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Deployment Readiness Framework Subtask 1.1 (Literature Review)

Island and remote coastal communities face some of the most challenging environments for building, operating, and maintaining energy infrastructure, as well as the highest costs for electricity, fuels, and other essential energy sources. As sea-levels rise and storms become more intense and frequent, these communities and the energy infrastructure that supports coastal lives and livelihoods are also at increasing risk from natural hazards. To address these challenges, many coastal communities are envisioning energy solutions that will support the triple bottom line goals of the blue economy: economic growth, environmental sustainability, and social equity. Yet, island and remote coastal communities often face limited resources and capacity to tackle complex energy and coastal resilience issues. To support community-driven energy transitions in island and remote communities, and to better understand relationships between energy, community, and ecosystem resilience, the Department of Energy’s Water Power Technologies Office (WPTO) has initiated the development of a Deployment Readiness Framework (DRF). The objective of the work is to co-produce and test practical tools and approaches that assess the readiness of coastal communities for marine energy demonstration, deployment, and operation. The DRF aims to build on and support the Energy Transitions Initiative Partnership Program (ETIPP) and other community-oriented energy transition programs. This project is jointly led by Pacific Northwest National Laboratory (PNNL) and the National Renewable Energy Laboratory (NREL). The development of the DRF includes three main phases: 1) a learning phase involving stakeholder engagement and literature review to synthesize metrics of community readiness to advance through an energy transition and to understand the state of the research and practice of participatory science-policy processes in various sectors, 2) a design phase to define readiness approaches and tools that will be developed as part of the DRF, and 3) an implementation phase to create the applications and interfaces for WPTO and the national laboratories to interact with the DRF. All three phases include close collaboration with communities and end-users of the framework, first to identify gaps in the science and tools needed to achieve community-driven energy transition goals and second, to test and improve the framework iteratively. Through technical assistance programs like ETIPP and utilizing the completed DRF to understand the influencing factors which motivate or deter energy transitions, WPTO hopes to engage a number of near-term marine energy demonstration opportunities. Here we report on the results from the literature review (Subtask 1.1) to inform the stakeholder engagement (Subtask 1.2) and design phase (Task 2) of the project.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

A Multi-Sensor Unoccupied Aerial System Improves Characterization of Vegetation Composition and Canopy Properties in the Arctic Tundra

Changes in vegetation distribution, structure, and function can modify the canopy properties of terrestrial ecosystems, with potential consequences for regional and global climate feedbacks. In the Arctic, climate is warming twice as fast as compared to the global average (known as ‘Arctic amplification’), likely having stronger impacts on arctic tundra vegetation. In order to quantify these changes and assess their impacts on ecosystem structure and function, methods are needed to accurately characterize the canopy properties of tundra vegetation types. However, commonly used ground-based measurements are limited in spatial and temporal coverage, and differentiating low-lying tundra plant species is challenging with coarse-resolution satellite remote sensing. The collection and processing of multi-sensor data from unoccupied aerial systems (UASs) has the potential to fill the gap between ground-based and satellite observations. To address the critical need for such data in the Arctic, we developed a cost-effective multi-sensor UAS (the ‘Osprey’) using off-the-shelf instrumentation. The Osprey simultaneously produces high-resolution optical, thermal, and structural images, as well as collecting point-based hyperspectral measurements, over vegetation canopies. In this paper, we describe the setup and deployment of the Osprey system in the Arctic to a tundra study site located in the Seward Peninsula, Alaska. We present a case study demonstrating the processing and application of Osprey data products for characterizing the key biophysical properties of tundra vegetation canopies. In this study, plant functional types (PFTs) representative of arctic tundra ecosystems were mapped with an overall accuracy of 87.4%. The Osprey image products identified significant differences in canopy-scale greenness, canopy height, and surface temperature among PFTs, with deciduous low to tall shrubs having the lowest canopy temperatures while non-vascular lichens had the warmest. The analysis of our hyperspectral data showed that variation in the fractional cover of deciduous low to tall shrubs was effectively characterized by Osprey reflectance measurements across the range of visible to near-infrared wavelengths. Therefore, the development and deployment of the Osprey UAS, as a state-of-the-art methodology, has the potential to be widely used for characterizing tundra vegetation composition and canopy properties to improve our understanding of ecosystem dynamics in the Arctic, and to address scale issues between ground-based and airborne/satellite observations.

