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At least 253 records · Page 14

Lattice arrangement of myosin filaments correlates with fiber type in rat skeletal muscle

The thick (myosin-containing) filaments of vertebrate skeletal muscle are arranged in a hexagonal lattice, interleaved with an array of thin (actin-containing) filaments with which they interact to produce contraction. X-ray diffraction and EM have shown that there are two types of thick filament lattice. In the simple lattice, all filaments have the same orientation about their long axis, while in the superlattice, nearest neighbors have rotations differing by 0° or 60°. Tetrapods (amphibians, reptiles, birds, and mammals) typically have only a superlattice, while the simple lattice is confined to fish. We have performed x-ray diffraction and electron microscopy of the soleus (SOL) and extensor digitorum longus (EDL) muscles of the rat and found that while the EDL has a superlattice as expected, the SOL has a simple lattice. The EDL and SOL of the rat are unusual in being essentially pure fast and slow muscles, respectively. The mixed fiber content of most tetrapod muscles and/or lattice disorder may explain why the simple lattice has not been apparent in these vertebrates before. This is supported by only weak simple lattice diffraction in the x-ray pattern of mouse SOL, which has a greater mix of fiber types than rat SOL. We conclude that the simple lattice might be common in tetrapods. The correlation between fiber type and filament lattice arrangement suggests that the lattice arrangement may contribute to the functional properties of a muscle.

59 BASIC BIOLOGICAL SCIENCES↗

A new dynamical mass measurement for the Virgo cluster using the radial velocity profile of the filament galaxies

The radial velocities of the galaxies in the vicinity of a cluster show deviation from the pure Hubble flow due to their gravitational interaction with the cluster. According to a recent study by Falco et al. based on a high-resolution N-body simulation, the radial velocity profile of galaxies located at distances larger than three times the virial radius of a neighboring cluster can be well approximated by a universal formula, and could be reconstructed from direct observables provided that the galaxies are distributed along a one-dimensional filament. They suggested an algorithm designed to estimate the dynamic mass of a cluster M{sub v} by fitting the universal formula from the simulation to the reconstructed radial velocity profile of the filament galaxies around the cluster from observations. We apply the algorithm to two narrow, straight filaments (referred to as Filaments A and B) that were recently identified by Kim et al. in the vicinity of the Virgo cluster from the NASA-Sloan-Atlas catalog. The dynamical mass of the Virgo cluster is estimated to be M{sub v}=(0.84{sub −0.51}{sup +2.75})×10{sup 15} h{sup −1} M{sub ⊙} and M{sub v}=(3.24{sub −1.31}{sup +4.99})×10{sup 15} h{sup −1} M{sub ⊙} for the cases of Filaments A and B, respectively. We discuss the observational and theoretical systematics intrinsic to the method of Falco et al. as well as the physical implication of the final results.

79 ASTRONOMY AND ASTROPHYSICS↗

Relativistically transparent magnetic filaments: scaling laws, initial results and prospects for strong-field QED studies

Abstract Relativistic transparency enables volumetric laser interaction with overdense plasmas and direct laser acceleration of electrons to relativistic velocities. The dense electron current generates a magnetic filament with field strength of the order of the laser amplitude (>10 5 T). The magnetic filament traps the electrons radially, enabling efficient acceleration and conversion of laser energy into MeV photons by electron oscillations in the filament. The use of microstructured targets stabilizes the hosing instabilities associated with relativistically transparent interactions, resulting in robust and repeatable production of this phenomenon. Analytical scaling laws are derived to describe the radiated photon spectrum and energy from the magnetic filament phenomenon in terms of the laser intensity, focal radius, pulse duration, and the plasma density. These scaling laws are compared to 3D particle-in-cell (PIC) simulations, demonstrating agreement over two regimes of focal radius. Preliminary experiments to study this phenomenon at moderate intensity ( a 0 ∼ 30) were performed on the Texas Petawatt Laser. Experimental signatures of the magnetic filament phenomenon are observed in the electron and photon spectra recorded in a subset of these experiments that is consistent with the experimental design, analytical scaling and 3D PIC simulations. Implications for future experimental campaigns are discussed.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

