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At least 253 records · Page 14

A computational pipeline to generate a synthetic dataset of metal ion sorption to oxides for AI/ML exploration

The charged mineral/electrolyte interfaces are ubiquitous in the surface and subsurface–including the surroundings of the geological disposal sites for radioactive waste. Therefore, understanding how ions interact with charged surfaces is critically important for predicting radionuclide mobility in the case of waste leakage. At present, the Surface Complexation Models (SCMs) are the most successful thermodynamic frameworks to describe ion retention by mineral surfaces. SCMs are interfacial speciation models that account for the effect of the electric field generated by charged surfaces on sorption equilibria. These models have been successfully used to analyze and interpret a broad range of experimental observations including potentiometric and electrokinetic titrations or spectroscopy. Unfortunately, many of the current procedures to solve and fit SCM to experimental data are not optimal, which leads to a non-transferable or non-unique description of interfacial electrostatics and consequently of the strength and extent of ion retention by mineral surfaces. Recent developments in Artificial Intelligence (AI) offer a new avenue to replace SCM solvers and fitting algorithms with trained AI surrogates. Unfortunately, there is a lack of a standardized dataset covering a wide range of SCM parameter values available for AI exploration and training–a gap filled by this study. Here, we described the computational pipeline to generate synthetic SCM data and discussed approaches to transform this dataset into AI-learnable input. First, we used this pipeline to generate a synthetic dataset of electrostatic properties for a broad range of the prototypical oxide/electrolyte interfaces. The next step is to extend this dataset to include complex radionuclide sorption and complexation, and finally, to provide trained AI architectures able to infer SCMs parameter values rapidly from experimental data. Here, we illustrated the AI-surrogate development using the ensemble learning algorithms, such as Random Forest and Gradient Boosting. These surrogate models allow a rapid prediction of the SCM model parameters, do not rely on an initial guess, and guarantee convergence in all cases.

Li, Chunhui↗

Machine learning prediction of the mechanical properties of refractory multicomponent alloys based on a dataset of phase and first principles simulation

In this work, a dataset including structural and mechanical properties of refractory multicomponent alloys was developed by fusing computations of phase diagram (CALPHAD) and density functional theory (DFT). The refractory multicomponent alloys, also named refractory complex concentrated alloys (CCAs) which contain 2–5 types of refractory elements were constructed based on Special Quasi-random Structure (SQS). The phase of alloys was predicted using CALPHAD and the mechanical property of alloys with stable and single body-centered cubic (BCC) at high temperature (over 1,500°C) was investigated using DFT-based simulation. As a result, a dataset with 393 refractory alloys and 12 features, including volume, melting temperature, density, energy, elastic constants, mechanical moduli, and hardness, were produced. To test the capability of the dataset on supporting machine learning (ML) study to investigate the property of CCAs, CALPHAD, and DFT calculations were compared with principal components analysis (PCA) technique and rule of mixture (ROM), respectively. It is demonstrated that the CALPHAD and DFT results are more in line with experimental observations for the alloy phase, structural and mechanical properties. Furthermore, the data were utilized to train a verity of ML models to predict the performance of certain CCAs with advanced mechanical properties, highlighting the usefulness of the dataset for ML technique on CCA property prediction.

36 MATERIALS SCIENCE↗

metabCombiner 2.0: Disparate Multi-Dataset Feature Alignment for LC-MS Metabolomics