54 ENVIRONMENTAL SCIENCES↗

What lies beneath: Vertical temperature heterogeneity in a Mediterranean woodland savanna

As the availability of satellite and airborne thermal infrared remote sensing (TIR-RS) data increases and their spatial, temporal, and spectral resolutions improve, researchers are finding diverse applications for TIR-RS measurements. TIR-RS is now commonly applied in regional- and continental-scale analyses, such as those focused on fire and surface energy balance. However, its application lags in plant physiology and ecology, for which a finer-scale understanding of plant canopy temperatures would be useful to elucidate plant water dynamics, for example. In particular, while methods to disaggregate TIR-RS pixels in horizontal space have advanced, possible vertical stratification of plant canopy temperature and its implications for understanding the correspondence between TIR-RS and finer-scale, field-based thermal measurements (e.g. made with a thermal camera) remain unexplored. Here, we use data from a thermal camera deployed concurrently with the recent ECOSTRESS mission to quantify vertical temperature gradients within tree canopies and temperatures of over- vs. under-story plants in a Mediterranean woodland savanna. We then leverage diverse ancillary data to maximize the geometric comparability of ECOSTRESS and thermal camera measurements, in order to assess the extent to which the two forms of thermal measurements correspond. Specifically, we ask: (1) What are the patterns of intra-canopy and over- vs. under-story vertical temperature in a Mediterranean woodland savanna?, and (2) How can vertically-resolved, but spatially-limited field-based temperature measurements be reconciled with spatially-extensive, but surface-only, temperature measurements of a space-borne remote sensor? Further, we found consistent patterns of vertical thermal heterogeneity both within tree canopies and between ecosystem over- and under-stories. The daytime difference between the top and bottom thirds of blue oak canopies was, on average, 0.48 ° C – and sometimes several times larger. Notably, canopy tops are cooler, likely associated with the under-story grass reaching daytime temperatures often exceeding over-story temperatures by 10° C. Given the consistency of the intra-canopy temperature gradients, we expected the ECOSTRESS sensor would be in better agreement with camera measurements of canopy tops than bulk canopies or canopy bottoms. However, within-canopy gradients were overwhelmed by other sources of disagreement between the measurements, in part associated with upscaling camera measurements across space. Overall, thermal camera and ECOSTRESS measurements were largely in agreement at night (pixel RMSE = 1.1°C), but they were more divergent during times of low (but >0 W/m2) and high incoming solar radiation (daytime pixel RMSE = 3.5°C).

54 ENVIRONMENTAL SCIENCES↗

COVID-19 prevention at institutions of higher education, United States, 2020–2021: implementation of nonpharmaceutical interventions

Background, In early 2020, following the start of the coronavirus disease 2019 (COVID-19) pandemic, institutions of higher education (IHEs) across the United States rapidly pivoted to online learning to reduce the risk of on-campus virus transmission. We explored IHEs’ use of this and other nonpharmaceutical interventions (NPIs) during the subsequent pandemic-affected academic year 2020–2021. Methods, From December 2020 to June 2021, we collected publicly available data from official webpages of 847 IHEs, including all public (n = 547) and a stratified random sample of private four-year institutions (n = 300). Abstracted data included NPIs deployed during the academic year such as changes to the calendar, learning environment, housing, common areas, and dining; COVID-19 testing; and facemask protocols. We performed weighted analysis to assess congruence with the October 29, 2020, US Centers for Disease Control and Prevention (CDC) guidance for IHEs. For IHEs offering ≥50% of courses in person, we used weighted multivariable linear regression to explore the association between IHE characteristics and the summated number of implemented NPIs. Results, Overall, 20% of IHEs implemented all CDC-recommended NPIs. The most frequently utilized NPI was learning environment changes (91%), practiced as one or more of the following modalities: distance or hybrid learning opportunities (98%), 6-ft spacing (60%), and reduced class sizes (51%). Additionally, 88% of IHEs specified facemask protocols, 78% physically changed common areas, and 67% offered COVID-19 testing. Among the 33% of IHEs offering ≥50% of courses in person, having < 1000 students was associated with having implemented fewer NPIs than IHEs with ≥ 1000 students. Conclusions, Only 1 in 5 IHEs implemented all CDC recommendations, while a majority implemented a subset, most commonly changes to the classroom, facemask protocols, and COVID-19 testing. IHE enrollment size and location were associated with degree of NPI implementation. Additional research is needed to assess adherence to NPI implementation in IHE settings.

