-consistent approximation describes partially the bipolaron crossover. These results contribute to better understanding how these approximations cope with the strong localizing effect of the electron-phonon interaction.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Instanton dominance over $a_s$ at low momenta from lattice QCD simulations at $N_f=0$, $N_f=2+1$ and $N_f=2+1+1$

We report on an instanton-based analysis of the gluon Green functions in the Landau gauge for low momenta; in particular we use lattice results for αs in the symmetric momentum subtraction scheme (MOM) for large-volume lattice simulations. We have exploited quenched gauge field configurations, Nf = 0, with both Wilson and tree-level Symanzik improved actions, and unquenched ones with Nf = 2 + 1 and Nf = 2 + 1 + 1 dynamical flavors (domain wall and twisted-mass fermions, respectively).We show that the dominance of instanton correlations on the low-momenta gluon Green functions can be applied to the determination of phenomenological parameters of the instanton liquid and, eventually, to a determination of the lattice spacing.We furthermore apply the Gradient Flow to remove short-distance fluctuations. The Gradient Flow gets rid of the QCD scale, ΛQCD, and reveals that the instanton prediction extents to large momenta. For those gauge field configurations free of quantum fluctuations, the direct study of topological charge density shows the appearance of large-scale lumps that can be identified as instantons, giving access to a direct study of the instanton density and size distribution that is compatible with those extracted from the analysis of the Green functions.

Athenodorou, Andreas↗

Evolution of finite viscous disks with time-independent viscosity

We find Green functions for the accretion disk with fixed outer radius and time-independent viscosity. With the Green functions, a viscous evolution of the disk with any initial conditions can be described. Two types of inner boundary conditions are considered: the zero stress tensor and the zero accretion rate. The variable mass inflow at the outer radius can also be included. The well-known exponential decline of the accretion rate is a part of the solution with the inner zero stress tensor. The solution with the zero central accretion rate is applicable to disks around stars whose magnetosphere's boundary exceeds the corotation radius. Using the solution, the viscous evolution of disks in some binary systems can be studied. We apply the solution with zero inner stress tensor to outbursts of short-period X-ray transients during the time around the peak. It is found that for the Kramers’ regime of opacity and the initial surface density proportional to the radius, the rise time to the peak is t{sub rise}≈0.15 r{sub out}{sup 2}/ν{sub out} and the e-folding time of the decay is t{sub exp}≈0.45 r{sub out}{sup 2}/ν{sub out}. Comparison to non-stationary α-disks shows that both models with the same value of viscosity at the outer radius produce similar behavior on the viscous time-scale. For six bursts in X-ray novae, which exhibit fast-rise–exponential-decay and are fitted by the model, we find a way to restrict the turbulent parameter α.

79 ASTRONOMY AND ASTROPHYSICS↗

Simulation of optical response functions in molecular junctions

Here, we discuss theoretical approaches to nonlinear optical spectroscopy of molecular junctions. Optical response functions are derived in a form convenient for the implementation of Green function techniques, and their expressions in terms of pseudoparticle nonequilibrium Green functions are proposed. The formulation allows to account for both intramolecular interactions and hybridization of molecular states with those of contacts. Within a generic model and utilizing two-dimensional optical spectroscopy as an example, the methodology is compared with exact simulations and is shown to work where the traditional Liouville space approach fails.

74 ATOMIC AND MOLECULAR PHYSICS↗

Non-equilibrium tunneling in zigzag graphene nanoribbon break-junction results in spin filtering

Spintronic devices promise new faster and lower energy-consumption electronic systems. Graphene, a versatile material and candidate for next generation electronics, is known to possess interesting spintronic properties. In this paper, by utilizing density functional theory and non-equilibrium green function formalism, we show that Fano resonance can be generated by introducing a break junction in a zigzag graphene nanoribbon (ZGNR). Using this effect, we propose a new spin filtering device that can be used for spin injection. Our theoretical results indicate that the proposed device could achieve high spin filtering efficiency (over 90%) at practical fabrication geometries. Furthermore, our results indicate that the ZGNR break junction lattice configuration can dramatically affect spin filtering efficiency and thus needs to be considered when fabricating real devices. Our device can be fabricated on top of spin transport channel and provides good integration between spin injection and spin transport.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Dynamics of straight vortex filaments in a Bose–Einstein condensate with the Gaussian density profile