A low-mass hub–filament with double centre revealed in NGC 2071-North

We present the first analysis in NGC 2071-North as a resolved hub–filament featuring a double centre. This ∼1.5 × 1.5 pc 2 scale filament hub contains ∼500 M ⊙ . Seen from Planck, magnetic field lines may have facilitated the gathering of material at this isolated location. The energy balance analysis, supported by infalling gas signatures, reveals that these filaments are currently forming stars. Herschel 100 $\mu$m emission concentrates in the hub, at IRAS 05451+0037 and LkHα 316, and presents diffuse lobes and loops around them. We suggest that such a double centre could be formed, because the converging locations of filament pairs are offset, by 2.3 arcmin (0.27 pc). This distance also matches the diameter of a hub ring, seen in column density and molecular tracers, such as HCO + (1–0) and HCN (1–0), that may indicate a transition and the connection between the hub and the radiating filaments. We argue that all of the three components of the emission star LkHα 316 are in physical association. We find that a ∼0.06-pc-sized gas loop, attached to IRAS 05451+0037, can be seen at wavelengths all the way from the Panoramic Survey Telescope and Rapid Response System (Pan-STARRS)-i to Herschel 100 $\mu$m. These observations suggest that both protostars at the double hub centre are interacting with the cloud material. In our 13 CO data, we do not seem to find the outflow of this region that was identified in the 1980s with much lower resolution.

79 ASTRONOMY AND ASTROPHYSICS↗

Detecting galaxy–filament alignments in the Sloan Digital Sky Survey III

Abstract Previous studies have shown the filamentary structures in the cosmic web influence the alignments of nearby galaxies. We study this effect in the LOWZ sample of the Sloan Digital Sky Survey using the ‘Cosmic Web Reconstruction' filament catalogue. We find that LOWZ galaxies exhibit a small but statistically significant alignment in the direction parallel to the orientation of nearby filaments. This effect is detectable even in the absence of nearby galaxy clusters, which suggests it is an effect from the matter distribution in the filament. A non-parametric regression model suggests that the alignment effect with filaments extends over separations of 30–40 Mpc. We find that galaxies that are bright and early-forming align more strongly with the directions of nearby filaments than those that are faint and late-forming; however, trends with stellar mass are less statistically significant, within the narrow range of stellar mass of this sample.

Chen, Yen-Chi↗

One-dimensional mapping of femtosecond laser filaments using coherent microwave scattering

Here, this paper reports on the use of coherent microwave scattering (CMS) for spatially resolved electron number density measurements of elongated plasma structures induced at mid-IR femtosecond filamentation in air. The presented studies comprise one-dimensional mapping of laser filaments induced via 3.9 µm, 127.3 fs laser pulses at output energies up to 15 mJ. The axial electron number density was measured to be invariant (about 2 × 10 15 c⁢m −3 ) along the entire filament length and for all tested laser pulse energies 5–15 mJ, and the corresponding laser intensity in the middle portion of the filament was estimated to be nearly constant for 5–15 mJ pulse energies (about 30−40 TW/c⁢m 2 ). These findings support that intensity clamping conditions were achieved in the experiments. The proposed approach enables capabilities that are currently unavailable to perform absolute and longitudinally resolved measurements of electron number density in laser filaments and to precisely characterize conditions associated with self-focusing and intensity clamping.

plasma diagnostic techniques↗

Effects of Wire Diameter and Filament Size on the Processing Window of Bi-2212 Round Wire

High engineering critical current density (J E of 1300 A/mm 2 at 4.2 K and 15 T) in Bi-2212 round wire has been achieved through a partial melt, overpressure heat treatment process. J E varies strongly with processing conditions, particularly the maximum heat treatment temperature (T max ). Increasing T max results in longer time in the melt (defined as the time between when Bi-2212 melts on heating and when Bi-2212 begins to form on cooling), more bridging between the filaments, lower J E , and higher ac losses. A wide processing window with a large range of T max that has a nearly constant J E is desired for processing large coils with large thermal mass and significant thermal time constants that may make precise control over the desired temperature – time profiles uncertain. Accordingly, we wanted to explore broadening the T max window by controlling the Bi-2212 powder melting or wire architecture design. In this work, we report on studies of the performance variation with T max for two production wires with a filling factor of about 20% and 85 × 18 filaments where filament size was varied by changing the wire diameter, a process which also shortens the distance between filaments. We found that wires with smaller filament diameter (9 to 11 μm) showed a peak J E at the low end of T max and also a J E that was more sensitive to T max . A J E – T max plot showed a plateau J E (4.2 K, 5 T) of ~1100 A/mm 2 between T max of 886 and 894 °C for 1.0 and 1.2 mm wires, where J E is less sensitive to the wire diameter and T max . This J E plateau range is a preferred processing window for achieving high J E in coils.

