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DOE OSTI2022

Evaluation of simulations of near-surface variables using the regional climate model CCLM for the MOSAiC winter period

The ship-based experiment MOSAiC 2019/2020 was carried out during a full year in the Arctic and yielded an excellent data set to test the parameterizations of ocean/sea-ice/atmosphere interaction processes in regional climate models (RCMs). In the present paper, near-surface data during MOSAiC are used for the verification of the RCM COnsortium for Small-scale MOdel–Climate Limited area Mode (COSMO-CLM or CCLM). CCLM is used in a forecast mode (nested in ERA5) for the whole Arctic with 15 km resolution and is run with different configurations of sea ice data. These include the standard sea ice concentration taken from passive microwave data with around 6 km resolution, sea ice concentration from Moderate Resolution Imaging Spectroradiometer (MODIS) thermal infrared data and MODIS sea ice lead fraction data for the winter period. CCLM simulations show a good agreement with the measurements. Relatively large negative biases for temperature occur for November and December, which are likely associated with a too large ice thickness used by CCLM. The consideration of sea ice leads in the sub-grid parameterization in CCLM yields improved results for the near-surface temperature. ERA5 data show a large warm bias of about 2.5°C and an underestimation of the temperature variability.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

Metagenome-assembled genomes from soil samples in control and warming plots in Blodgett Forest, CA (2014-2021)

The pathways of carbon transport and loss through and from soils—soil organic matter (SOM) depolymerization to dissolved organic carbon and mineralization to carbon dioxide (CO2)—are fundamentally driven by microbial activity, which is strongly regulated by environmental conditions. As part of LBNL (Lawrence Berkeley National Laboratory) TES (Terrestrial Ecosystem Science) Belowground Biogeochemistry Science Focus Area (SFA), we have established a novel whole-soil long-term warming experiment at the University of California (UC) Blodgett Forest Research Station (Sierra Nevada) in 2014, where we study the role of biogeochemical, microbial and geochemical process interactions in SOM decomposition and stabilization.Here, we present metagenome-assembled genomes (MAGs) for the bacterial and archaeal community from soil depth profiles collected from 2014 to 2021 from three paired control and warming plots. We collected soil samples across a range of depth profiles (spanning surface to 90 cm deep) from three paired control and warming plots from a temperate mixed forest in Northern California. Each paired plot had been subjected to experimental warming since June 2014 to simulate a predicted climate change scenario for northern California. 101 soil metagenomes were sequenced at JGI (Joint Genome Institute) and UCSF (University of California San Francisco) Center for Advanced Technology and can be found under the JGI (Joint Genome Institute) GOLD (Genomes Online Database) Sequencing project Gs0151586 and NCBI (National Center for Biotechnology Information) Projects PRJNA1225762 and PRJEB39497. Metagenomes were assembled using JGI (Joint Genome Institute) Metagenome Workflow (10.1128/mSystems.00804-20). For each metagenome, the assembled contigs were binned into genomes using 3 binning algorithms (cocacola, metabat, and maxbin) and the resulting bins were consolidated using dastool. The consolidated bins from all metagenomes were pooled, filtered by completeness (>50%) and contamination (<25%), and dereplicated at 99% ANI (average nucleotide identity) using dRep (https://github.com/MrOlm/drep).The dataset includes a zip file of 2321 MAG (Metagenome Assembled Genome) fasta files, the accession numbers for the underlying metagenomes, and a csv file with MAG (Metagenome Assembled Genome) quality metrics and taxonomic classification (GTDB -Genome Taxonomy Database-RS220). This dataset also includes a file-level metadata (flmd.csv) file that lists each file contained in the dataset with associated metadata and a data dictionary (dd.csv) file that contains column/row headers used throughout the files along with a definition, units, and data type. A sample metadata file (samples.csv) that contains site information has also been included.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2026

1H-NMR characterization of soil dissolved organic matter from soil samples in control and warming plots in Blodgett Forest, CA (2014 and 2018)

1H-NMR (nucleic magnetic resonance) spectroscopy↗

DOE OSTI2022

A Brief Overview of Reactive Transport Codes Used in CO 2 Applications

Reactive transport modelling consists of computational and numerical models that describe the coupled physical, chemical, mechanical, and biological processes interacting with each other over a broad range of spatial and temporal scales. This report reviews some of the reactive transport codes available in the literature for carbon dioxide (CO 2 ) applications and can assist the scientific community with the applicability of each code to solve a specific problem. Approaches implemented in these codes can be categorized in three groups: (i) continuum-scale, (ii) pore-scale, and (iii) hybrid-scale approaches. Theoretical foundations, numerical implementations, and application examples using the models are described. In the continuum approach, flow and transport are formulated in terms of a representative control volume of the medium and coupled with geochemical reactions. The medium is characterized by bulk parameters such as porosity, permeability, or reactive surface area. In the pore-scale approach, each point of space in the pore network is occupied by either a fluid or solid phase. The pore-scale approach requires an exact knowledge of the spatial and temporal phase distribution. In the hybrid-scale approach, media are described by multiple characteristic length-scales, with some regions using a pore-scale approach while others used a continuum approach.