59 BASIC BIOLOGICAL SCIENCES↗

Sensitivity of Optical Satellites to Estimate Windthrow Tree-Mortality in a Central Amazon Forest

Windthrow (i.e., trees broken and uprooted by wind) is a major natural disturbance in Amazon forests. Images from medium-resolution optical satellites combined with extensive field data have allowed researchers to assess patterns of windthrow tree-mortality and to monitor forest recovery over decades of succession in different regions. Although satellites with high spatial-resolution have become available in the last decade, they have not yet been employed for the quantification of windthrow tree-mortality. Here, we address how increasing the spatial resolution of satellites affects plot-to-landscape estimates of windthrow tree-mortality. We combined forest inventory data with Landsat 8 (30 m pixel), Sentinel 2 (10 m), and WorldView 2 (2 m) imagery over an old-growth forest in the Central Amazon that was disturbed by a single windthrow event in November 2015. Remote sensing estimates of windthrow tree-mortality were produced from Spectral Mixture Analysis and evaluated with forest inventory data (i.e., ground true) by using Generalized Linear Models. Field measured windthrow tree-mortality (3 transects and 30 subplots) crossing the entire disturbance gradient was 26.9 ± 11.1% (mean ± 95% CI). Although the three satellites produced reliable and statistically similar estimates (from 26.5% to 30.3%, p < 0.001), Landsat 8 had the most accurate results and efficiently captured field-observed variations in windthrow tree-mortality across the entire gradient of disturbance (Sentinel 2 and WorldView 2 produced the second and third best results, respectively). As expected, mean-associated uncertainties decreased systematically with increasing spatial resolution (i.e., from Landsat 8 to Sentinel 2 and WorldView 2). However, the overall quality of model fits showed the opposite pattern. We suggest that this reflects the influence of a relatively minor disturbance, such as defoliation and crown damage, and the fast growth of natural regeneration, which were not measured in the field nor can be captured by coarser resolution imagery. Our results validate the reliability of Landsat imagery for assessing plot-to-landscape patterns of windthrow tree-mortality in dense and heterogeneous tropical forests. Satellites with high spatial resolution can improve estimates of windthrow severity by allowing the quantification of crown damage and mortality of lower canopy and understory trees. However, this requires the validation of remote sensing metrics using field data at compatible scales.

54 ENVIRONMENTAL SCIENCES↗

Simulating Southern Ocean Aerosol and Ice Nucleating Particles in the Community Earth System Model Version 2

Southern Ocean (SO) low-level mixed phase clouds have been a long-standing challenge for Earth system models to accurately represent. While improvements to the Community Earth System Model version 2 (CESM2) resulted in increased supercooled liquid in SO clouds and improved model radiative biases, simulated SO clouds in CESM2 now contain too little ice. Previous observational studies have indicated that marine particles are major contributor to SO low-level cloud heterogeneous ice nucleation, a process that initiates a number of cloud processes that govern cloud radiative properties. In this study, we utilize detailed aerosol and ice nucleating particle (INP) measurements from two recent measurement campaigns to assess simulated aerosol abundance, number size distributions, and composition and INP parameterizations for use in CESM2. Our results indicate that CESM2 has a positive bias in simulated surface-level total aerosol surface area at latitudes north of 58°S. Measured INP populations were dominated by marine INPs and we present evidence of refractory INPs present over the SO assumed here to be mineral dust INPs. Results highlight a critical need to assess simulated mineral dust number and size distributions in CESM2 in order to adequately represent SO INP populations and their response to long-term changes in atmospheric transport patterns and land use change. Furthermore, we also discuss important cautions and limitations in applying a commonly used mineral dust INP parameterization to remote regions like the pristine SO.