36 MATERIALS SCIENCE↗

De Novo Design of Self-Assembling Helical Protein Filaments

We describe a general computational approach to designing self-assembling helical filaments from monomeric proteins and use this approach to design proteins that assemble into micrometer-scale filaments with a wide range of geometries in vivo and in vitro. Cryo–electron microscopy structures of six designs are close to the computational design models. The filament building blocks are idealized repeat proteins, and thus the diameter of the filaments can be systematically tuned by varying the number of repeat units. The assembly and disassembly of the filaments can be controlled by engineered anchor and capping units built from monomers lacking one of the interaction surfaces. The ability to generate dynamic, highly ordered structures that span micrometers from protein monomers opens up possibilities for the fabrication of new multiscale metamaterials.

Shen, Hao↗

Specific Glucoside Transporters Influence Septal Structure and Function in the Filamentous, Heterocyst-Forming Cyanobacterium Anabaena sp. Strain PCC 7120

When deprived of combined nitrogen, some filamentous cyanobacteria contain two cell types: vegetative cells that fix CO 2 through oxygenic photosynthesis and heterocysts that are specialized in N 2 fixation. In the diazotrophic filament, the vegetative cells provide the heterocysts with reduced carbon (mainly in the form of sucrose) and heterocysts provide the vegetative cells with combined nitrogen. Septal junctions traverse peptidoglycan through structures known as nanopores and appear to mediate intercellular molecular transfer that can be traced with fluorescent markers, including the sucrose analog esculin (a coumarin glucoside) that is incorporated into the cells. Uptake of esculin by the model heterocyst-forming cyanobacterium Anabaena sp. strain PCC 7120 was inhibited by the α-glucosides sucrose and maltose. Analysis of Anabaena mutants identified components of three glucoside transporters that move esculin into the cells: GlsC (Alr4781) and GlsP (All0261) are an ATP-binding subunit and a permease subunit of two different ABC transporters, respectively, and HepP (All1711) is a major facilitator superfamily (MFS) protein that was shown previously to be involved in formation of the heterocyst envelope. Transfer of fluorescent markers (especially calcein) between vegetative cells of Anabaena was impaired by mutation of glucoside transporter genes. GlsP and HepP interact in bacterial two-hybrid assays with the septal junction-related protein SepJ, and GlsC was found to be necessary for the formation of a normal number of septal peptidoglycan nanopores and for normal subcellular localization of SepJ. Therefore, beyond their possible role in nutrient uptake in Anabaena , glucoside transporters influence the structure and function of septal junctions. Heterocyst-forming cyanobacteria have the ability to perform oxygenic photosynthesis and to assimilate atmospheric CO 2 and N 2 . These organisms grow as filaments that fix these gases specifically in vegetative cells and heterocysts, respectively. For the filaments to grow, these types of cells exchange nutrients, including sucrose, which serves as a source of reducing power and of carbon skeletons for the heterocysts. Movement of sucrose between cells in the filament takes place through septal junctions and has been traced with a fluorescent sucrose analog, esculin, that can be taken up by the cells. Here, we identified α-glucoside transporters of Anabaena</named-content that mediate uptake of esculin and, notably, influence septal structure and the function of septal junctions.

59 BASIC BIOLOGICAL SCIENCES↗

Dynamics of filaments during the edge-localized mode crash on NSTX

Edge localized modes (ELMs) are routinely observed in H-mode plasma regimes of the National Spherical Torus Experiment (NSTX). Due to the explosive nature of the instability, only diagnostics with high temporal and spatial resolution could provide a detailed insight into the dynamics associated with the ELMs. Gas-puff imaging (GPI) at NSTX provides 2D measurements of the magnetic field aligned fluctuations (e.g. ELM filaments) in the scrape-off layer and the at the plasma edge with 2.5 us temporal and 10 mm optical resolution.A novel analysis technique was developed to estimate the frame-by-frame velocities and the spatial parameters of the dominant structures associated with the ELMs. The analysis was applied to single ELM events to characterize the ELM crash dynamics, and then extended to a database of 169 ELM events.Statistical analysis was performed in order to find the characterizing dynamics of the ELM crash. The results show that on average an ELM crash consists of a filament with a circular cross-section which is propelled outwards with a characterizing peak radial velocity of ~3.3 km/s. The radial velocity was found to be linearly dependent on the distance of the filament from the separatrix, which has never been seen before. The ELM filament is characterized by propagation in the ion-diamagnetic direction poloidally with a peak velocity of 11.4 km/s. The ELM crash lasts for approximately 100us until the radial propulsion settles back to the pre-ELM level. The experimental findings were compared with analytical theory. Two possible mechanisms were identified for explaining the observations: the curvature interchange model and the current-filament interaction model.