01 COAL, LIGNITE, AND PEAT↗

DOE OSTI2022

Models to Incorporate Reaction Mechanisms into DG-OSPREY: Fixed-Bed Simulations for Organic Iodides Capture Using Ag 0 Z

As one of the most potent radioisotopes released during spent nuclear fuel reprocessing, 129 I is strictly regulated and must be removed before discharge. Organic iodides (primarily alkyl iodides with different chain lengths, i.e., CH 3 I, C 4 H 9 I, and C 12 H 25 I) comprise ~2% of the total iodine in the reprocessing off-gases and are primarily present in vessel off-gas (VOG). Reduced silver mordenite (Ag 0 Z) is predominantly considered for the removal of radioiodine; however, its capture performance and underlying interaction processes with long-chain organic iodides are not fully understood. Two major tasks were accomplished in this study. First, to improve upon the previous experimental studies where Ag 0 Z was used to capture CH 3 I, C 4 H 9 I, and C 12 H 25 I at different concentrations, we comprehensively investigated the corresponding capture mechanisms by characterizing fully loaded Ag 0 Z samples. Second, computational codes were implemented to perform fixed-bed simulations that account for transport and reaction mechanisms. Scanning electron microscopy with energy dispersive X-ray analysis (SEM-EDX), powder X-ray diffraction (PXRD), UV-visible diffuse reflectance spectroscopy (UV-vis DRS), and thermogravimetric analysis (TGA) were conducted on Ag 0 Z samples that are saturated with I 2 , CH 3 I, C 4 H 9 I, and C 12 H 25 I), respectively. Results indicate that AgI is the predominant adsorption product regardless of the adsorbed iodine species, yet alkyl iodides with different carbon chain lengths may have different compositions of α- and γ-AgI. Synchrotron pair distribution function (PDF) measurements and TGA coupled with a Fourier transformed infrared detector (TGA FTIR) have been performed, and experimental data are currently analyzed. Results are expected to provide further insights into the adsorption mechanisms. The fixed-bed capture performance for CH 3 I was successfully simulated by solving mathematical equations that describe the underlying transport processes and adsorption reactions. The computational framework, Catalytic After Treatment System (CATS), that was originated in our research group, was used to solve the governing equations. Kinetic parameters, including the pore diffusivity and reaction rate constant were obtained by optimization techniques using data from thin-bed experiments performed at Oak Ridge National Laboratory. The performance of a deep bed predicted using the optimized parameters showed promising agreement with the experimental data.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2024

Dynamic structural determinants in bacterial microcompartment shells

Bacterial microcompartments (BMCs) are polyhedral structures that segregate enzymatic cargo from the cytosol via encapsulation within a protein shell. Unlike other biological polyhedra, such as viral capsids and encapsulins, BMC shells can exhibit a highly advantageous structural and functional plasticity, conforming to a variety of anabolic (CO 2 fixation in carboxysomes) and catabolic (nutrient assimilation in metabolosomes) roles. Consequently, understanding the subunit properties and associated protein–protein interaction processes that guide shell assembly and function is a necessary step to fully harness BMCs as modular, biotechnological nanomachines. Here, we describe the recent insights into the dynamics of structural features of the key BMC domain (Pfam00936)-containing proteins, which serve as a structural template for BMC-H and BMC-T shell building blocks.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2024

CLimate Impact: Determining Etiology thRough pAthways (CLDERA)

Climate impacts have broad economic, health, political, and national security ramifications. Societally relevant impacts are typically farther downstream, are the product of multiple interacting processes, and can arise over small regions and timeframes because their sources are short-term and localized. Short-term forcings (as can be seen in volcanic eruptions, climatic tipping points (e.g., the collapse of rainforests or the disappearance of sea ice), or in increasingly plausible climate interventions) fundamentally possess low signal-to-noise and could benefit from accounting for the multiple conditional processes through which a downstream impact arises. Under the Grand Challenge LDRD CLDERA (CLimate impacts: Discovering Etiology thRough pAthways), we have developed tools to enable downstream impact attribution from geographically and temporally localized source forcings in the climate. CLDERA developed methods that can distinguish how a localized source drives the climate system to respond with particular impacts. The how is embodied in pathways – the spatio-temporally evolving chain of physical processes that connects a source to a series of increasingly distant impacts. Novel analytic methods in pursuit of downstream impact attribution were developed and demonstrated on simulations and observations of the 1991 eruption of Mt. Pinatubo in the Philippines. As described within this report we have • developed stratospheric expertise and aerosol modeling capabilities in E3SM, • created original methods to detect and model pathways from source-to-impact, and • advanced climate attribution through novel methods, cases, and approaches. Further, CLDERA developed a tiered verification process consisting of controlled datasets to prototype, verify, and refine the original method development. CLDERA increased Sandia’s footprint in the climate analytics community and developed new climate collaborations whilst also creating a cadre of climate analysts at Sandia. The products from CLDERA have been extensive with a total of 9 journal articles published, 12 articles submitted and under review, and an additional 8 articles in preparation. We have produced 1750 simulated years and developed 9 code-bases. This report details these accomplishments and serves as a summary of the work completed during the CLDERA Grand Challenge.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2023

