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At least 235 records · Page 13
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

Laboratory colonization by Dirofilaria immitis alters the microbiome of female Aedes aegypti mosquitoes

Background: The ability of blood-feeding arthropods to successfully acquire and transmit pathogens of medical and veterinary importance has been shown to be interfered with, or enhanced by, the arthropod’s native microbiome. Mosquitoes transmit viruses, protozoan and filarial nematodes, the majority of which contribute to the 17% of infectious disease cases worldwide. Diroflaria immitis, a mosquito-transmitted filarial nematodes of dogs and cats, is vectored by several mosquito species including Aedes aegypti. Methods: In this study, we investigated the impact of D. immitis colonization on the microbiome of laboratory reared female Ae. aegypti. Metagenomic analysis of the V3–V4 variable region of the microbial 16S RNA gene was used for identification of the microbial differences down to species level. Results: We generated a total of 1068 OTUs representing 16 phyla, 181 genera and 271 bacterial species. Overall, in order of abundance, Proteobacteria, Bacteroidetes, Actinobacteria and Firmicutes were the most represented phylum with D. immitis-infected mosquitoes having more of Proteobacteria (71%) than uninfected mosquitoes (56.9%). An interesting finding in this study is the detection of Klebsiella oxytoca in relatively similar abundance in infected and uninfected mosquitoes, suggesting a possible endosymbiotic relationship, and has been previously shown to indirectly compete for nutrients with fungi on domestic housefly eggs and larvae. While D. immitis colonization has no effect on the overall species richness, we identified significant differences in the composition of selected bacterial genera and phyla between the two groups. We also reported distinct compositional and phylogenetic differences in the individual bacterial species when commonly identified bacteria were compared. Conclusions: To the best of our knowledge, this is the first study to understand the impact of a filarial infection on the microbiome of its mosquito vector. Further studies are required to identify bacteria species that could play an important role in the mosquito biology. While the microbiome composition of Ae. aegypti mosquito have been previously reported, our study shows that in an effort to establish itself, a filarial nematode modifies and alters the overall microbial diversity within its mosquito host.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

A meta-evaluation of the quality of reporting and execution in ecological meta-analyses

Quantitatively summarizing results from a collection of primary studies with meta-analysis can help answer ecological questions and identify knowledge gaps. The accuracy of the answers depends on the quality of the meta-analysis. We reviewed the literature assessing the quality of ecological meta-analyses to evaluate current practices and highlight areas that need improvement. From each of the 18 review papers that evaluated the quality of meta-analyses, we calculated the percentage of meta-analyses that met criteria related to specific steps taken in the meta-analysis process (i.e., execution) and the clarity with which those steps were articulated (i.e., reporting). We also re-evaluated all the meta-analyses available from Pappalardo et al. to extract new information on ten additional criteria and to assess how the meta-analyses recognized and addressed non-independence. In general, we observed better performance for criteria related to reporting than for criteria related to execution; however, there was a wide variation among criteria and meta-analyses. Meta-analyses had low compliance with regard to correcting for phylogenetic non-independence, exploring temporal trends in effect sizes, and conducting a multifactorial analysis of moderators (i.e., explanatory variables). In addition, although most meta-analyses included multiple effect sizes per study, only 66% acknowledged some type of non-independence. The types of non-independence reported were most often related to the design of the original experiment (e.g., the use of a shared control) than to other sources (e.g., phylogeny). We suggest that providing specific training and encouraging authors to follow the PRISMA EcoEvo checklist recently developed by O’Dea et al. can improve the quality of ecological meta-analyses.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

A Nonergodic Ground-Motion Model for the San Francisco Bay Area for Small-Magnitude Earthquakes