correlation↗

Filament-induced breakdown spectroscopy with structured beams

Filament-induced ablation represents an attractive scheme for long-range material identification via optical spectroscopy. However, the delivery of laser energy to the target can be severely hindered by the stochastic nature of multiple-filamentation, ionization of ambient gas, and atmospheric turbulence. In order to mitigate some of these adverse effects, we examine the utility of beam shaping for femtosecond filament-induced breakdown spectroscopy with Gaussian and structured (Laguerre-Gaussian, Airy, and Bessel-Gaussian) beams in the nonlinear regime. Interaction of filaments with copper, zinc, and brass targets was studied by recording axially-resolved broadband emission from the filament-induced plasma. The laser-solid coupling efficacy was assessed by inferring thermodynamic parameters such as excitation temperature and electron density. While under our experimental conditions the ablation rate with Gaussian- and Laguerre-Gaussian beams is found to be similar, the Airy and Bessel-Gaussian beams offer the advantage of longitudinally extended working zones. These results provide insights into potential benefits of structuring ultrafast laser beams for standoff sensing applications.

47 OTHER INSTRUMENTATION↗

Filament-induced breakdown spectroscopy of solids through highly scattering media

Ultrafast laser pulse filamentation in the air can be used for remote sensing by exciting a characteristic optical emission, which is usually referred to as filamentation-induced breakdown spectroscopy. In environments that impede light propagation, such as fog, haze, or clouds, scattering makes it challenging to propagate laser beams and retrieve generated optical signatures. We demonstrate the effectiveness of laser filamentation for simultaneously clearing the path for intense femtosecond pulse propagation in a highly scattering medium, generation of luminous plasma on a solid target, and counter-propagation of a characteristic spectroscopic signal over a cleared channel along the filament path. In a dense cloud, the counter-propagating signal predominantly transits the cleared on-axis path but is highly affected by the negative thermal lensing of a Gaussian beam. Furthermore, these insights enhance our understanding of laser filamentation in atmospheric sensing and could substantially improve remote detection capabilities in poor visibility conditions.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Magnetic Separatrix as the Source Region of the Plasma Supply for an Active-region Filament

Solar filaments can be formed via chromospheric evaporation followed by condensation in the corona or by the direct injection of cool plasma from the chromosphere to the corona. We here confirm with high-resolution H α data observed by the 1.6 m New Solar Telescope of the Big Bear Solar Observatory on 2015 August 21 that an active-region filament is maintained by the continuous injection of cold chromospheric plasma. We find that the filament is rooted along a bright ridge in H α , which corresponds to the intersection of a magnetic quasi-separatrix layer with the solar surface. This bright ridge consists of many small patches whose sizes are comparable to the width of the filament threads. It is found that upflows originate from the brighter patches of the ridge, whereas the downflows move toward the weaker patches of the ridge. The whole filament is composed of two opposite-direction streams, implying that longitudinal oscillations are not the only cause of the counterstreamings, and unidirectional siphon flows with alternative directions are another possibility.

79 ASTRONOMY AND ASTROPHYSICS↗

“Dandelion” Filament Eruption and Coronal Waves Associated with a Solar Flare on 2011 February 16

Coronal disturbances associated with solar flares, such as H α Moreton waves, X-ray waves, and extreme ultraviolet (EUV) coronal waves, are discussed herein in relation to magnetohydrodynamic fast-mode waves or shocks in the corona. To understand the mechanism of coronal disturbances, full-disk solar observations with high spatial and temporal resolution over multiple wavelengths are of crucial importance. We observed a filament eruption, whose shape is like a “dandelion,” associated with the M1.6 flare that occurred on 2011 February 16 in H α images taken by the Flare Monitoring Telescope at Ica University, Peru. We derive the three-dimensional velocity field of the erupting filament. We also identify winking filaments that are located far from the flare site in the H α images, whereas no Moreton wave is observed. By comparing the temporal evolution of the winking filaments with those of the coronal wave seen in the EUV images data taken by the Atmospheric Imaging Assembly on board the Solar Dynamics Observatory and by the Extreme Ultraviolet Imager on board the Solar Terrestrial Relations Observatory-Ahead , we confirm that the winking filaments were activated by the EUV coronal wave.

