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At least 235 records · Page 13
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

Life strategies for Aminicenantia in subseafloor oceanic crust

Abstract After decades studying the microbial “deep biosphere” in subseafloor oceanic crust, the growth and life strategies in this anoxic, low energy habitat remain poorly described. Using both single cell genomics and metagenomics, we reveal the life strategies of two distinct lineages of uncultivated Aminicenantia bacteria from the basaltic subseafloor oceanic crust of the eastern flank of the Juan de Fuca Ridge. Both lineages appear adapted to scavenge organic carbon, as each have genetic potential to catabolize amino acids and fatty acids, aligning with previous Aminicenantia reports. Given the organic carbon limitation in this habitat, seawater recharge and necromass may be important carbon sources for heterotrophic microorganisms inhabiting the ocean crust. Both lineages generate ATP via several mechanisms including substrate-level phosphorylation, anaerobic respiration, and electron bifurcation driving an Rnf ion translocation membrane complex. Genomic comparisons suggest these Aminicenantia transfer electrons extracellularly, perhaps to iron or sulfur oxides consistent with mineralogy of this site. One lineage, called JdFR-78, has small genomes that are basal to the Aminicenantia class and potentially use “primordial” siroheme biosynthetic intermediates for heme synthesis, suggesting this lineage retain characteristics of early evolved life. Lineage JdFR-78 contains CRISPR-Cas defenses to evade viruses, while other lineages contain prophage that may help prevent super-infection or no detectable viral defenses. Overall, genomic evidence points to Aminicenantia being well adapted to oceanic crust environments by taking advantage of simple organic molecules and extracellular electron transport.

Environmental Sciences & Ecology↗
DOE OSTI2024

Ocean cavity regime shift reversed West Antarctic grounding line retreat in the late Holocene

Recent geologic and modeled evidence suggests that the grounding line of the Siple Coast of the West Antarctic Ice Sheet (WAIS) retreated hundreds of kilometers beyond its present position in the middle to late Holocene and readvanced within the past 1.7 ka. This grounding line reversal has been attributed to both changing rates of isostatic rebound and regional climate change. Here, we test these two hypotheses using a proxy-informed ensemble of ice sheet model simulations with varying ocean thermal forcing, global glacioisostatic adjustment (GIA) model simulations, and coupled ice sheet-GIA simulations that consider the interactions between these processes. Our results indicate that a warm to cold ocean cavity regime shift is the most likely cause of this grounding line reversal, but that GIA influences the rate of ice sheet response to oceanic changes. This implies that the grounding line here is sensitive to future changes in sub-ice shelf ocean circulation.

58 GEOSCIENCES↗
DOE OSTI2023

Antarctic shelf ocean warming and sea ice melt affected by projected El Niño changes

Antarctic shelf ocean warming affects melt of ice shelf/sheets and sea ice but projected changes vary vastly across climate models. A projected increase in El Niño variability has been found to slow future mid-latitude Southern Ocean warming but how this impacts the Antarctic shelf ocean is unknown. Here we show that a projected increase in El Niño variability accelerates Antarctic shelf ocean warming, hastening ice shelf/sheet melt but slowing sea ice reduction.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Contrasting biological production trends over land and ocean

Terrestrial and marine ecosystems constitute the primary components of the Earth’s biosphere, yet their photosynthetic productions are typically studied separately, which limits understanding of planetary carbon uptake and biosphere health. Here, in this study, using multiple satellite-derived products, we identify contrasting net primary production (NPP) trends between land and ocean, probably reflecting their differential sensitivity to climate warming, especially in tropical regions. Planetary NPP shows an overall increase of 0.11 ± 0.13 PgC yr −1 (P = 0.05) from 2003 to 2021, driven by a significant terrestrial enhancement of 0.20 ± 0.07 PgC yr −1 (P < 0.001) and partially offset by an oceanic decline of −0.12 ± 0.12 PgC yr −1 (P = 0.07). While land contributes to the strong upwards NPP trend, the interannual variability in global NPP is predominantly driven by the ocean, especially during strong El Niño–Southern Oscillation events. Our findings highlight the resilience and potential vulnerability of biosphere primary productivity in a warming climate, calling for integrated land–ocean monitoring and assessment to support climate mitigation initiatives.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Potential use of engineered nanoparticles in ocean fertilization for large-scale atmospheric carbon dioxide removal

