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DOE OSTI2020

COVID-19 Data Curation Effort: An Initial Analysis of the Data

During the COVID-19 pandemic of 2020, major case reporting outlets quickly coalesced around two or three primary vendors. Johns Hopkins University and The New York Times were among the more prominent, and all were of great value to the nation, particularly during the uncertain early stages of the pandemic. They primarily focused on three major attributes: number of new cases, deaths, and recovery. Recognizing that many states were reporting very detailed data sets (e.g., hospital beds) at a county level or finer, the ORNL Pandemic Modeling team embarked on a major data curation effort from March to June 2020 for the purpose of capturing this wealth of detailed data. The challenge of curating this data was daunting. The number of attributes reported by the states grew on almost on a weekly basis. States were routinely shifting their web tool strategies away from easily parsable HTML-based formatting to new Tableau and ArcGIS content. This growth in the sheer number of attributes, combined with the unpredictable shifts in data format, meant an aggressive and agile combination of automated scripting and manual scraping was required to capture new daily streams. Further, the team had to scale up staff and widen its approach for capture and storage. As a result, the team collected more than 11 million data points. Following the close of this data collection effort on June 30 th , 2020, the team embarked on a major effort to appraise what had been collected, including an inventory list, spatial completeness, temporal completeness, scale and geographic characteristics, and a determination. A report on this matter was submitted on September 15 th , 2020, titled “DOE COVID-19 Data Curation Effort: Overview of Data Collection Coverage”. Over 2000 unique attributes had been netted over a wide range of spatial scales, including state, county, zip codes, health regions, and census blocks. Over 11 million individual data points were collected across these attributes, and spatial coverage (in total) included all 50 states and multiple territories. What became apparent in the process is that in the absence of any data standards, many states reported a wide variety of unique attributes that were not always compatible with attributes reported in other states. As time continued, states began adding new attributes and offering finer grain detail in some older attributes. This meant that not all data streams existed for the entire time period; in fact, the number tended to increase dramatically towards the end. Often, states would begin an attribute series and then stop altogether. These highly variable and uncertain conditions illuminated the need for harmonization approaches that would reconcile and conflate changing attribute names and detail over time. For example, grouping racial data reported as either Black or African American, depending on the state, into a single harmonized attribute. These choices would make a within-state analysis possible during the time period and lead to potential between-state analytics later on. This was almost entirely a manual decision process, requiring some subjective decision-making at times, to prevent a fragmented, short-lived collection of time series fragments that would offer few insights into trends, patterns, and correlates. This report imports harmonized data for state and county into the World Spatio-Temporal Analytics and Mapping Project (WSTAMP). WSTAMP is a major space-time analysis and visualization tool developed at ORNL for the National Geospatial-Intelligence Agency specifically for this kind of exploratory analysis. WSTAMP offers a rich analytical and graphical environment consisting of a wide range of analytics. These include time series plots, statistical summaries, data mining techniques, trend and pattern detection, and hypothesis generation.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2022

FAIRification, Quality Assessment, and Missingness Pattern Discovery for Spatiotemporal Photovoltaic Data

The ongoing growth of the photovoltaic market has pushed the demand for power forecasting and performance evaluation for a huge population of PV power plants. Through access to a large number of time series data sets from different power plants, we have found common issues that impede the modeling process. Namely, the time series data are hard to transfer between groups due to differences in variable nomenclature, and the quality of the data sets can vary. We address the issue of variable nomenclature by FAIRifying spatiotemporal PV time series data. Through the creation of a solar power plant ontology, we propose standards for the naming and structure of metadata used to describe the data from these power plants. Using the structure from this ontology, we have developed both R and Python packages for the automation of the FAIRification process. We have also developed an R package that automates the analysis of the quality of a data set through the designation of letter grades. With access to large time series data sets across many power plants, we can utilize spatiotemporal coherence between the sites in order to improve the quality of our data. To solve the issue of data missingness, we propose the use of Spatiotemporal-GNN autoencoders to detect and impute missing values from a data set by utilizing data from power plants nearby.