58 GEOSCIENCES↗

Comparative Study of Hydrology and Icemelt in Three Nepal River Basins Using the Glacio-Hydrological Degree-Day Model (GDM) and Observations From the Advanced Scatterometer (ASCAT)

An assessment of the water supply and its seasonal and annual changes over the century in the High Mountain Asia (HMA) region is of increasing interest due to its potential impact on one-sixth of the global population. In order to understand the changing hydrology and snow and ice melt, we used remotely sensed Advanced Scatterometer (ASCAT) observations of glacier melt (GM) and a distributed and gridded Glacio-hydrological Degree-day Model (GDM) in three river basins: Tamor, Trishuli and Marsyangdi. The GDM-estimated contribution of snowmelt, icemelt, rainfall and baseflow in river flows is found to be most accurate in the Trishuli River basin, with Nash-Sutcliffe efficiency (NSE) between the estimated and observed discharges of 0.81 and volume differences of -0.5%, and reasonably accurate in the Tamor River basin, with NSE of 0.69 and volume difference of -7.51%. Similarly, NSE of 0.81 and volume difference of 4.64% in Marsyangdi River basin. We find strong similarities in the timing of glacier melting using the GDM and from observations from the ASCAT GM, determining the seasonal start of glacier melting to within 6 days on average. In all basins ASCAT GM observes melting at higher elevations relative to GDM, average of 5,328 m a.s.l. Systematic differences in glacier melting area determined by modeling and satellite observations indicate ASCAT may have suboptimal resolution, view geometry and/or polarimetry for delineating glacier melting at the process-scale in complex topography, especially in the ablation zone. This is the first step in examining the remote sensing products that could potentially be incorporated into hydrologic models to increase the accuracy of the hydrologic flow as well as the ability to estimate river discharge in other basins with limited data.

54 ENVIRONMENTAL SCIENCES↗

Giant kelp genetic monitoring before and after disturbance reveals stable genetic diversity in Southern California

Given the impacts of climate change and other anthropogenic stressors on marine systems, there is a need to accurately predict how species respond to changing environments and disturbance regimes. The use of genetic tools to monitor temporal trends in populations gives ecologists the ability to estimate changes in genetic diversity and effective population size that may be undetectable by traditional census methods. Although multiple studies have used temporal genetic analysis, they usually involve commercially important species, and rarely sample before and after disturbance. In this study, we run a temporal analysis of giant kelp, Macrocystis pyrifera , genetic diversity over the scope of 10 years (2008-2018) using the same microsatellite marker panel to assess the genetic consequences of disturbance in several populations of giant kelp ( Macrocystis pyrifera ) in the Southern California Bight. The study is a rare pre- and post-disturbance microsatellite analysis that included declines to giant kelp caused by the 2015/16 El Nino Southern Oscillation event. We used canopy biomass estimated by remote sensing (Landsat) to quantify the extent of disturbance to kelp beds, and sea surface temperature data to understand how kelp was pushed towards its temperature limits during this period. Despite prolonged periods with decreased canopy at several sites, no changes in genetic structure and allelic richness were observed. We argue that giant kelp in the region is best described as a “patchy population” system where true extinctions are rare. We discuss how deep refugia of subsurface sporophytes and cryptic microscopic life stages could have kept genetic diversity through disturbance. Given the increasing effects of climate change and uncertainty in modeling impacts of species with cryptic life history stages, we suggest further investigation to reveal the role such stages play in species resilience. Genetic monitoring studies of sites selected by remote census demographic and climate surveys should be continued in the future given the predicted impacts of climate change.

Klingbeil, III, William H.↗

Land-based wind plant wake characterization using dual-Doppler radar measurements at AWAKEN

Wind plant wakes have been shown to persist for tens of kilometers downstream in offshore environments, reducing the power output of neighboring plants, but their behavior on land remains relatively unexplored through observation. This study capitalizes on the unique and extensive field data collected for the American WAKE ExperimeNt (AWAKEN) project underway in northern Oklahoma. X-band dual-Doppler radars deployed at this site measure wind speed and direction at 25-m and 2-min resolution within a 30-km range, capturing the interactions between three neighboring wind plants. These measurements show that the wake of one wind plant extends at least 15 km downstream under easterly wind and stable atmospheric conditions. Though the wake wind speed increases within the first 10 km, it plateaus at 90% of the freestream wind speed. The spanwise velocity distribution within the wake initially shows the clear signature of the wind plant layout, which is smoothed as it propagates downstream, indicating spanwise momentum transfer is a key mechanism in wind plant wake development and recovery. These findings have important implications for wind plant siting decisions and resource assessments, and provide insights into atmospheric interactions at the wind plant scale.