79 ASTRONOMY AND ASTROPHYSICS↗

Formation and Eruption Process of a Filament in Active Region NOAA 12241

In order to better understand active-region filaments, we present an intensive study on the formation and eruption of a filament in active region NOAA 12241 during the period from 2014 December 18 to 19. Using observations from the Helioseismic and Magnetic Imager (HMI) vector magnetograms, we investigate the helicity injection rate, Lorentz force, and vertical electric current in the entire region associated with the filament. The helicity injection rate before eruption is found to be larger than that after eruption, while the vertical electric current undergoes an increase at first and then a gradual decrease, similar to what the magnetic flux undergoes. Meanwhile, we find that the right part of the filament is formed by magnetic reconnection between two bundles of magnetic field lines while the left part originated from shearing motion. The interaction of the two parts causes the eruption of this filament. The mean horizontal magnetic fields in the vicinity of the magnetic polarity inversion line (PIL) enhance rapidly during the eruption. Another striking phenomenon, where the vertical electric currents close to the magnetic PIL suddenly expand toward two sides during the eruption, is found. We propose that this fascinating feature is associated with the release of energy during the eruption.

79 ASTRONOMY AND ASTROPHYSICS↗

Structure of Geobacter OmcZ filaments suggests extracellular cytochrome polymers evolved independently multiple times

While early genetic and low-resolution structural observations suggested that extracellular conductive filaments on metal-reducing organisms such as Geobacter were composed of type IV pili, it has now been established that bacterial c -type cytochromes can polymerize to form extracellular filaments capable of long-range electron transport. Atomic structures exist for two such cytochrome filaments, formed from the hexaheme cytochrome OmcS and the tetraheme cytochrome OmcE. Due to the highly conserved heme packing within the central OmcS and OmcE cores, and shared pattern of heme coordination between subunits, it has been suggested that these polymers have a common origin. We have now used cryo-electron microscopy (cryo-EM) to determine the structure of a third extracellular filament, formed from the Geobacter sulfurreducens octaheme cytochrome, OmcZ. In contrast to the linear heme chains in OmcS and OmcE from the same organism, the packing of hemes, heme:heme angles, and between-subunit heme coordination is quite different in OmcZ. A branched heme arrangement within OmcZ leads to a highly surface exposed heme in every subunit, which may account for the formation of conductive biofilm networks, and explain the higher measured conductivity of OmcZ filaments. This new structural evidence suggests that conductive cytochrome polymers arose independently on more than one occasion from different ancestral multiheme proteins.

Cytochromes/metabolism↗

Fundamental Mechanisms of Tensile Fracture in Aluminum Sheet Unidirectionally Reinforced with Boron Filament

Results are presented from an experimental research effort to gain a more complete understanding of the physics of tensile fracture in unidirectionally reinforced B-Al composite sheet. By varying the degree of filament degradation resulting from fabrication, composite specimens were produced which failed in tension by the cumulative mode, the noncumulative mode, or by any desired combination of the two modes. Radiographic and acoustic emission techniques were combined to identify and physically describe a previously unrecognized fundamental fracture mechanism which was responsible for the noncumulative mode. The tensile strength of the composite was found to be severely limited by the noncumulative mechanism which involved the initiation and sustenance of a chain reaction of filament fractures at a relatively low stress level followed by ductile fracture of the matrix. The minimum average filament stress required for initiation of the fracture mechanism was shown to be approximately 170 ksi, and appeared to be independent of filament diameter, number of filament layers, and the identity of the matrix alloy.

Herring, H. W.↗

Comments on filament-disintegration and its relation to other aspects of solar activity.

Studies of sudden disintegrations of filaments in solar cycles 19 and 20 (to 1969) indicate that such events occur frequently. Approximately 30% of all large filaments in these cycles disintegrated in the course of their transit across the solar disk. 'Major' flares occurred with above average frequency on the last day on which 141 large disappearing filaments were observed. Relationships between a disintegrating filament on July 10-11, 1959, a prior major flare, a newly formed spot, and concomitant growth of H-alpha plage are presented. Observation of prior descending prominence material apparently directed towards the location of the flare of July 15, 1959 is reported. The development of the filament-associated flare of Feb. 13, 1967 is described.

Dodson, H. W.↗