Artificial ocean fertilization (AOF) aims to safely stimulate phytoplankton growth in the ocean and enhance carbon sequestration. AOF carbon sequestration efficiency appears lower than natural ocean fertilization processes due mainly to the low bioavailability of added nutrients, along with low export rates of AOF-produced biomass to the deep ocean. Here we explore the potential application of engineered nanoparticles (ENPs) to overcome these issues. Data from 123 studies show that some ENPs may enhance phytoplankton growth at concentrations below those likely to be toxic in marine ecosystems. ENPs may also increase bloom lifetime, boost phytoplankton aggregation and carbon export, and address secondary limiting factors in AOF. Life-cycle assessment and cost analyses suggest that net CO 2 capture is possible for iron, SiO 2 and Al 2 O 3 ENPs with costs of 2–5 times that of conventional AOF, whereas boosting AOF efficiency by ENPs should substantially enhance net CO 2 capture and reduce these costs. Therefore, ENP-based AOF can be an important component of the mitigation strategy to limit global warming.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Latitudinal gradient in the respiration quotient and the implications for ocean oxygen availability

Significance The loss of ocean oxygen caused by climate warming is a serious environmental issue and could lead to major declines in animal habitats. However, current Earth system models struggle in explaining observed trends in global ocean oxygen. Using a model, we demonstrate that marine oxygen concentrations depend sensitively on a rarely considered quantity known as the respiration quotient to prescribe the oxygen consumed per mole of organic carbon respired. Using a combination of direct chemical measurements across major biomes in the eastern Pacific Ocean plus changes in the global distribution of oxygen and carbon, we show how the respiration quotient increases systematically with temperature. The findings imply that we can experience more intense declines in ocean oxygen with warming.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Role of ocean coupling in the weakening of the extratropical storm tracks from Arctic sea ice loss

Abstract Within the changing climate, the Northern Hemisphere storm tracks have been projected to shift poleward and expand eastward. Changes in the Northern Hemisphere storm tracks arise from a variety of sometimes competing effects on the region's baroclinicity. Arctic amplification weakens the meridional temperature gradient, hence weakening the storm track, while low-latitude warming has the opposite effect, and surface-amplified warming at high latitudes reduces static stability. To determine the mechanisms driving these competing changes, we use a hierarchy of models with different levels of ocean-atmosphere coupling, using forcings from the Polar Amplification Model Intercomparison Project (PAMIP) to assess the role of Arctic sea ice loss on the Northern Hemisphere storm tracks. We find that ocean-atmosphere coupling enhances and sharpens the weakening of both the North Atlantic and North Pacific storm tracks in response to Arctic sea ice loss, that surface turbulent heat flux modulates the intensity of the weakening, and that local ocean dynamics controls the meridional location of the response. A moist isentropic diagnostic of the atmospheric overturning circulation shows that most of the weakening of the storm tracks and its associated changes in atmospheric heat transport (AHT) arise from a weakening of the transient eddy mass flux. Poleward of the storm tracks, the AHT also decreases, but through weakened effective stratification rather than weakening mass fluxes, an effect which occurs even in the absence of ocean dynamical coupling.

Audette, Alexandre (ORCID:0000000163321088)↗
DOE OSTI2025

Viroid-like “obelisk” agents are widespread in the ocean and exceed the abundance of RNA viruses in the prokaryotic fraction

Abstract “Obelisks” are recently discovered ribonucleic acid (RNA) viroid-like elements present in diverse environments with no phylogenetic similarity to any known biological agent. obelisks were first identified in the human gut and in a commensal bacterium acting as a replicative host. They have a circular ∼1 kb RNA genome, rod-like secondary structures, and the encoding of a protein superfamily called “Oblins”. We performed a large-scale search of obelisks in the ocean using the Pebblescout program and the transcriptomic Sequence Archive Read databases, revealing the biogeography and abundance of these viroid-like RNA elements. We detected 55 obelisk genomes resulting in 35 marine clusters at the species level. These obelisks were detected in the prokaryotic fraction and to a lesser extent in the eukaryotic fraction, and distributed across all the oceans from surface to mesopelagic including the Arctic, and even in the coldest seawater of Earth beneath the Antarctic Ross Ice Shelf. The obelisk hallmark protein Oblin-1 confirmed by 3D models was found in various marine samples. Some of the detected marine obelisks harbor hammerhead self-cleaving ribozymes in both polarities. In the prokaryotic, but not the eukaryotic, fraction of the Tara Ocean dataset, relative abundance of obelisks calculated by transcriptomic fragment recruitment indicated that they are abundant in marine samples, reaching or even exceeding the relative abundance of the previously discovered uncultured RNA viruses. In conclusion, obelisks are abundant and widespread viroid-like elements that should be included in ocean biogeochemical models.