14 SOLAR ENERGY↗

DOE OSTI2022

Origin of multifractality in solar wind turbulence: the role of current sheets

ABSTRACT In this work, a multifractal framework is proposed to investigate the effects of current sheets in solar wind turbulence. By using multifractal detrended fluctuation analysis coupled with surrogate methods and volatility, two solar wind magnetic field time series are investigated, one with current sheets and one without current sheets. Despite the lack of extreme-events intermittent bursts in the current sheet-free series, both series are shown to be strongly multifractal, although the current sheet-free series displays an almost linear behaviour for the scaling exponent of structure functions. Long-range correlations are shown to be the main source of multifractality for the series without current sheets, while a combination of heavy-tail distribution and non-linear correlations is responsible for multifractality in the series with current sheets. The multifractality in both time series is formally shown to be associated with an energy-cascade process using the p-model.

Gomes, Leonardo F.↗

DOE OSTI2021

Climate Extremes and Variability Surrounding Chesapeake Bay: Past, Present, and Future

Measures of extreme climate variability around Chesapeake Bay have changed over the past century (1895–2014), resulting in the need to establish new baselines for understanding future change. Here, observed climate variability is compared with Coupled Model Intercomparison Project fifth assessment climate models to evaluate ensemble model skill in this region. Observed trends include annual and seasonal declines in the percentage of cold days. Similarly, increases in the annual and seasonal percentages of warm days occurred in all seasons of the North Chesapeake (>38.2°N) but were only significant in spring and summer in the South (<38.2°N) demonstrating regional differences even at local scales. Precipitation intensity increased over the past century. Models using emissions scenarios RCP4.5 and 8.5 project these trends will continue, though they have little skill in precipitation extremes. Pacific and Atlantic climate modes are generally more correlated with climate extremes than mean temperature and precipitation suggesting potential predictability in the synoptic patterns underlying the extremes. However, they also drive the need for time series at least 60-years long for establishing climate trends. This local analysis differs from regional, state level, and local 2.5° × 3.75° grid analyses, highlighting the importance of local climate assessments that consider topographic and regional weather patterns.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

Reference Site Condition Datasets for Floating Wind Arrays in the United States

Floating offshore wind farm design is highly site-specific, requiring detailed information about the specific conditions of a project area for realistic design studies. Unfortunately, publicly available site condition data for potential floating offshore wind project sites in the United States is scarce. To support U.S. offshore wind research, we developed reference site condition datasets, including metocean and seabed information, for four potential floating wind project areas in the U.S.: Humboldt Bay, Morro Bay, the Gulf of Maine, and the Gulf of Mexico. These datasets were compiled using publicly available data. Our metocean analysis, covering wind, waves, and surface currents, utilized measurement data from 2000 to 2020. Sources included the National Renewable Energy Laboratory’s National Offshore Wind Dataset for wind data, National Data Buoy Center buoys for wave data, and the High Frequency Radar Network for surface currents. These data were integrated into hourly time series used to compute extreme return periods up to 500 years, monthly statistics, and joint probability clusters for fatigue analysis. Soil conditions were evaluated using the usSEABED database and bathymetry grids were interpolated from the NCEI Digital Elevation Model Global Mosaic. Further information on the datasets and how they were created can be found in: Biglu, M., M. Hall, E. Lozon, S. Housner. 2024. Reference Site Conditions for Floating Wind Arrays in the United States. Golden, CO: National Renewable Energy Laboratory (NREL). NREL/TP-5000-89897. The data are also available at: https://github.com/FloatingArrayDesign/SiteConditions The content of each dataset is as follows: _NOW23_wind.txt: Hourly NOW-23 wind data up to a height of 400 meter. _metocean_1hr.txt: Hourly time series including wind, wave, surface current and temperature data. _Summary.xlsx: Metocean data, including extreme values, joint probability distributions and monthly statistics. _usSEABED_soil.csv: Extract of the usSEABED database for this specific site. _bathymetry_200m.txt (and 500m, 1000m): Gridded seabed depth data.