Mechanisms of Pacific decadal variability in ESMs: the roles of stochastic forcing, feedbacks & external forcing

This project explored how and why climate patterns in the Pacific Ocean—specifically Pacific Decadal Variability (PDV)—change over time, and how well leading Earth System Models (ESMs) capture these changes under different climate scenarios. By analyzing large climate model datasets and running new simulations, the team investigated how ocean and atmosphere processes interact to shape PDV. The study tested a leading scientific hypothesis using both simplified and complex models, helping to uncover the key mechanisms that drive long-term climate swings in the Pacific. This work improves our ability to detect, predict, and understand how human-driven climate change may influence major ocean-climate patterns in the future.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Analysis of Deformation Mechanisms, Strain Localization, and Fracture in Highly Irradiated Austenitic Steels – Light-Water Reactor Core Materials – via Advanced inSEM Techniques

The present report describes the establishing of an advanced experimental approach – high-resolution digital image correlation or µDIC – for testing miniature irradiated specimens in the ORNL’s Low Activation Materials Development and Analysis (LAMDA) facility. As expected, the µDIC approach will allow for studying strain localization inside grains, for instance, during dislocation channel-grain boundary interaction processes. This information is of high importance for understanding degradation processes in irradiated austenitic steels – in-core materials of Light Water Reactors. The Level 4 report provides a brief introduction, lists materials designated for µDIC testing and delivered in LAMDA this FY, discusses methodical concerns and preliminary observations.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

DOE OSTI2023

Distributed Grid-Sensing Service Layer: A System Architecture Blueprint

In this report, a scalable, decentralized, sensor-oriented communication blueprint is introduced. The proposed architecture has been specifically designed to support the mass deployment of sensors and also enable data consumers to access the underlying data streams using a distributed systems approach. With the proposed approach, sensors and data clients can be decoupled from the physical communication infrastructure and migrated into a modern, software-defined infrastructure ecosystem that can be configured to suit the end application’s requirements. In its current iteration, this blueprint defines the interactions, processes, and expected outcomes that each individual component within the architecture must support the overall ecosystem’s needs. Within this work, such an assembly of services is called the data bus; it represents the heart of the distributed grid sensing services architecture, a multiyear project that aims to design, implement, and test a reference sensor-data dissemination network that can support the needs of the extended grid state. We expect this blueprint to guide our future implementation efforts

24 POWER TRANSMISSION AND DISTRIBUTION↗

DOE OSTI2023

Representation of atmosphere-induced heterogeneity in land–atmosphere interactions in E3SM–MMFv2

In the Energy Exascale Earth System Model (E3SM) Multi-scale Modeling Framework (MMF), where parameterizations of convection and turbulence are replaced by a 2-D cloud-resolving model (CRM), there are multiple options to represent land–atmosphere interactions. Here, we propose three different coupling strategies, namely the (1) coupling of a single land surface model to the global grid (MMF), (2) coupling a single land copy directly to the embedded CRM (SFLX2CRM), and (3) coupling a single copy of land model to each column of the CRM grid (MAML). In the MAML (Multi-Atmosphere Multi-Land) framework, a land model is coupled to CRM at the CRM-grid scale by coupling an individual copy of a land model to each CRM grid. Therefore, we can represent intra-CRM heterogeneity in the land–atmosphere interaction processes. There are 5-year global simulations run using these three coupling strategies, and we find some regional differences but overall small changes with respect to whether a land model is coupled to CRM or a global atmosphere. In MAML, the spatial heterogeneity within CRM induces stronger turbulence, which leads to the changes in soil moisture, surface heat fluxes, and precipitation. However, the differences in the MAML from the other two cases are rather weak, suggesting that the impact of using MAML does not justify the increase in cost.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

NASA NTRS1970

Properties of simple atoms and ions Semiannual reports no. 13, 14, and 15 and quarterly report no. 16, 1 Jan. 1969 - 30 Sep. 1970

Interaction processes between helium ions and atoms

Novick, R.↗

NASA NTRS1973

Role of gas-surface interactions in the reduction of OGO 6 neutral-particle mass spectrometer data

Data obtained with the quadrupole mass spectrometer aboard the OGO 6 satellite show the effects of significant surface interaction processes, including nearly complete recombination of incoming atomic oxygen on the walls of the instrument antechamber plus absorption and desorption of oxygen and carbon monoxide. The observed data are fit by solving the time-dependent continuity equations accounting for production and loss of atomic oxygen, molecular oxygen, and (in the case of mass 28) carbon monoxide. The surface parameters that best fit the data are selected and applied to the determination of ambient densities and their estimated errors.