17 WIND ENERGY↗

Automated Extraction of Energy Systems Information from Remotely Sensed Data: A Review and Analysis

We report high quality energy systems information is a crucial input to energy systems research, modeling, and decision-making. Unfortunately, actionable information about energy systems is often of limited availability, incomplete, or only accessible for a substantial fee or through a non-disclosure agreement. Recently, remotely sensed data (e.g., satellite imagery, aerial photography) have emerged as a potentially rich source of energy systems information. However, the use of these data is frequently challenged by its sheer volume and complexity, precluding manual analysis. Recent breakthroughs in machine learning have enabled automated and rapid extraction of useful information from remotely sensed data, facilitating large-scale acquisition of critical energy system variables. Here we present a systematic review of the literature on this emerging topic, providing an in-depth survey and review of papers published within the past two decades. We first taxonomize the existing literature into ten major areas, spanning the energy value chain. Within each research area, we distill and critically discuss major features that are relevant to energy researchers, including, for example, key challenges regarding the accessibility and reliability of the methods. We then synthesize our findings to identify limitations and trends in the literature as a whole, and discuss opportunities for innovation. These include the opportunity to extend the methods beyond electricity to broader energy systems and wider geographic areas; and the ability to expand the use of these methods in research and decision making as satellite data become cheaper and easier to access. We also find that there are persistent challenges: limited standardization and rigor of performance assessments; limited sharing of code, which would improve replicability; and a limited consideration of the ethics and privacy of data.

97 MATHEMATICS AND COMPUTING↗

Improving CLM5.0 Biomass and Carbon Exchange Across the Western United States Using a Data Assimilation System

The Western United States is dominated by natural lands that play a critical role for carbon balance, water quality, and timber reserves. This region is also particularly vulnerable to forest mortality from drought, insect attack, and wildfires, thus requiring constant monitoring to assess ecosystem health. Carbon monitoring techniques are challenged by the complex mountainous terrain, thus there is an opportunity for data assimilation systems that combine land surface models and satellite-derived observations to provide improved carbon monitoring. Here, we use the Data Assimilation Research Testbed to adjust the Community Land Model (CLM5.0) with remotely sensed observations of leaf area and above-ground biomass. The adjusted simulation significantly reduced the above-ground biomass and leaf area, leading to a reduction in both photosynthesis and respiration fluxes. The reduction in the carbon fluxes mostly offset, thus both the adjusted and free simulation projected a weak carbon sink to the land. This result differed from a separate observation-constrained model (FLUXCOM) that projected strong carbon uptake to the land. Simulation diagnostics suggested water limitation had an important influence upon the magnitude and spatial pattern of carbon uptake through photosynthesis. We recommend that additional observations important for water cycling (e.g., snow water equivalent, land surface temperature) be included to improve the veracity of the spatial pattern in carbon uptake. Furthermore, the assimilation system should be enhanced to maximize the number of the simulated state variables that are adjusted, especially those related to the recommended observed quantities including water cycling and soil carbon.

54 ENVIRONMENTAL SCIENCES↗

Mass Optimization of a Multilayered Shield for Transportable Microreactors

The ability to easily transport microreactors is a major selling point for deploying microreactors to remote areas. However, this creates a unique shielding challenge, especially when the microreactor is being shipped after irradiation. A traditional reactor configuration utilizes a separate biological shield and pressure vessel to meet radiological shielding and pressure needs. The limited space available for transportable microreactors for both shielding and pressure vessels requires a revised assessment of separating out the biological shield and pressure vessel. To address these concerns, we examine a nuclear-grade sandwich composite (NGSC) that combines the reactor pressure vessel and biological shielding functions into a single component. Through a series of optimization problems for both transportation and operational use cases, the NGSC is able to minimize dose, minimize the vessel cost, and ensure that weight requirements are met for transportation. Initial results show that using a tungsten-tetraboride cermet in the first two layers of a six-layer NGSC provides adequate shielding for both use cases. These results show promise that an NGSC has enough overlap between operational and transportation cases to help reduce the design space for future analysis and assessment.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