ABSTRACT Recently, generative models have become a computationally efficient alternative to physics-based numerical simulations of ground motions. Neural networks can learn from existing ground-motion data to generate unobserved ground-motion data at new source and site locations. A key challenge with generative models is ensuring that predicted ground motions remain within a physically realistic range. For this purpose, we developed an empirical, nonergodic ground-motion model (GMM) for small-magnitude earthquakes in the San Francisco Bay area based on about 5000 recordings per component for Mw ≤ 4 earthquakes. The nonergodic GMM predicts spatially varying median source, site, and path effects for both the Fourier amplitude spectrum (FAS) and the Fourier phase derivative (a proxy for duration), as well as the corresponding epistemic uncertainty for each term. For FAS, our model shows above-average source and site effects in the western part of the region and below-average effects in the eastern part, with regional effects exhibiting larger spatial correlation lengths with increasing frequency. For duration, the source term is negligible for small-magnitude earthquakes, and the site term leads to site-specific variations up to 5 s. Path effects for FAS and duration depend on the source–site pair and are extrapolated spatially using recent methods for path-effect modeling. The aleatory variability of the within-site within-path residuals is similar to the variability found in previous studies for other regions. The nonergodic model provides two key contributions: first, median adjustment terms that are transferable to larger magnitude earthquakes, further reducing aleatory variability in probabilistic seismic hazard analysis; second, region-specific criteria for validating machine learning-based ground-motion generators to evaluate whether synthetic ground motions exhibit physically realistic source, site, and path effects.

Lacour, Maxime↗
DOE OSTI2021

Semi-supervised Bayesian Low-shot Learning

Deep neural networks (NNs) typically outperform traditional machine learning (ML) approaches for complicated, non-linear tasks. It is expected that deep learning (DL) should offer superior performance for the important non-proliferation task of predicting explosive device configuration based upon observed optical signature, a task which human experts struggle with. However, supervised machine learning is difficult to apply in this mission space because most recorded signatures are not associated with the corresponding device description, or “truth labels.” This is challenging for NNs, which traditionally require many samples for strong performance. Semi-supervised learning (SSL), low-shot learning (LSL), and uncertainty quantification (UQ) for NNs are emerging approaches that could bridge the mission gaps of few labels and rare samples of importance. NN explainability techniques are important in gaining insight into the inferential feature importance of such a complex model. In this work, SSL, LSL, and UQ are merged into a single framework, a significant technical hurdle not previously demonstrated. Exponential Average Adversarial Training (EAAT) and Pairwise Neural Networks (PNNs) are chosen as the SSL and LSL methods of choice. Permutation feature importance (PFI) for functional data is used to provide explainability via the Variable importance Explainable Elastic Shape Analysis (VEESA) pipeline. A variety of uncertainty quantification approaches are explored: Bayesian Neural Networks (BNNs), ensemble methods, concrete dropout, and evidential deep learning. Two final approaches, one utilizing ensemble methods and one utilizing evidential learning, are constructed and compared using a well-quantified synthetic 2D dataset along with the DIRSIG Megascene.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2025

Hyperspectral segmentation of plants in fabricated ecosystems

Hyperspectral imaging provides a powerful tool for analyzing above-ground plant characteristics in fabricated ecosystems, offering rich spectral information across diverse wavelengths. This study presents an efficient workflow for hyperspectral data segmentation and subsequent data analytics, minimizing the need for user annotation through the use of ensembles of sparse mixed scale convolution neural networks. The segmentation process leverages the diversity of ensembles to achieve high accuracy with minimal labeled data, reducing labor-intensive annotation efforts. To further enhance robustness, we incorporate image alignment techniques to address spatial variability in the dataset. Downstream analysis focuses on using the segmented data for processing spectral data, enabling monitoring of plant health. This approach provides a scalable solution for spectral segmentation, and facilitates actionable insights into plant conditions in complex, controlled environments. Our results demonstrate the utility of combining advanced machine learning techniques with hyperspectral analytics for high-throughput plant monitoring.