16 TIDAL AND WAVE POWER↗

DOE OSTI2021

A Hybrid Energy System Workflow for Energy Portfolio Optimization

This manuscript develops a workflow, driven by data analytics algorithms, to support the optimization of the economic performance of an Integrated Energy System. The goal is to determine the optimum mix of capacities from a set of different energy producers (e.g., nuclear, gas, wind and solar). A stochastic-based optimizer is employed, based on Gaussian Process Modeling, which requires numerous samples for its training. Each sample represents a time series describing the demand, load, or other operational and economic profiles for various types of energy producers. These samples are synthetically generated using a reduced order modeling algorithm that reads a limited set of historical data, such as demand and load data from past years. Numerous data analysis methods are employed to construct the reduced order models, including, for example, the Auto Regressive Moving Average, Fourier series decomposition, and the peak detection algorithm. All these algorithms are designed to detrend the data and extract features that can be employed to generate synthetic time histories that preserve the statistical properties of the original limited historical data. The optimization cost function is based on an economic model that assesses the effective cost of energy based on two figures of merit: the specific cash flow stream for each energy producer and the total Net Present Value. An initial guess for the optimal capacities is obtained using the screening curve method. The results of the Gaussian Process model-based optimization are assessed using an exhaustive Monte Carlo search, with the results indicating reasonable optimization results. The workflow has been implemented inside the Idaho National Laboratory’s Risk Analysis and Virtual Environment (RAVEN) framework. The main contribution of this study addresses several challenges in the current optimization methods of the energy portfolios in IES: First, the feasibility of generating the synthetic time series of the periodic peak data; Second, the computational burden of the conventional stochastic optimization of the energy portfolio, associated with the need for repeated executions of system models; Third, the inadequacies of previous studies in terms of the comparisons of the impact of the economic parameters. The proposed workflow can provide a scientifically defendable strategy to support decision-making in the electricity market and to help energy distributors develop a better understanding of the performance of integrated energy systems.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

DOE OSTI2025

Non-propagating structures and propagating waves in solar wind turbulence revealed by simulations and observations

Structures and waves are common features of solar wind turbulence at various scales. The interplay between structures and waves is important for processes such as the turbulent energy cascade, plasma heating, and particle scattering. Our understanding of turbulence has been advanced by not only new space missions and numerical simulations, but also techniques that have been developed to interpret the rapidly growing turbulence data. We review basic models of turbulence with a specific focus on the analysis methods for understanding magnetic structures and waves. MHD and kinetic waves in single-spacecraft time series measurements can be identified through mode decomposition or their characteristic polarization signatures. The structures in this paper are considered as zero-frequency, non-propagating or convected modes embedded in the solar wind. The synergy between observations and simulations is most evident in the application of spatial-temporal analysis to multi-spacecraft observation and turbulence simulations. The spatial-temporal analysis has greatly improved our understanding of structures and waves in turbulence. We conclude by discussing prospects for future research.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2025

Hydrologic Model Data for the East Fork Poplar Creek Watershed Simulated with the Advanced Terrestrial Simulator (ATS): Streamflow and Network Expansion–Contraction Dynamics

This dataset supports hydrologic modeling and stream network expansion–contraction analysis for the East Fork Poplar Creek (EFPC) Watershed in Tennessee. It includes a Jupyter notebook for model setup, model configuration files, simulation outputs, and derived products used to evaluate model performance and investigate stream dynamics under varying hydrologic conditions. The dataset was generated using the Watershed Workflow Python package and the Advanced Terrestrial Simulator (ATS), enabling integrated surface–subsurface hydrologic simulations using a stream-aligned mesh. Outputs include high-resolution time series of streamflow, active network length, water table depth, and related hydrologic variables. Also included are spatially explicit stream persistency indices and classifications of reaches as perennial or non-perennial. These data facilitate reproducibility and support further research on stream intermittency and variability in network extent.The model data archive is organized in following directories:1) model_setup_inputsContains the Watershed Workflow Jupyter notebooks (accessed through any open source code editor), selected input datasets, and resulting ATS input files, including XML files (access through any open source code editor), computational mesh (.exo files can be viewed using Paraview), and meteorological forcing files (.h5 files can be accessed through h5py python package and HDFView open source software). 2) model_outputsIncludes ATS simulation outputs relevant to this study. Time series of spatially integrated or averaged variables (e.g., streamflow, water table depth) are provided as CSV files. Select spatial fields (e.g., ponded depth and water table depth) are saved as pickled Python objects to reduce file size, and can be accessed through pickle package in Python. Key geometry objects from Watershed Workflow—such as the surface mesh and river tree—are also included to support analysis of streamflow persistency and expansion–contraction dynamics. These files can also be accessed through Watershed Workflow Python package.3) model_evaluationProvides observed streamflow time series and field survey-based flow regime classifications used to evaluate model performance. Jupyter notebooks for processing ATS outputs and comparing model predictions with observations to build confidence in the model prior to scientific analysis are also included.4) Q_L_relationshipsContains workflows for generating time series of discharge, active network length, and related hydrologic variables used in the stream network expansion–contraction analysis. Includes routines for delineating baseflow-dominated periods. For each catchment, notebooks and processed data (as pickled DataFrames accessed through Pandas Python package) are provided. 5) figure_scriptsProvides the Jupyter notebooks used to generate the figures presented in the paper.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