MatLab Package for Whispering Gallery Mode Data

Dye-doped whispering gallery mode resonator (WGMR) microspheres yield highly structured emission spectra that are extremely sensitive to their environment and are of intense interest for use in a variety of sensing applications. Efforts to leverage the unique sensitivities of WGMRs have relied on stringent experimental requirements to correlate specific spectral shifts/changes to an analyte/stimulus such as 1) precise positional knowledge, 2) reference spectra for each microsphere, and 3) high mechanical stability. Consequently, these can hinder adequate mixing or incorporation of analytes and creates challenges for remote sensing. The MATLAB codes provided here are to be used in conjunction with a continuous flow technique for measuring WGM spectra of dye-doped microspheres suspended in solution. One MATLAB script, smooths the data, automatically baseline corrects it to isolate the whispering gallery modes (WGM) from the unwanted bulk emission, and assesses the similarity of each spectrum to aid in selecting a set of unique WGM spectra for further analysis. The next script is designed to analyze WGM spectra to determine the size of the resonator and the refractive index (RI) of its local environment without a priori knowledge of the individual microsphere. The final script allows the user to cluster spheres based on the product of their RI and radius and the contrast ratio of the RI of the sphere material and that of its environment by using a shared nearest neighbor spectral clustering algorithm.

Lilley, Laura↗

Evaluation of Methods for Causal Discovery in Hydrometeorological Systems

Understanding causal relations is of utmost importance in hydrology and climate research for systems identification, prediction, and understanding systems behavior in a changing climate. Traditionally, researchers in hydrometeorology attempted to study causal questions by conducting controlled experiments using numerical models. This approach, however, in most cases of interest provides uncertain results because the models are approximate representation of the natural system. An alternative approach that has recently drawn significant attention in several fields is to infer causal relations from purely observational data. It possesses several traits to its utility particularly in hydrometeorology due to the rapid accumulation of in situ and remotely sensed data records. The first objective of this study is to present a brief description of four causal discovery methods (Granger causality, Transfer Entropy, graph-based algorithms, and Convergent Cross Mapping) with special emphasis on the assumptions on which they are built. Second, using synthetic data generated from a hydrological model, we assess their performance in retrieving causal information taking into account sensitivity to sample size and presence of noise. Last, we use causal analysis to examine and formulate hypotheses on causal drivers of evapotranspiration in a shrubland region during summer and winter seasons. An interpretation of the hypotheses based on canopy seasonal dynamics and evapotranspiration processes is presented. It is hoped that the results presented here can be useful in guiding researchers studying hydrometeorological systems as to which causal method is most appropriate to the characteristics of the system under study.

54 ENVIRONMENTAL SCIENCES↗

Augmentation of WRF-Hydro to simulate overland-flow- and streamflow-generated debris flow susceptibility in burn scars

In steep wildfire-burned terrains, intense rainfall can produce large runoff that can trigger highly destructive debris flows. However, the ability to accurately characterize and forecast debris flow susceptibility in burned terrains using physics-based tools remains limited. Here, we augment the Weather Research and Forecasting Hydrological modeling system (WRF-Hydro) to simulate both overland and channelized flows and assess postfire debris flow susceptibility over a regional domain. We perform hindcast simulations using high-resolution weather-radar-derived precipitation and reanalysis data to drive non-burned baseline and burn scar sensitivity experiments. Our simulations focus on January 2021 when an atmospheric river triggered numerous debris flows within a wildfire burn scar in Big Sur – one of which destroyed California's famous Highway 1. Compared to the baseline, our burn scar simulation yields dramatic increases in total and peak discharge and shorter lags between rainfall onset and peak discharge, consistent with streamflow observations at nearby US Geological Survey (USGS) streamflow gage sites. For the 404 catchments located in the simulated burn scar area, median catchment-area-normalized peak discharge increases by ~ 450 % compared to the baseline. Catchments with anomalously high catchment-area-normalized peak discharge correspond well with post-event field-based and remotely sensed debris flow observations. We suggest that our regional postfire debris flow susceptibility analysis demonstrates WRF-Hydro as a compelling new physics-based tool whose utility could be further extended via coupling to sediment erosion and transport models and/or ensemble-based operational weather forecasts. Given the high-fidelity performance of our augmented version of WRF-Hydro, as well as its potential usage in probabilistic hazard forecasts, we argue for its continued development and application in postfire hydrologic and natural hazard assessments.