Zwart, Petrus H.↗
DOE OSTI2022

Increasing evapotranspiration decouples the positive correlation between vegetation cover and warming in the Tibetan plateau

Plant growth generally responds positively to an increase in ambient temperature. Hence, most Earth system models project a continuous increase in vegetation cover in the future due to elevated temperatures. Over the last 40 years, a considerable warming trend has affected the alpine ecosystem across the Tibetan Plateau. However, we found vegetation growth in the moderately vegetated areas of the plateau were negatively related to the warming temperatures, thus resulting in a significant degradation of the vegetative cover (LAI: slope = -0.0026 per year, p < 0.05). The underlying mechanisms that caused the decoupling of the relationship between vegetation growth and warming in the region were elaborated with the analysis of water and energy variables in the ecosystem. Results indicate that high temperatures stimulated evapotranspiration and increased the water consumption of the ecosystem (with an influence coefficient of 0.34) in these degrading areas, significantly reducing water availability (with an influence coefficient of -0.68) and limiting vegetation growth. Moreover, the negative warming effect on vegetation was only observed in the moderately vegetated areas, as evapotranspiration there predominantly occupied a larger proportion of available water (compared to the wet and highly vegetated areas) and resulted in a greater increase in total water consumption in a warmer condition (compared to dry areas with lower levels of vegetation cover). These findings highlight the risk of vegetation degradation in semi-arid areas, with the degree of vulnerability depending on the level of vegetation cover. Furthermore, results demonstrate the central role of evapotranspiration in regulating water stress intensity on vegetation under elevated temperatures.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Model and remote-sensing-guided experimental design and hypothesis generation for monitoring snow-soil–plant interactions

In this study, we develop a machine-learning (ML)-enabled strategy for selecting hillslope-scale ecohydrological monitoring sites within snow-dominated mountainous watersheds, with a particular focus on snow-soil–plant interactions. Data layers rely on spatial data layers from both remote sensing and hydrological model simulations. Specifically, a Landsat-based foresummer drought sensitivity index is used to define the dependency of the annual peak plant productivity on the Palmer drought severity index in the early growing season. Hydrological simulations provide the spatiotemporal dynamics of near-surface soil moisture and snow depth. In this framework, a regression analysis identifies the key hydrological variables relevant to the spatial heterogeneity of drought sensitivity. We then apply unsupervised clustering to these key variables, using the Gaussian mixture model, to group hillslopes into several zones that have divergent relationships regarding soil moisture, snow dynamics, and drought sensitivity. Using the datasets collected in the East River Watershed (Crested Butte, Colorado, United States), results show that drought sensitivity is significantly correlated with model-derived soil moisture and snow-free timing over space and time. The relationship is, however, non-linear, such that the correlation decreases above a threshold elevation and in a heavy snow year due to large snowpacks, lateral flow, and soil storage limitations. Clustering is then able to define the zones that have high or low sensitivity to drought, as well as the mid-elevation regions where sensitivity is associated with the topographic aspect and net potential radiation. In addition, the algorithm identifies the most representative hillslopes with road/trail access within each zone for installing monitoring sites. Our method also aims to significantly increase the use of ML and model-simulation results to guide critical zone and watershed monitoring activities.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Influence of Process Parameter and Build Rate Variations on Defect Formation in Laser Powder Bed Fusion SS316L

Laser powder bed fusion (LPBF) is an additive manufacturing process that has gained interest for its material fabrication due to multiple advantages, such as the ability to print parts with small feature sizes, good mechanical properties, reduced material waste, etc. However, variations in the key process parameters in LPBF may result in the instantiation of porosity defects and variation in build rate. Particularly, volumetric energy density (VED) is a variable that encapsulates a number of those parameters and represents the amount of energy input from the laser source to the feedstock. VED has been traditionally used to inform the quality of the printed part but different values of VED are presented as optimal values for certain material systems. An optimal VED value can be maintained by changing the key process parameters so that various combinations yield a constant value. In this study, an optimal constant VED value is maintained while printing SS316L with variable key processing parameters. Porosity analysis is performed using optical microscopy, as well as X-ray computed tomography, to reveal the volume density and distribution of those pores. Two primary defect categories are identified, namely lack of fusion and porosity induced by balling defects. The findings indicate that, even at optimal VED, variations in process parameters can significantly influence defect type, underscoring the sensitivity of defect formation to the variation of these parameters. Furthermore, a minor change in the build rate, driven by adjustments in process parameters, was found to influence defect categories. These findings emphasize that fine tuning the process parameters and build rate is essential to minimize defects. Finally, fiducial marks have been identified as a source of unintentional porosity defects. These results enable the refinement of process parameters, ultimately optimizing LPBF to achieve enhanced material density and expedite the printing.