Liquid chromatography–high-resolution mass spectrometry (LC-HRMS), as applied to untargeted metabolomics, enables the simultaneous detection of thousands of small molecules, generating complex datasets. Alignment is a crucial step in data processing pipelines, whereby LC-MS features derived from common ions are assembled into a unified matrix amenable to further analysis. Variability in the analytical factors that influence liquid chromatography separations complicates data alignment. This is prominent when aligning data acquired in different laboratories, generated using non-identical instruments, or between batches from large-scale studies. Previously, we developed metabCombiner for aligning disparately acquired LC-MS metabolomics datasets. Here, we report significant upgrades to metabCombiner that enable the stepwise alignment of multiple untargeted LC-MS metabolomics datasets, facilitating inter-laboratory reproducibility studies. To accomplish this, a “primary” feature list is used as a template for matching compounds in “target” feature lists. We demonstrate this workflow by aligning four lipidomics datasets from core laboratories generated using each institution’s in-house LC-MS instrumentation and methods. We also introduce batchCombine, an application of the metabCombiner framework for aligning experiments composed of multiple batches. metabCombiner is available as an R package on Github and Bioconductor, along with a new online version implemented as an R Shiny App.

97 MATHEMATICS AND COMPUTING↗

Arctic Vegetation Mapping Using Unsupervised Training Datasets and Convolutional Neural Networks

Land cover datasets are essential for modeling and analysis of Arctic ecosystem structure and function and for understanding land–atmosphere interactions at high spatial resolutions. However, most Arctic land cover products are generated at a coarse resolution, often limited due to cloud cover, polar darkness, and poor availability of high-resolution imagery. A multi-sensor remote sensing-based deep learning approach was developed for generating high-resolution (5 m) vegetation maps for the western Alaskan Arctic on the Seward Peninsula, Alaska. The fusion of hyperspectral, multispectral, and terrain datasets was performed using unsupervised and supervised classification techniques over a ~343 km 2 area, and a high-resolution (5 m) vegetation classification map was generated. An unsupervised technique was developed to classify high-dimensional remote sensing datasets into cohesive clusters. We employed a quantitative method to add supervision to the unlabeled clusters, producing a fully labeled vegetation map. We then developed convolutional neural networks (CNNs) using the multi-sensor fusion datasets to map vegetation distributions using the original classes and the classes produced by the unsupervised classification method. To validate the resulting CNN maps, vegetation observations were collected at 30 field plots during the summer of 2016, and the resulting vegetation products developed were evaluated against them for accuracy. Our analysis indicates the CNN models based on the labels produced by the unsupervised classification method provided the most accurate mapping of vegetation types, increasing the validation score (i.e., precision) from 0.53 to 0.83 when evaluated against field vegetation observations.

54 ENVIRONMENTAL SCIENCES↗

A synthesis dataset of permafrost-affected soil thermal conditions for Alaska, USA

Recent observations of near-surface soil temperatures over the circumpolar Arctic show accelerated warming of permafrost-affected soils. The availability of a comprehensive near-surface permafrost and active layer dataset is critical to better understanding climate impacts and to constraining permafrost thermal conditions and its spatial distribution in land system models. We compiled a soil temperature dataset from 72 monitoring stations in Alaska using data collected by the U.S. Geological Survey, the National Park Service, and the University of Alaska Fairbanks permafrost monitoring networks. The array of monitoring stations spans a large range of latitudes from 60.9 to 71.3°N and elevations from near sea level to ~1300 m, comprising tundra and boreal forest regions. This dataset consists of monthly ground temperatures at depths up to 1 m, volumetric soil water content, snow depth, and air temperature during 1997–2016. These data have been quality controlled in collection and processing. Meanwhile, we implemented data harmonization evaluation for the processed dataset. The final product (PF-AK, v0.1) is available at the Arctic Data Center (https://doi.org/10.18739/A2KG55).

58 GEOSCIENCES↗

SCOPE Climate: a 142-year daily high-resolution ensemble meteorological reconstruction dataset over France