Distinguishing time clustering of astrophysical bursts

Many astrophysical bursts can recur, and their time series structure or pattern could be closely tied to the emission and system physics. While analysis of periodic events is well established, some sources, e.g., some fast radio bursts and soft gamma-ray emitters, are suspected of more subtle and less explored periodic windowed behavior: the bursts themselves are not periodic, but the activity only occurs during periodic windows. Here, we focus on distinguishing periodic windowed behavior from merely clustered events through time clustering analysis, using techniques analogous to spatial clustering, demonstrating methods for identifying and characterizing the behavior. An important aspect is accounting for the “curious incident of the dog in the night time”—lack of bursts carries information. As a worked example, we analyze six years of data from the soft gamma repeater SGR 1935 + 2154 , deriving a window period of 231 days and 55% duty cycle.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2023

Using Host Galaxy Photometric Redshifts to Improve Cosmological Constraints with Type Ia Supernovae in the LSST Era

We perform a rigorous cosmology analysis on simulated Type Ia supernovae (SNe Ia) and evaluate the improvement from including photometric host galaxy redshifts compared to using only the "z spec " subset with spectroscopic redshifts from the host or SN. We use the Deep Drilling Fields (~50 deg 2 ) from the Photometric LSST Astronomical Time-Series Classification Challenge (PLAsTiCC) in combination with a low-z sample based on Data Challenge2. The analysis includes light-curve fitting to standardize the SN brightness, a high-statistics simulation to obtain a bias-corrected Hubble diagram, a statistical+systematics covariance matrix including calibration and photo-z uncertainties, and cosmology fitting with a prior from the cosmic microwave background. Compared to using the z spec subset, including events with SN+host photo-z results in (i) more precise distances for z > 0.5, (ii) a Hubble diagram that extends 0.3 further in redshift, and (iii) a 50% increase in the Dark Energy Task Force figure of merit (FoM) based on the w 0 w a CDM model. Analyzing 25 simulated data samples, the average bias on w 0 and w a is consistent with zero. The host photo-z systematic of 0.01 reduces FoM by only 2% because (i) most z < 0.5 events are in the z spec subset, (ii) the combined SN+host photo-z has ×2 smaller bias, and (iii) the anticorrelation between fitted redshift and color self-corrects distance errors. To prepare for analyzing real data, the next SN Ia cosmology analysis with photo-zs should include non–SN Ia contamination and host galaxy misassociations.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2020

Comprehensive Baseline Environmental Monitoring of an Interim Legacy Waste Store in Arid Zone Australia - 20062

Radionuclide containing soil and rubble from the clean-up of a former uranium, thorium and rare earth minerals processing research facility carried out in the early 50's and 60's is currently stored at the Woomera Test Range in South Australia awaiting final disposal. Prior to developing a final disposal pathway commensurate with waste acceptance criteria, a comprehensive baseline environmental monitoring has been carried out to establish the background radiation levels. The survey included in situ gamma scanning of the surface soil ({sup 238}U, {sup 232}Th, {sup 40}K), a laboratory analysis of 86 soil samples (from 0-20 cm depth), which involved XRF measurements (U, Th, and rare earth metals) and spectroscopic analysis ({sup 238}U, {sup 232}Th, {sup 226}Ra and daughter nuclides). A time series of radon concentration measurements in air was established, while soil radon ({sup 222}Rn) and thoron ({sup 220}Rn) flux measurements were undertaken at 18 different locations. The 2018 comprehensive baseline survey demonstrated radiation levels in the immediate vicinity of the Woomera interim waste store are typical background values of soil and rock. No contamination was detected. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2020