36 MATERIALS SCIENCE↗
DOE OSTI2026

Dust semi-direct effects: low-level cloud response to free-tropospheric dust-induced longwave radiation over the North Atlantic Ocean

Aerosol semi-direct effect is the adjustment of the radiative budget due to the cloud response to radiation absorption. Although dust accounts for about a third of aerosols' shortwave absorption, our understanding of its semi-direct effect often relies on traditional shortwave-focused mechanisms previously established for biomass-burning aerosols, and implications of dust longwave absorption on clouds have yet to be explored. Here, we assess the low-level cloud cover (LLCC) response to changes in properties and characteristics of the free-tropospheric dust layer over the North Atlantic Ocean (May–August, 2007–2017). We find that, consistent with previous studies, LLCC typically responds positively (increases in clouds) to an overlying dust layer. However, this response weakens with increasing dust optical depth (DOD), dust geometric thickness (DGT), and dust-layer base height (DBH). Specifically, we find that the LLCC response weakens by 4.3 ± 1.04 % and 1.6 ± 0.65 %, respectively, for a one-standard-deviation increase in DOD and DGT, and a smaller response to DBH (0.19 ± 0.45 %). We also find that the weakened LLCC response is primarily due to enhanced dust-induced longwave-dominated cloud-top warming, which counteracts the mean cloud-top cooling by as much as 19 % (mean of 9 %). Sensitivity analysis further indicates that the variability in dust properties, influenced by dust size distribution and refractive index, dominates the changes in dust-induced cloud-top warming, rather than variabilities in cloud properties or thermodynamic profiles. Our result adds to the traditional understanding of LLCC enhancement through shortwave-driven atmospheric stability, often associated with aerosol semi-direct effects, and highlights the role of dust-induced cloud-top longwave warming in dust semi-direct effects.

Pandey, Satyendra K. [Univ. of California, Merced,↗
DOE OSTI2020

Transverse energy–energy correlations of jets in the electron–proton deep inelastic scattering at HERA

We study the event shape variables, transverse energy–energy correlation TEEC (cosφ) and its asymmetry ATEEC (cosφ) in deep inelastic scattering (DIS) at the electron–proton collider HERA, where φ is the angle between two jets defined using a transverse-momentum (k T ) jet algorithm. At HERA, jets are defined in the Breit frame, and the leading nontrivial transverse energy–energy correlations arise from the 3-jet configurations. With the help of the NLOJET++, these functions are calculated in the leading order (LO) and the next-to-leading order (NLO) approximations in QCD at the electron–proton center-of-mass energy $\sqrt{s}$ = 314 GeV. We restrict the angular region to -0.8 ≤ cosφ ≤ 0.8, as the forward- and backward-angular regions require resummed logarithmic corrections, which we have neglected in this work. Following experimental jet-analysis at HERA, we restrict the DIS-variables x, y = Q 2 /(xs), where Q 2 = -q 2 is the negative of the momentum transfer squared q 2 , to 0 ≤ x ≤ 1, 0.2 ≤ y ≤ 0.6, and the pseudo-rapidity variable in the laboratory frame (η lab ) to the range -1 ≤ η lab ≤ 2.5. The TEEC and ATEEC functions are worked out for two ranges in Q 2 , defined by 5.5GeV 2 ≤ Q 2 ≤ 80GeV 2 , called the low-Q 2 -range, and 150GeV 2 ≤ Q 2 ≤ 1000GeV 2 , called the high-Q 2 -range. We show the sensitivity of these functions on the parton distribution functions (PDFs), the factorization (μ F ) and renormalization (μ R ) scales, and on α s (M$^2_Z$). Of these the correlations are stable against varying the scale μ F and the PDFs, but they do depend on μ R . For the choice of the scale μ R =$\sqrt{\langle ET \rangle^2+Q^2}$, advocated in earlier jet analysis at HERA, the shape variables TEEC and ATEEC are found perturbatively robust. These studies are useful in the analysis of the HERA data, including the determination of α s (M$^2_Z$) from the shape variables.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2022