SCOPE Climate (Spatially COherent Probabilistic Extended Climate dataset) is a 25-member ensemble of 142-year daily high-resolution reconstructions of precipitation, temperature, and Penman–Monteith reference evapotranspiration over France, from 1 January 1871 to 29 December 2012. SCOPE Climate provides an ensemble of 25 spatially coherent gridded multivariate time series. It is derived from the statistical downscaling of the Twentieth Century Reanalysis (20CR) by the SCOPE method, which is based on the analogue approach. SCOPE Climate performs well in comparison to both dependent and independent data for precipitation and temperature. The ensemble aspect corresponds to the uncertainty related to the SCOPE method. SCOPE Climate is the first century-long gridded high-resolution homogeneous dataset available over France and thus has paved the way for improving knowledge on specific past meteorological events or for improving knowledge on climate variability, since the end of the 19th century. This dataset has also been designed as a forcing dataset for long-term hydrological applications and studies of the hydrological consequences of climate variability over France. SCOPE Climate is freely available for any non-commercial use and can be downloaded as NetCDF files from https://doi.org/10.5281/zenodo.1299760 for precipitation, https://doi.org/10.5281/zenodo.1299712 for temperature, and https://doi.org/10.5281/zenodo.1251843 for reference evapotranspiration.

54 ENVIRONMENTAL SCIENCES↗

FLUXNET-CH 4 : a global, multi-ecosystem dataset and analysis of methane seasonality from freshwater wetlands

Methane (CH 4 ) emissions from natural landscapes constitute roughly half of global CH4 contributions to the atmosphere, yet large uncertainties remain in the absolute magnitude and the seasonality of emission quantities and drivers. Eddy covariance (EC) measurements of CH4 flux are ideal for constraining ecosystem-scale CH 4 emissions due to quasi-continuous and high-temporal-resolution CH 4 flux measurements, coincident carbon dioxide, water, and energy flux measurements, lack of ecosystem disturbance, and increased availability of datasets over the last decade. Here, we (1) describe the newly published dataset, FLUXNET-CH 4 Version 1.0, the first open-source global dataset of CH 4 EC measurements (available at https://fluxnet.org/data/fluxnet-ch4-community-product/, last access: 7 April 2021). FLUXNET-CH 4 includes half-hourly and daily gap-filled and non-gap-filled aggregated CH4 fluxes and meteorological data from 79 sites globally: 42 freshwater wetlands, 6 brackish and saline wetlands, 7 formerly drained ecosystems, 7 rice paddy sites, 2 lakes, and 15 uplands. Then, we (2) evaluate FLUXNET-CH 4 representativeness for freshwater wetland coverage globally because the majority of sites in FLUXNET-CH4 Version 1.0 are freshwater wetlands which are a substantial source of total atmospheric CH 4 emissions; and (3) we provide the first global estimates of the seasonal variability and seasonality predictors of freshwater wetland CH4 fluxes. Our representativeness analysis suggests that the freshwater wetland sites in the dataset cover global wetland bioclimatic attributes (encompassing energy, moisture, and vegetation-related parameters) in arctic, boreal, and temperate regions but only sparsely cover humid tropical regions. Seasonality metrics of wetland CH 4 emissions vary considerably across latitudinal bands. In freshwater wetlands (except those between 20°S to 20°N) the spring onset of elevated CH 4 emissions starts 3 d earlier, and the CH 4 emission season lasts 4 d longer, for each degree Celsius increase in mean annual air temperature. On average, the spring onset of increasing CH 4 emissions lags behind soil warming by 1 month, with very few sites experiencing increased CH 4 emissions prior to the onset of soil warming. In contrast, roughly half of these sites experience the spring onset of rising CH 4 emissions prior to the spring increase in gross primary productivity (GPP). The timing of peak summer CH 4 emissions does not correlate with the timing for either peak summer temperature or peak GPP. Our results provide seasonality parameters for CH 4 modeling and highlight seasonality metrics that cannot be predicted by temperature or GPP (i.e., seasonality of CH 4 peak). FLUXNET-CH 4 is a powerful new resource for diagnosing and understanding the role of terrestrial ecosystems and climate drivers in the global CH 4 cycle, and future additions of sites in tropical ecosystems and site years of data collection will provide added value to this database. All seasonality parameters are available at https://doi.org/10.5281/zenodo.4672601 (Delwiche et al., 2021). Additionally, raw FLUXNET-CH 4 data used to extract seasonality parameters can be downloaded from https://fluxnet.org/data/fluxnet-ch4-community-product/ (last access: 7 April 2021), and a complete list of the 79 individual site data DOIs is provided in Table 2 of this paper.