The dynamics of interacting quantized vortex filaments in a rotating Bose–Einstein condensate existing in the Thomas–Fermi regime at zero temperature and obeying the Gross–Pitaevskii equation has been considered in the hydrodynamic “nonelastic” approximation. A noncanonical Hamilton equation of motion for the macroscopically averaged vorticity has been derived for a smoothly inhomogeneous array of filaments (vortex lattice) taking into account spatial nonuniformity of the equilibrium density of the condensate, which is determined by the trap potential. The minimum of the corresponding Hamiltonian describes the static configuration of the deformed vortex lattice against the preset density background. The condition of minimum can be reduced to a nonlinear second-order partial differential vector equation for which some exact and approximate solutions are obtained. It has been shown that if the condensate density has an anisotropic Gaussian profile, the equation of motion for the averaged vorticity has solutions in the form of a vector exhibiting a nontrivial time dependence, but homogeneous in space. An integral representation has also been obtained for the matrix Green function that determines the nonlocal Hamiltonian of a system of several quantized vortices of an arbitrary shape in a Bose–Einstein condensate with the Gaussian density. In particular, if all filaments are straight and oriented along one of the principal axes of the ellipsoid, we have a finitedimensional reduction that can describe the dynamics of the system of pointlike vortices against an inhomogeneous background. A simple approximate expression is proposed for the 2D Green function with an arbitrary density profile and is compared numerically with the exact result in the Gaussian case. The corresponding approximate equations of motion, describing the long-wavelength dynamics of interacting vortex filaments in condensates with a density depending only on transverse coordinates, have been derived.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

The STAG code: A fully relativistic super transition array calculation using Green’s functions

Calculating opacities for a wide range of plasma conditions (i.e. temperature, density, element) requires detailed knowledge of the plasma configuration space and electronic structure. For plasmas composed of heavier elements, relativistic effects are important in both the electronic structure and the details of opacity spectra. We extend our previously described superconfiguration and super transition array capabilities (Gill et al., 2023) to include a fully relativistic formalism. Further, the use of hybrid bound-continuum supershells in our superconfigurations demonstrates the importance of a consistent treatment of bound and continuum electrons in dense plasma opacities, and we expand the discussion of these consequences to include issues associated with equation of state and electron correlations between bound and continuum electrons.

74 ATOMIC AND MOLECULAR PHYSICS↗

Fully-relativistic full-potential multiple scattering theory: A pathology-free scheme

The Green function plays an essential role in the Korringa–Kohn–Rostoker(KKR) multiple scattering method. In practice, it is constructed from the regular and irregular solutions of the local Kohn–Sham equation and robust methods exist for spherical potentials. However, when applied to a non-spherical potential, numerical errors from the irregular solutions give rise to pathological behaviors of the charge density at small radius. Here we present a full-potential implementation of the fully-relativistic KKR method to perform ab initio self-consistent calculation by directly solving the Dirac differential equations using the generalized variable phase (sine and cosine matrices) formalism Liu et al. (2016). The pathology around the origin is completely eliminated by carrying out the energy integration of the single-site Green function along the real axis. Here, by using an efficient pole-searching technique to identify the zeros of the well-behaved Jost matrices, we demonstrated that this scheme is numerically stable and computationally efficient, with speed comparable to the conventional contour energy integration method, while free of the pathology problem of the charge density. As an application, this method is utilized to investigate the crystal structures of polonium and their bulk properties, which is challenging for a conventional real-energy scheme. The noble metals are also calculated, both as a test of our method and to study the relativistic effects.