Hedin, A. E.↗

NASA NTRS1973

Role of gas-surface interactions in the reduction of Ogo 6 neutral particle mass spectrometer data.

Data obtained with the quadrupole mass spectrometer aboard the Ogo 6 satellite show the effects of significant surface interaction processes, including nearly complete recombination of incoming atomic oxygen on the walls of the instrument antechamber plus adsorption and desorption of oxygen and carbon monoxide. The observed data are fit by solving the time-dependent continuity equations accounting for production and loss of atomic oxygen, molecular oxygen, and (in the case of mass 28) carbon monoxide. The surface parameters that best fit the data are selected and applied to the determination of ambient densities and their estimated errors.

Hedin, A. E.↗

NASA NTRS1973

Characteristics of type III exciters derived from low frequency radio observations

Low-frequency radio observations (2.8 MHz to 67 kHz) from the RAE-1 and IMP-6 satellites allow the tracking of type III solar burst exciters out to large distances from the sun (of the order of 1 AU). A study of the interaction processes between the exciter and the interplanetary medium was made using the time-intensity profiles of the radio emission. The change in exciter length with distance from the sun, and the resulting exciter velocity dispersion which can be deduced from this change are investigated. From detailed measurements on 35 simple bursts it is found that the exciter length increases at a faster rate than a constant velocity dispersion would give. The damping of the radio emission is also investigated, and it is concluded that some current theories of the damping mechanism give results which are not consistent with the low-frequency observations.

Evans, L. G.↗

NASA NTRS1974

On the generation of the sequence of diffuse resonances observed on top side ionograms

Two different plasma wave instabilities have been invoked in earlier models for the generation of top side ionogram diffuse resonances. Arguments are presented that support the model based on the Harris instability, i.e., the instability resulting from a sounder-stimulated anisotropic electron velocity distribution. Two modifications to this model are also presented. First, it is only necessary for the instability mechanism to operate for a period of the order of milliseconds (rather than tens of milliseconds) in order to explain the observations. Second, the wave associated with the second harmonic of the electron cyclotron frequency, which enters into the nonlinear wave-wave interaction process included in the model, comes from the side bands of the transmitted sounder pulse rather than from the turbulent state of the plasma caused by the pulse. The second modification provides an explanation for the variation of the time duration observed among the members of the sequence of diffuse resonances.

Benson, R. F.↗

NASA NTRS1975

The surface structure of titanium and its interaction with bromine and chlorine

The surface structure and composition of titanium have been studied by electron diffraction and Auger electron spectroscopy in the temperature range 25 to 850 C. Atomically clean, well-defined Ti surfaces were obtained by a combination of argon ion sputtering and thermal treatment at 700 to 800 C. A series of surface superstructures was observed as the crystal temperature was gradually decreased. The development of the superstructures is best explained as due to surface reconstruction as a result of surface relaxation. The interaction of bromine and chlorine vapors with clean Ti surfaces was investigated in the temperature range 25 to 500 C. Bromine exposure at room temperature gave rise to an amorphous surface layer, which on annealing transformed into an epitaxial TiBr2 structure. Chlorine interaction resulted in the formation of an epitaxial TiCl3 on both cold and hot Ti surfaces. Surface impurities inhibited the chemical interaction process on the Ti surface.

Khan, I. H.↗

NASA NTRS1975

Open-loop response of a burning liquid monopropellant

A direct comparison was obtained between the theoretical and experimental response of a burning liquid monopropellant surface to imposed pressure oscillations. The comparison extended beyond the quasi-steady frequency regime into the range where the combustion process interacts with the thermal wave in the liquid phase. The theory considered both gas and liquid-phase transient effects, involving a numerically integrated, first-order perturbation analysis. The experiment employed hydrazine as the test fuel, burning as a strand. With kinetic parameters fixed by steady burning rate measurements, the model gave good predictions of liquid-phase temperature distributions during steady combustion as well as the amplitude and phase of the oscillatory component of the burning rate in the presence of imposed pressure oscillations. The combustion response tends to peak in two frequency ranges; one corresponding to interaction with liquid-phase transient effects, which could be verified both theoretically and experimentally; the second corresponding to gas-phase transient effects, which could only be examined theoretically. Both ranges provide conditions where the amplifying power is sufficient to drive combustion instability.

Allison, C. B.↗