54 ENVIRONMENTAL SCIENCES↗

Algorithmically detected rain-on-snow flood events in different climate datasets: a case study of the Susquehanna River basin

Abstract. Rain-on-snow (RoS) events in regions of ephemeral snowpack – such as the northeastern United States – can be key drivers of cool-season flooding. We describe an automated algorithm for detecting basin-scale RoS events in gridded climate data by generating an area-averaged time series and then searching for periods of concurrent precipitation, surface runoff, and snowmelt exceeding predefined thresholds. When evaluated using historical data over the Susquehanna River basin (SRB), the technique credibly finds RoS events in published literature and flags events that are followed by anomalously high streamflow as measured by gauge data along the river. When comparing four different datasets representing the same 21-year period, we find large differences in RoS event magnitude and frequency, primarily driven by differences in estimated surface runoff and snowmelt. Using dataset-specific thresholds improves agreement between datasets but does not account for all discrepancies. We show that factors such as meteorological forcing and coupling frequency, as well as choice of land surface model, play roles in how data products capture these compound extremes and suggest care is to be taken when climate datasets are used by stakeholders for operational decision-making.

54 ENVIRONMENTAL SCIENCES↗

Farm Practice Typologies as a Strategy for Management-Relevant Land Use and Land Cover Mapping in the Great Lakes Region (Version 1) [Dataset]

Dataset overview and development This dataset provides spatially explicit agricultural land-use and land-management typologies developed for the Great Lakes Region (GLR) at the farm-parcel level. The typologies were designed to characterize not only the land-use and land-cover (LULC) associated with individual agricultural farm parcels, but also the land-management practices (LMPs), including irrigation, tile drainage, and conservation easements, occurring within those parcels and how these characteristics change through time. The dataset contains four related typology products: Annual integrated typology – describes the combined LULC and land-management characteristics for each farm parcel for individual years. LULC transition typology – describes the temporal pattern of LULC change for each farm parcel across the study period (2008-2023). LMP trend typology – describes the temporal pattern in the occurrence of LMPs for each farm parcel across the study period. Multi-year integrated typology – combines the LULC transition typology and LMP trend typology to provide an integrated characterization of long-term land-use and management patterns. Purpose of the dataset The purpose of these products is to provide a management-relevant integrated and consistent framework for evaluating the spatial and temporal organization of agricultural landscapes across the GLR. The resulting typologies can: support landscape-scale environmental and land-use analysis; provide spatial information relevant to land-management strategies, conservation planning, policy development, and program evaluation; characterize spatial patterns of agricultural land use and management; examine changes in agricultural landscapes through time; and identify persistent, transitional, and changing agricultural systems. Please refer to the README file provided in Files for more details.

Agriculture↗

Datasets for "Excessive rainfall leads to maize yield loss of a comparable magnitude to extreme drought in the United States"

Updated on 2021/07/01 Add python codes for data processing of the NASS yield data, PRISM climate data, RMA insurance data, agmip yield simulation data, and related geospatial analysis-------------------This repository is for the datasets and codes for “Excessive rainfall leads to maize yield loss of a comparable magnitude to extreme drought in the United States” (Li et al. 2019 GCB). The datasets include maize yield, climate data, maize yield loss from crop insurance data in the US, etc. The datasets can reproduce the results of the paper and they can also be reused to explore other topics. Please cite Li et al (2019) or acknowledge this dataset (DOI: 10.6084/m9.figshare.7581473) when using it.

Agricultural spatial analysis and modelling↗

LCLS RF Station Phase Anomaly Candidate Dataset

A public anomaly detection dataset constructed from RF station faults for phase at SLAC's LCLS (Linac Coherent Light Source). We have compiled a dataset of the RF station diagnostic phase data and the beam-position monitor (BPM) signals, alongside the hand labels, for a labeled study period. The dataset consists of two HDF5 files (one for train and one for test) containing the raw data, two CSV files containing information about the candidates. The CSV file for the test dataset also contains the label.