Environmental Sciences & Ecology↗
DOE OSTI2023

Giant Virus Infection Signatures Are Modulated by Euphotic Zone Depth Strata and Iron Regimes of the Subantarctic Southern Ocean

Viruses can alter the abundance, evolution, and metabolism of microorganisms in the ocean, playing a key role in water column biogeochemistry and global carbon cycles. Large efforts to measure the contribution of eukaryotic microorganisms (e.g., protists) to the marine food web have been made, yet the in situ activities of the ecologically relevant viruses that infect these organisms are not well characterized. Viruses within the phylum Nucleocytoviricota (“giant viruses”) are known to infect a diverse range of ecologically relevant marine protists, yet how these viruses are influenced by environmental conditions remains under-characterized. By employing metatranscriptomic analyses of in situ microbial communities along a temporal and depthresolved gradient, we describe the diversity of giant viruses at the Southern Ocean Time Series (SOTS), a site within the subpolar Southern Ocean. Using a phylogeny-guided taxonomic assessment of detected giant virus genomes and metagenome-assembled genomes, we observed depth-dependent structuring of divergent giant virus families mirroring dynamic physicochemical gradients in the stratified euphotic zone. Analyses of transcribed metabolic genes from giant viruses suggest viral metabolic reprogramming of hosts from the surface to a 200-m depth. Lastly, using on-deck incubations reflecting a gradient of iron availability, we show that modulating iron regimes influences the activity of giant viruses in the field. Specifically, we show enhanced infection signatures of giant viruses under both iron-replete and iron-limited conditions. Collectively, these results expand our understanding of how the water column’s vertical biogeography and chemical surroundings affect an important group of viruses within the Southern Ocean

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

A Statistical Interpolation Code for Ocean Analysis and Forecasting

Abstract We present a data assimilation package for use with ocean circulation models in analysis, forecasting, and system evaluation applications. The basic functionality of the package is centered on a multivariate linear statistical estimation for a given predicted/background ocean state, observations, and error statistics. Novel features of the package include support for multiple covariance models, and the solution of the least squares normal equations either using the covariance matrix or its inverse—the information matrix. The main focus of this paper, however, is on the solution of the analysis equations using the information matrix, which offers several advantages for solving large problems efficiently. Details of the parameterization of the inverse covariance using Markov random fields are provided and its relationship to finite-difference discretizations of diffusion equations are pointed out. The package can assimilate a variety of observation types from both remote sensing and in situ platforms. The performance of the data assimilation methodology implemented in the package is demonstrated with a yearlong global ocean hindcast with a 1/4° ocean model. The code is implemented in modern Fortran, supports distributed memory, shared memory, multicore architectures, and uses climate and forecasts compliant Network Common Data Form for input/output. The package is freely available with an open source license from www.tendral.com/tsis/ .

Srinivasan, Ashwanth↗
DOE OSTI2019

A modular biogeochemical modeling suite for next-generation ocean models (Final Report)

The Marine Biogeochemistry Library (MARBL) is a self-contained implementation of ocean biogeochemistry suitable for incorporation in Earth system models. The default configuration of MARBL represents multiple nutrient co-limitation (N, P, Si, and Fe), includes three explicit phytoplankton functional groups (diatoms, diazotrophs, and pico/nano phytoplankton), and one implicit group (calcifiers); there is one zooplankton group. MARBL includes fully prognostic carbonate chemistry and simulates sinking particulate organic matter implicitly, subject to ballasting by mineral dust, biogenic mineral carbonate and opal. MARBL represents subgrid-scale variations in light, variable C:P stoichiometry, semi-labile and refractory dissolved organic material pools, prognostic oceanic emission of ammonia, and an explicit ligand tracer that complexes iron. MARBL is fully runtime-configurable, and is flexible enough to accommodate a variable number of plankton functional types and ecosystem configurations. Critically, MARBL is implemented to be independent of any particular ocean general circulation model (OGCM); it is a standalone library that interfaces with an OGCM's via an explicit "driver" layer. MARBL can thus be coupled to multiple OGCM's, enabling efficient maintenance, development, and cross-model inter-comparison. MARBL is the ocean biogeochemistry component for the Community Earth System Model and the DOE’s Energy Exascale Earth System Model.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