36 MATERIALS SCIENCE↗

Electron transport property of cobalt-centered porphyrin-armchair graphene nanoribbon (AGNR) junction

We have investigated the electron transport properties of Cobalt-centered (Co-centered) porphyrin molecule using the density functional theory and non-equilibrium greens function method. Here we have reported transmission coefficient as well as current voltage characteristics of Co-centered porphyrine molecule connected between armchair graphene nanoribbons. It has been found that at low bias region i.e., 0 V to 0.3 V it does not contribute any current. Gradual increase of bias voltage results different order of magnitude of current in different bias region.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Causal compensated perturbations in cosmology

A theoretical framework is developed to calculate linear perturbations in the gravitational and matter fields which arise causally in response to the presence of stiff matter sources in a FRW cosmology. It is shown that, in order to satisfy energy and momentum conservation, the gravitational fields of the source must be compensated by perturbations in the matter and gravitational fields, and the role of such compensation in containing the initial inhomogeneities in their subsequent evolution is discussed. A complete formal solution is derived in terms of Green functions for the perturbations produced by an arbitrary source in a flat universe containing cold dark matter. Approximate Green function solutions are derived for the late-time density perturbations and late-time gravitational waves in a universe containing a radiation fluid. A cosmological energy-momentum pseudotensor is defined to clarify the nature of energy and momentum conservation in the expanding universe.

Veeraraghavan, Shoba↗

Airframe Noise Prediction by Acoustic Analogy: Revisited

The present work follows a recent survey of airframe noise prediction methodologies. In that survey, Lighthill s acoustic analogy was identified as the most prominent analytical basis for current approaches to airframe noise research. Within this approach, a problem is typically modeled with the Ffowcs Williams and Hawkings (FW-H) equation, for which a geometry-independent solution is obtained by means of the use of the free-space Green function (FSGF). Nonetheless, the aeroacoustic literature would suggest some interest in the use of tailored or exact Green s function (EGF) for aerodynamic noise problems involving solid boundaries, in particular, for trailing edge (TE) noise. A study of possible applications of EGF for prediction of broadband noise from turbulent flow over an airfoil surface and the TE is, therefore, the primary topic of the present work. Typically, the applications of EGF in the literature have been limited to TE noise prediction at low Mach numbers assuming that the normal derivative of the pressure vanishes on the airfoil surface. To extend the application of EGF to higher Mach numbers, the uniqueness of the solution of the wave equation when either the Dirichlet or the Neumann boundary condition (BC) is specified on a deformable surface in motion. The solution of Lighthill s equation with either the Dirichlet or the Neumann BC is given for such a surface using EGFs. These solutions involve both surface and volume integrals just like the solution of FW-H equation using FSGF. Insight drawn from this analysis is evoked to discuss the potential application of EGF to broadband noise prediction. It appears that the use of a EGF offers distinct advantages for predicting TE noise of an airfoil when the normal pressure gradient vanishes on the airfoil surface. It is argued that such an approach may also apply to an airfoil in motion. However, for the prediction of broadband noise not directly associated with a trailing edge, the use of EGF does not appear to offer any advantages over the use of FSGF at the present stage of development. It is suggested here that the applications of EGF for airframe noise analysis be continued. As an example pertinent to airframe noise prediction, the Fast Scattering Code of NASA Langley is utilized to obtain the EGF numerically on the surface of a three dimensional wing with a flap and leading edge slat in uniform rectilinear motion. The interpretation and use of these numerical Green functions are then discussed.

Farassat, F.↗

Improving the Accuracy of the Boundary Integral Method Based on the Helmholtz Integral

Several recent papers in the literature have been based on various forms of the Helmholtz integral to compute the radiation fields of vibrating bodies. The surface integral form is given. The symbols of P,R micron, rho,G,R,V, and S micron are acoustic pressure, source coordinate, angular frequency, fluid density, Green function, field coordinate, surface velocity and body surface respectively. A discretized form of the surface integral is also given. Solutions to the surface integral are complicated with the singularity of the Green function at R=R micron and with the uniqueness problem at interior eigen frequencies of the enclosed space. The use of the interior integral circumvents the singularity problem since the field points are chosen in the interior space of the vibrating body where a zero pressure condition exists. The interior integral form is given. The method to improve the accuracy is detailed. Examples of the method is presented for a variety of radiators.

Koopmann, G. H.↗