Liang, Jia [Stanford Univ., CA (United States). In↗

Legacy Survey of Space and Time Data Preview 1: raw dataset type

The Legacy Survey of Space and Time Data Preview 1 (DP1) is the first release of data from the NSF-DOE Vera C. Rubin Observatory. It consists of raw and calibrated single-epoch images, co-adds, difference images, detection catalogs, and other derived data products. DP1 is based on 1792 science-grade optical/near-infrared exposures acquired over 48 distinct nights by the Rubin Commissioning Camera, LSSTComCam, on the Simonyi Survey Telescope at the Summit Facility on Cerro Pachón, Chile during the first on-sky commissioning campaign in late 2024. DP1 covers a total of approximately 15 sq. deg. over seven roughly equally-sized non-contiguous fields, each independently observed in six broad photometric bands, ugrizy, spanning a range of stellar densities and latitudes and overlapping with external reference datasets. This dataset is a subset of the full data release consisting of the raw dataset type. These are unprocessed images from the LSST Commissioning Camera. This release contains 16,125 datasets of this type.

79 ASTRONOMY AND ASTROPHYSICS↗

Legacy Survey of Space and Time Data Preview 1: visit_image dataset type

The Legacy Survey of Space and Time Data Preview 1 (DP1) is the first release of data from the NSF-DOE Vera C. Rubin Observatory. It consists of raw and calibrated single-epoch images, co-adds, difference images, detection catalogs, and other derived data products. DP1 is based on 1792 science-grade optical/near-infrared exposures acquired over 48 distinct nights by the Rubin Commissioning Camera, LSSTComCam, on the Simonyi Survey Telescope at the Summit Facility on Cerro Pachón, Chile during the first on-sky commissioning campaign in late 2024. DP1 covers a total of approximately 15 sq. deg. over seven roughly equally-sized non-contiguous fields, each independently observed in six broad photometric bands, ugrizy, spanning a range of stellar densities and latitudes and overlapping with external reference datasets. This dataset is a subset of the full data release consisting of the visit_image dataset type. These are individual processed and calibrated sky images obtained from a single observation with a single filter. This release contains 15,972 datasets of this type.

79 ASTRONOMY AND ASTROPHYSICS↗

Legacy Survey of Space and Time Data Preview 1: difference_image dataset type

The Legacy Survey of Space and Time Data Preview 1 (DP1) is the first release of data from the NSF-DOE Vera C. Rubin Observatory. It consists of raw and calibrated single-epoch images, co-adds, difference images, detection catalogs, and other derived data products. DP1 is based on 1792 science-grade optical/near-infrared exposures acquired over 48 distinct nights by the Rubin Commissioning Camera, LSSTComCam, on the Simonyi Survey Telescope at the Summit Facility on Cerro Pachón, Chile during the first on-sky commissioning campaign in late 2024. DP1 covers a total of approximately 15 sq. deg. over seven roughly equally-sized non-contiguous fields, each independently observed in six broad photometric bands, ugrizy, spanning a range of stellar densities and latitudes and overlapping with external reference datasets. This dataset is a subset of the full data release consisting of the difference_image dataset type. These are images created by subtracting a template image from a visit image. This release contains 15,972 datasets of this type.