Trends and drivers of marine fish landings in Portugal since its entrance in the European Union

Abstract Marine landings in Portugal have decreased at a higher rate than fishing effort in the last 20 years. Identifying the variables driving the quantity and composition of landings is pivotal to understand the dynamics of the fisheries sector, which entails complex social and environmental aspects. In this study, we investigate the main drivers of marine fish landings in continental Portugal between 1989 and 2014. To identify common trends in time series, and quantify the importance of environmental factors, we applied a dynamic factor analysis considering four regions and three types of gear (trawling, purse-seine, and a multi-gear fishery). Our results show the importance of fishing effort as the most relevant factor driving marine landings in Portugal, both at the long and short terms. In addition, the effect of environmental factors such as the winter river discharge and the spring East Atlantic Teleconnection index should not be neglected, probably through mechanisms affecting coastal productivity. We provide a comprehensive amount of information that permits to improve our understanding of the trends of the most important commercial species in Portugal during the period of study.

Bueno-Pardo, Juan↗

DOE OSTI2020

Database of pharmacokinetic time-series data and parameters for 144 environmental chemicals

Time courses of compound concentrations in plasma are used in chemical safety analysis to evaluate the relationship between external administered doses and internal tissue exposures. This type of experimental data is rarely available for the thousands of non-pharmaceutical chemicals to which people may potentially be unknowingly exposed but is necessary to properly assess the risk of such exposures. In vitro assays and in silico models are often used to craft an understanding of a chemical’s pharmacokinetics; however, the certainty of the quantitative application of these estimates for chemical safety evaluations cannot be determined without in vivo data for external validation. To address this need, we present a public database of chemical time-series concentration data from 567 studies in humans or test animals for 144 environmentally-relevant chemicals and their metabolites (187 analytes total). All major administration routes are incorporated, with concentrations measured in blood/plasma, tissues, and excreta. We also include calculated pharmacokinetic parameters for some studies, and a bibliography of additional source documents to support future extraction of time-series. In addition to pharmacokinetic model calibration and validation, these data may be used for analyses of diferential chemical distribution across chemicals, species, doses, or routes, and for meta-analyses on pharmacokinetic studies.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2024

Hydropower Infrastructure – LAkes, Reservoirs, and RIvers (HILARRI)

HILARRI is a database of links between major datasets of operational hydropower dams and powerplants, and inland water bodies. These connections are critical for conducting large-scale analysis of hydropower infrastructure and their associated natural and engineered water systems. Features include: – Dams from the National Inventory of Dams (2024) and the Global Reservoir and Dam Database (GRanD v1.3) – Hydropower plants from the Existing Hydropower Assets dataset (EHA 2024) These hydropower infrastructure features are linked to several major datasets that provide hydrologic and hydraulic information relevant for analysis of hydropower systems that includes the integral water resources. That information comes from: – Products from the National Hydrography Dataset (NHD) – NHDPlusV2 Medium Resolution river network flowlines, – NHD waterbodies (limited to lakes and reservoirs), – NHD Watershed Boundary Dataset (HUC12-level for the Conterminous United States (CONUS)) – NHD High Resolution waterbodies – HydroLAKES water bodies (lakes and reservoirs) – LAGOS-US lakes and reservoirs – EPA National Lakes Assessment (2007, 2012, 2017, and 2022) – The Reservoir Sedimentation Database (RESSED) Unique identifiers are used to facilitate joining to the original full datasets. For example, characteristics of NHD flowlines such as estimated average flow rate can be joined from the NHDPlusV2 dataset to a dam or power plant listed in HILARRI based on the ID field, “COMID”, that is common to both datasets. HILARRI only includes basic information about identifiers, location, and data quality or usage notes. It does not contain the attributes or time series data associated with these sites. The HILARRI dataset incorporates information from several datasets to facilitate more effective and accurate analysis of hydropower infrastructure and their associated waterbodies. For example, dams were checked against the most recent American Rivers Dam Removal Database to identify and flag facilities that may no longer exist. Additionally, dams that are listed multiple times in the NID are identified and flagged to avoid double-counting when analyzing and summarizing information. Other quality flags include certainty of operational hydropower (i.e., if one or more datasets indicates hydropower at a particular location), whether an associated water body is accurate or composed of multiple polygons, or whether there is a known issue with reported characteristics in one of the underlying datasets. These additional data flags are designed to increase confidence in data usage for individual to large-scale analyses.