Benchmarking Simulated Precipitation Variability Amplitude across Time Scales

Here, objective performance metrics that measure precipitation variability across time scales from subdaily to interannual are presented and applied to Historical simulations of Coupled Model Intercomparison Project phase 5 and 6 (CMIP5 and CMIP6) models. Three satellite-based precipitation estimates (IMERG, TRMM, and CMORPH) are used as reference data. We apply two independent methods to estimate temporal variability of precipitation and compare the consistency in their results. The first method is derived from power spectra analysis of 3-hourly precipitation, measuring forced variability by solar insolation (diurnal and annual cycles) and internal variability at different time scales (subdaily, synoptic, subseasonal, seasonal, and interannual). The second method is based on time averaging and facilitates estimating the seasonality of subdaily variability. Supporting the robustness of our metric, we find a near equivalence between the results obtained from the two methods when examining simulated-to-observed ratios over large domains (global, tropics, extratropics, land, or ocean). Additionally, we demonstrate that our model evaluation is not very sensitive to the discrepancies between observations. Our results reveal that CMIP5 and CMIP6 models in general overestimate the forced variability while they underestimate the internal variability, especially in the tropical ocean and higher-frequency variability. The underestimation of subdaily variability is consistent across different seasons. The internal variability is overall improved in CMIP6, but remains underestimated, and there is little evidence of improvement in forced variability. Increased horizontal resolution results in some improvement of internal variability at subdaily and synoptic time scales, but not at longer time scales.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Unveiling Feedstock Variability: Insights into Corn Stover Conversion - Part I: Physicochemical Properties and Self-Degradation

Transforming agricultural waste into biofuels and bioproducts is crucial to advancing a low-carbon bioeconomy. However, the inherent variability in the composition and quality introduces uncertainties in the conversion efficiency and poses challenges in process development. Through integrating a high-throughput conversion system, material characterization techniques, and advanced data analysis tools, this study investigates the variability of corn stover and its subsequent impacts on carbohydrate conversion. The findings reveal that indoor storage substantially reduces the moisture and ash content and soil contamination, while other properties remain largely unchanged. Self-degradation due to microbial activity during storage decreases the carbohydrate content of corn stover but enhances glucose and xylose yields. A negative correlation is observed between sugar yields and lignin content across samples with varying ash and moisture content. The inhibitory effect of lignin diminishes in self-degraded samples likely due to the disrupted cell wall structure. Although self-degradation slightly increases cellulose crystallinity, no strong correlation was observed between the crystallinity and sugar yield. Hot water pretreatment under mild conditions effectively mitigates inherent variability, consistently improving the sugar yield from corn stover by up to 50%. By elucidating the feedstock variability and its impact on convertibility, these findings offer valuable insights into appropriate feedstock handling and management, highlighting potential strategies to address variability challenges.

09 BIOMASS FUELS↗
DOE OSTI2020

Molecular simulation data for 'Data-guided Multi-Map variables for ensemble refinement of molecular movies'

These trajectories, scripts, and analysis performed on Summit underly the work published as 'Data-guided Multi-Map variables for ensemble refinement of molecular movies'. The trajectories include equilibrium and non-equilibrium sampling of ADK, CODH, and FLPP3, the scripts used to build the systems, and the scripts used to analyze the output. The directory structure is explained further in an internal README file.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Optimal Complementarity Analysis of Potential Floating Solar Co-Located With Existing Hydropower Assets Across the Contiguous United States