79 ASTRONOMY AND ASTROPHYSICS↗

Legacy Survey of Space and Time Data Preview 1: deep_coadd dataset type

The Legacy Survey of Space and Time Data Preview 1 (DP1) is the first release of data from the NSF-DOE Vera C. Rubin Observatory. It consists of raw and calibrated single-epoch images, co-adds, difference images, detection catalogs, and other derived data products. DP1 is based on 1792 science-grade optical/near-infrared exposures acquired over 48 distinct nights by the Rubin Commissioning Camera, LSSTComCam, on the Simonyi Survey Telescope at the Summit Facility on Cerro Pachón, Chile during the first on-sky commissioning campaign in late 2024. DP1 covers a total of approximately 15 sq. deg. over seven roughly equally-sized non-contiguous fields, each independently observed in six broad photometric bands, ugrizy, spanning a range of stellar densities and latitudes and overlapping with external reference datasets. This dataset is a subset of the full data release consisting of the deep_coadd dataset type. These are the combination of multiple processed, calibrated, and background- subtracted images, for a patch of sky, for each of the six filters. This release contains 2,644 datasets of this type.

79 ASTRONOMY AND ASTROPHYSICS↗

Legacy Survey of Space and Time Data Preview 1: template_coadd dataset type

The Legacy Survey of Space and Time Data Preview 1 (DP1) is the first release of data from the NSF-DOE Vera C. Rubin Observatory. It consists of raw and calibrated single-epoch images, co-adds, difference images, detection catalogs, and other derived data products. DP1 is based on 1792 science-grade optical/near-infrared exposures acquired over 48 distinct nights by the Rubin Commissioning Camera, LSSTComCam, on the Simonyi Survey Telescope at the Summit Facility on Cerro Pachón, Chile during the first on-sky commissioning campaign in late 2024. DP1 covers a total of approximately 15 sq. deg. over seven roughly equally-sized non-contiguous fields, each independently observed in six broad photometric bands, ugrizy, spanning a range of stellar densities and latitudes and overlapping with external reference datasets. This dataset is a subset of the full data release consisting of the template_coadd dataset type. These are the combination of processed images with the best seeing, for a patch of sky and for each of the six LSST filters. Used to create difference images. This release contains 2,730 datasets of this type.

79 ASTRONOMY AND ASTROPHYSICS↗

Legacy Survey of Space and Time Data Preview 1: survey property dataset type

The Legacy Survey of Space and Time Data Preview 1 (DP1) is the first release of data from the NSF-DOE Vera C. Rubin Observatory. It consists of raw and calibrated single-epoch images, co-adds, difference images, detection catalogs, and other derived data products. DP1 is based on 1792 science-grade optical/near-infrared exposures acquired over 48 distinct nights by the Rubin Commissioning Camera, LSSTComCam, on the Simonyi Survey Telescope at the Summit Facility on Cerro Pachón, Chile during the first on-sky commissioning campaign in late 2024. DP1 covers a total of approximately 15 sq. deg. over seven roughly equally-sized non-contiguous fields, each independently observed in six broad photometric bands, ugrizy, spanning a range of stellar densities and latitudes and overlapping with external reference datasets. This dataset is a subset of the full data release consisting of the survey property dataset type. These are healSparse property maps for the survey. This release contains 84 datasets of this type.

79 ASTRONOMY AND ASTROPHYSICS↗

Legacy Survey of Space and Time Data Preview 1: dia_source dataset type

The Legacy Survey of Space and Time Data Preview 1 (DP1) is the first release of data from the NSF-DOE Vera C. Rubin Observatory. It consists of raw and calibrated single-epoch images, co-adds, difference images, detection catalogs, and other derived data products. DP1 is based on 1792 science-grade optical/near-infrared exposures acquired over 48 distinct nights by the Rubin Commissioning Camera, LSSTComCam, on the Simonyi Survey Telescope at the Summit Facility on Cerro Pachón, Chile during the first on-sky commissioning campaign in late 2024. DP1 covers a total of approximately 15 sq. deg. over seven roughly equally-sized non-contiguous fields, each independently observed in six broad photometric bands, ugrizy, spanning a range of stellar densities and latitudes and overlapping with external reference datasets. This dataset is a subset of the full data release consisting of the dia_source dataset type. These are measurements for detected sources in difference images. This release contains 25 datasets of this type.

79 ASTRONOMY AND ASTROPHYSICS↗