2020 State of the Science Report, Chapter 1: Marine Renewable Energy and Ocean Energy System

Research, development, and deployment of marine renewable energy (MRE) conversion technologies that harvest all forms of ocean renewable resources are being advanced around the world. The potential benefits derived from capturing the abundant energy of tides, waves, ocean currents, as well as thermal and salinity gradients, continue to drive the development of the emerging MRE industry. Stakeholder understanding of the potential benefits of MRE as a renewable energy source is informed by increased science-based understanding of the potential effects of MRE installations worldwide. The international Ocean Energy Systems (OES)-Environmental collaboration continues to promote global technology cooperation and information exchange to accelerate environmentally acceptable development of viable ocean energy systems. https://tethys.pnnl.gov/publications/state-of-the-science-2020-chapter-1-MRE-OES

13 HYDRO ENERGY↗
DOE OSTI2021

LANL Institutional Computing Highlight: Local Time-Stepping in Global to Regional Ocean Modeling (Annual Report) [Slides]

Multi-resolution global ocean simulations are possible with the Model for Prediction Across Scales-Ocean (MPAS-Ocean), although the model is currently constrained to a uniform time step. The time step is determined by the size of the smallest cell in the grid, according to the CFL condition. To overcome this issue, a local time stepping (LTS) scheme has been designed for MPAS-Ocean. We have made progress on implementing the LTS scheme, as well as quantitative results and performance tests.

58 GEOSCIENCES↗
DOE OSTI2022

Marine Renewable Energy Applications for Restorative Ocean Farming: Kelp

Kelp farming and kelp forest restoration have both been proposed as a solution to locally decrease the impacts of ocean acidification and eutrophication, often with co-benefits to other forms of aquaculture and mariculture. Compared to global markets, the kelp industry in the United States is still in its early phases, with the first commercial kelp farm founded in Casco Bay, Maine in 2010. Since then, interest and effort in kelp production has been increasing, with farms now present in Maine, New Hampshire, Connecticut, Rhode Island, Massachusetts, New York, Washington, and Alaska. Many research projects are underway in the United States to explore benefits of 3D ocean farming, tackle logistical problems of working in the ocean, autonomous farming, and explore viable end uses for kelp products. In seaweed farming, to remove the stored carbon or excess nutrients from the system, the biomass needs to be harvested at the optimal time to avoid the release of CO 2 that comes with decomposition. Timing of the harvest is also important for maximum crop yield, which can vary based on the final product. Additional monitoring needs can include a variety of water quality metrics, growth measurements, and visuals to ensure the health of the farm, comply with permits, support operations and maintenance functions. The variables measured may vary by desired end use of the product, location of farm, and operational design. Monitoring all of these parameters requires specialized devices that can be costly and challenging to maintain. Monitoring devices often face power and logistical constraints that could prevent kelp farmers from adopting these technologies or receiving accurate, efficient monitoring to assess ecosystem benefits and valuation. Marine energy has been identified as a possible power source for these devices. This project investigates the power needs for conducting kelp farm environmental monitoring compared with the available marine energy resource to evaluate if locally generated ocean energy could provide a solution to these monitoring challenges and benefit kelp farmers. This process was structured as follows: 1. Define what data is needed for farmers and their communities through desk research and interviews with end users. 2. Identify sensors and power requirements currently in use or available for commercial purchase. 3. Analyze current kelp and other mariculture farm locations for the potential marine energy resource. 4. Analyze farm designs and associated structures to make recommendations for marine energy design. 5. Quantify value that investment in sensors could provide in terms of carbon credit possibilities.