The U.S. is expected to double its rate of renewable capacity from 2024 to 2030. However, the stochastic nature of renewable energy poses challenges to the operation and reliability of our power grid. The combined generation from renewable energy sources, with dispatchable sources (such as hydropower) operating as a hybrid energy plant, could mitigate this variability. In this paper, the complementarity analysis of selected U.S. reservoirs with existing hydropower assets (EHAs) and potential floating photovoltaics (FPVs) is conducted for the continuous U.S. (CONUS). The optimal FPV capacity for each site is determined by minimizing the variability of the combined output, while adhering to the FPV potential. Our results indicate that over 50% of the analyzed reservoirs achieve a stability coefficient exceeding 0.5, leading to a less-variable output after optimization. Finally, we analyze the complementary hydro-FPV hybrid reservoirs by considering both the Pearson correlation coefficient and the stability coefficient on daily, monthly, and yearly scales. Summaries are included of locations of theoretical FPVs co-located with hydropower plants that exhibit high complementarity based on the selected metrics.

13 - HYDRO ENERGY↗
DOE OSTI2023

Regional variability in the environmental controls of precipitation regimes in the tropics

The environmental factors that control precipitation regimes in Boreal winter rainfall in the tropics and their regional variabilities are examined using a simple statistical analysis and a machine learning model. Radar-derived precipitation from field campaigns at Darwin Australia, Manaus Brazil, and the Equatorial Indian Ocean, along with the corresponding large-scale environmental variables from ERA5 reanalysis, are used. The dependence of marginal distributions of frequencies of these regimes on five environmental variables are calculated. The variables are hourly column integrated precipitable water (PW), convective available potential energy (CAPE), convective inhibition (CIN), and lower and upper tropospheric wind shear. The simple machine learning model that predicts the probability of transition from suppressed to an active regime as a function of the environmental variables is designed and optimized for a potential application as a trigger function for convection parameterizations. To the first order the analysis shows an abrupt increase in the probability of an active regime near PW > 60 mm and CIN of <100 J kg -1 . The key differences in the frequencies of active regimes among the regions are found to be related to the fact that over Darwin there is strong variability in PW while CIN is generally low. Over Amazon, on the other hand, both PW and CIN are quite variable. Over the DYNAMO domain the comparatively frequent low PW is compensated for by consistently low CIN resulting in a moderate frequency of an active regime.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Probing the Role of Multi-scale Heterogeneity in Graphite Electrodes for Extreme Fast Charging

Electrode-scale heterogeneity can combine with complex electrochemical interactions to impede lithium-ion battery performance, particularly during fast charging. This research investigates the influence of electrode heterogeneity at different scales on the lithium-ion battery electrochemical performance under operational extremes. We employ image-based mesoscale simulation in conjunction with a three-dimensional electrochemical model to predict performance variability in 14 graphite electrode X-ray computed tomography data sets. Our analysis reveals that the tortuous anisotropy stemming from the variable particle morphology has a dominating influence on the overall cell performance. Cells with platelet morphology achieve lower capacity, higher heat generation rates, and severe plating under extreme fast charge conditions. On the contrary, the heterogeneity due to the active material clustering alone has minimal impact. Our work suggests that manufacturing electrodes with more homogeneous and isotropic particle morphology will improve electrochemical performance and improve safety, enabling electromobility.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2021

Techno-economic analysis of long-duration energy storage and flexible power generation technologies to support high-variable renewable energy grids

As variable renewable energy penetration increases beyond 80%, clean power systems will require long-duration energy storage or flexible, low-carbon generation. Here, we provide a detailed techno-economic evaluation and uncertainty analysis of applicable technologies and identify challenges and opportunities to support electric grid planning. We show that for a 120-h storage duration rating, hydrogen systems with geologic storage and natural gas with carbon capture are the least-cost low-carbon technologies for both current and future capital costs. These results are robust to uncertainty for the future capital cost scenario, but adiabatic compressed air and pumped thermal storage could be the least-cost technologies in the current capital cost scenario under uncertainty. Finally, we present a new storage system using heavy-duty vehicle fuel cells that could reduce the levelized cost of energy by 13%–20% compared with the best previously considered storage technology and, thus, could help enable very high (>80%) renewable energy grids.

25 ENERGY STORAGE↗