54 ENVIRONMENTAL SCIENCES↗

High-Throughput Field Plant Phenotyping: A Self-Supervised Sequential CNN Method to Segment Overlapping Plants

High-throughput plant phenotyping—the use of imaging and remote sensing to record plant growth dynamics—is becoming more widely used. The first step in this process is typically plant segmentation, which requires a well-labeled training dataset to enable accurate segmentation of overlapping plants. However, preparing such training data is both time and labor intensive. To solve this problem, we propose a plant image processing pipeline using a self-supervised sequential convolutional neural network method for in-field phenotyping systems. This first step uses plant pixels from greenhouse images to segment nonoverlapping in-field plants in an early growth stage and then applies the segmentation results from those early-stage images as training data for the separation of plants at later growth stages. The proposed pipeline is efficient and self-supervising in the sense that no human-labeled data are needed. We then combine this approach with functional principal components analysis to reveal the relationship between the growth dynamics of plants and genotypes. We show that the proposed pipeline can accurately separate the pixels of foreground plants and estimate their heights when foreground and background plants overlap and can thus be used to efficiently assess the impact of treatments and genotypes on plant growth in a field environment by computer vision techniques. This approach should be useful for answering important scientific questions in the area of high-throughput phenotyping.

59 BASIC BIOLOGICAL SCIENCES↗

Refining Processing Engines from SAPHIRE: Initialization of Fault Tree/Event Tree Solver

SAPHIRE has been extensively employed for over 35 years to model risk-important systems and quantify risk models. As a well-established and thoroughly documented Probabilistic Risk Assessment (PRA) tool, SAPHIRE has continuously tracked computational trends and received regular updates. Despite its ongoing evolution, there remains a need for further enhancements, particularly in dealing with the quantification of exceptionally large models. These improvements could take the form of algorithmic advancements, harnessing the power of parallel computing, and exploring the potential benefits of cloud computing solutions. Considering these aspirations, the notion of a remote solve option was introduced and subsequently evolved into a dedicated project within the SAPHIRE development team. A significant outcome of this initiative is SAPHSOLVE, an engine extracted from the SageRisk API designed specifically for remote solving capabilities. The ongoing project is nearing its culmination, marked by a series of discoveries that have brought undocumented aspects to light. Among these revelations is the intricacy of the input and output format for the SAPHSOLVE engine. This document serves the crucial purpose of meticulously delineating the precise formats for both input and output, as they form an indispensable foundation. The importance of documenting these formats cannot be overstated, as it is a pivotal step in facilitating rigorous testing and comparison. Whether it involves scrutinizing SAPHSOLVE results against those of the internal integrated solver or other external solvers, the ability to construct models or transform existing ones into a compatible SAPHSOLVE format is imperative. Chapter 1 offers a succinct introduction to both SAPHIRE and SAPHSOLVE, followed by Chapter 2 which outlines the roadmap for enhancing SAPHSOLVE. The core of this report is Chapter 3, which intricately elucidates the intricacies of the input and output file formats. To provide a tangible illustration of these formats, a rudimentary example has been compiled and is available in Appendix. SAPHSOLVE represents a novel external solving mechanism developed by the SAPHIRE team, although it has not yet reached the full spectrum of capabilities possessed by SAPHIRE's internal solver. However, the SAPHIRE team has set a comprehensive course for incorporating the functionalities of SAPHSOLVE. A comprehensive outlook on the future of SAPHSOLVE is expounded upon in Chapter 4.

97 MATHEMATICS AND COMPUTING↗

Sea Ice Collision Risk Assessment for Tidal Turbine Siting in Cook Inlet, Alaska

Cook Inlet has great potential for tidal stream energy development. However, the presence of drifting sea ice could create hazardous collision risks for tidal turbine farms. Before turbines can be installed in Cook Inlet, sites must be surveyed to determine how often sea ice is present, how fast it will be moved by the current, and where the trajectories of drifting sea ice will be concentrated. In this study, we use remotely sensed data to characterize the seasonal sea ice conditions in Cook Inlet, a hydrodynamic model to map the water velocities, and a particle trajectory tracking model to calculate collision risks. The resulting sea ice coverage and collision risk maps will enable tidal energy developers to choose the best locations for the deployment of tidal turbines and other offshore platforms in Cook Inlet.

16 TIDAL AND WAVE POWER↗