13 HYDRO ENERGY↗

DOE OSTI2022

BoxScore - A real-time beam-diagnosis program for the CAEN digitizer x730 series

BoxScore is a real-time beam diagnosis and monitoring program for the CAEN x730 series digitizer, developed for the ATLAS in-flight system at Argonne National Laboratory. The CAEN x730 series digitizer, with built-in Digital Pulse Processing for the Pulse-Height-Analysis, digitizes the input signal in real-time and processes it using a trapezoidal filter. BoxScore reads the digitizer’s buffer directly, builds and saves events to local files, plots histograms for particle identification, and outputs the rates of selected isotopes every second. Implementation of BoxScore has shortened the time needed for in-flight beam-tuning and has potential applications for other nuclear physics experiments.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2024

Reference Site Conditions for Floating Wind Arrays in the United States

17 WIND ENERGY↗

DOE OSTI2023

FIND: A Synthetic weather generator to control drought Frequency, Intensity, and Duration

Water systems worldwide are experiencing climate change-induced shifts in drought properties like frequency, intensity, and duration, affecting water security and reliability. To develop and test effective drought preparedness plans, researchers often use synthetic weather generators to create hydrological scenarios that explore drought variability beyond historical records. Existing weather generators typically allow users to adjust streamflow statistics like percentiles or temporal correlation but do not directly control drought properties of frequency, intensity, and duration. To fill this gap, we propose FIND (Frequency, INtensity, and Duration) synthetic weather generator. FIND incorporates a standardized drought index to directly and in dependently control drought frequency, intensity, and duration in generated streamflow time series while preserving observed hydrological variability. Use cases for FIND include i) water systems analysis applications that seek to train and test drought strategies under historical and plausible future drought conditions, and ii) bottom-up vulnerability studies relating system vulnerability outcomes to specific changes in drought properties of frequency, intensity, and duration. Here, we demonstrate FIND’s versatility through three experiments: replicating historically observed drought properties, generating streamflow scenarios for multiple sites preserving correlation between their drought conditions, and generating a set of scenarios with direct and independent changes in drought properties. FIND source code is openly available for applications beyond the scope of this paper.

42 ENGINEERING↗

DOE OSTI2020

Autotrophic and mixotrophic metabolism of an anammox bacterium revealed by in vivo 13 C and 2 H metabolic network mapping

Anaerobic ammonium-oxidizing (anammox) bacteria mediate a key step in the biogeochemical nitrogen cycle and have been applied worldwide for the energy-efficient removal of nitrogen from wastewater. However, outside their core energy metabolism, little is known about the metabolic networks driving anammox bacterial anabolism and use of different carbon and energy substrates beyond genome-based predictions. Here, we experimentally resolved the central carbon metabolism of the anammox bacterium Candidatus ‘Kuenenia stuttgartiensis’ using time-series 13 C and 2 H isotope tracing, metabolomics, and isotopically nonstationary metabolic flux analysis. Our findings confirm predicted metabolic pathways used for CO 2 fixation, central metabolism, and amino acid biosynthesis in K. stuttgartiensis , and reveal several instances where genomic predictions are not supported by in vivo metabolic fluxes. This includes the use of the oxidative branch of an incomplete tricarboxylic acid cycle for alpha-ketoglutarate biosynthesis, despite the genome not having an annotated citrate synthase. We also demonstrate that K. stuttgartiensis is able to directly assimilate extracellular formate via the Wood–Ljungdahl pathway instead of oxidizing it completely to CO 2 followed by reassimilation. In contrast, our data suggest that K. stuttgartiensis is not capable of using acetate as a carbon or energy source in situ and that acetate oxidation occurred via the metabolic activity of a low-abundance microorganism in the bioreactor’s side population. Together, these findings provide a foundation for understanding the carbon metabolism of anammox bacteria at a systems-level and will inform future studies aimed at elucidating factors governing their function and niche differentiation in natural and engineered ecosystems.

54 ENVIRONMENTAL SCIENCES↗