09 BIOMASS FUELS↗
DOE OSTI2025

Southern Ocean Aerosols Field Campaign Report

Atmospheric processes over the Southern Ocean have a profound influence on regional and global climate. This is a part of the world where global climate models perform particularly poorly, with models persistently overpredicting the amount of sunlight reaching the Earth's surface (Regayre et al. 2020). A major challenge when trying to improve the representation of atmospheric processes in this part of the globe is the scarcity of observations capable of constraining our understanding. During 2024/25 a U.S. Department of Energy Atmospheric Radiation Measurement (ARM) User Facility field campaign (CAPE-k) deployed a suite of instrumentation at the kennaook/Cape Grim atmospheric monitoring station in Tasmania, Australia to provide detailed cloud-aerosol observations in this region in order to address the greatest source of uncertainty in climate models – atmospheric aerosols and how they influence cloud formation (Carslaw et al. 2013). In support of the ARM observations, an Australian Research Council (ARC)-funded project “Southern Ocean aerosols: sources, sinks and impact on cloud properties,” led by the Queensland University of Technology, complemented the ARM measurements with a suite of chemical measurements at the kennaook/Cape Grim site in northwestern Tasmania to provide more information on the processes controlling aerosol formation and growth. The deployment of the University of York LIF-SO2 instrument (Temple et al. 2025) in the ARM mobile facility container was part of this chemistry-focused deployment. Increased observational efforts are critical for understanding sources and sinks of Southern Ocean aerosols, in particular the role of marine micro-organisms (phytoplankton, algae) on aerosols formation, their properties and growth, cloud droplet formation, and the conversion of cloud droplets to ice crystals and precipitation. The observational focus of the ARC-funded project is aerosol chemical composition and their gaseous precursors. The remote nature of the Southern Ocean poses a significant analytical challenge when studying gaseous precursors, as low concentrations are often below the limits of detection of commercial instrumentation. Historically this has meant that observations have had to be time-averaged over days to weeks to achieve the limits of detection required. Although useful when considering overall average levels of aerosol precursors, this time-averaging obscures temporal variability that can provide insight into the controlling processes. Over recent years advances in analytical techniques have made high-time-resolution measurements of key gas-phase aerosol precursors achievable with sufficiently low limits of detection.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

An “Eddy β-Spiral” mechanism for vertical velocity dipole patterns of isolated oceanic mesoscale eddies

Oceanic eddies accompanied by a significant vertical velocity ( w ) are known to be of great importance for the vertical transport of various climatically, biologically or biogeochemically relevant properties. Using quasi-geostrophic w -thinking to extend the classic “ β -spiral” w -theory for gyre circulations to isolated and nearly symmetric oceanic mesoscale eddies, we propose that their w motion will be dominated by a strong east-west dipole pattern with deep ocean penetrations. Contrasting numerical simulations of idealized isolated eddies together with w -equation diagnostics confirm that the w -dipole is indeed dominated by the “eddy β -spiral” mechanism in the β -plane simulation, whereas this w -dipole expectedly disappears in the f -plane simulation. Analyses of relatively isolated warm and cold eddy examples show good agreement with the proposed mechanism. Our studies further clarify eddy vertical motions, have implications for ocean mixing and vertical transport, and inspire further studies.

58 GEOSCIENCES↗
DOE OSTI2025

Ocean liming effect on a North Atlantic microbial community: changes in composition and rates

The ongoing rise in atmospheric CO 2 levels and the consequent global warming make it increasingly difficult to maintain the global temperature within the 1.5 - 2°C target set by the Paris Agreement. Therefore, strategies to remove carbon dioxide from the atmosphere are being developed, with ocean alkalinity enhancement (OAE) gaining most attention. Within OAE, ocean liming- the addition of quicklime (CaO) or hydrated lime (Ca(OH) 2 )- can not only remove CO 2 from the atmosphere but potentially counteract the effects of ocean acidification. Although quite attractive, these technologies have yet to be tested regarding ecological safety and efficacy. Here we report the impacts of ocean liming on the abundance, composition and extracellular enzymatic activity (EEA) rates of a North Atlantic planktonic community. The results demonstrate that OAE led to a decreased phytoplankton development, mainly diatoms. The bacterial response to OAE was community-specific, with a consistent increase in the relative abundance of the order Oceanospirillales. OAE also led to increased EEA rates, especially within the bacterial community. These findings suggest that while initial effects on phytoplankton may be limited, the specific impacts on bacterial groups suggest that OAE could influence the remineralization of organic matter. If our results apply to other communities, OAE might initially affect marine microbial dynamics, but further studies are needed to determine if these effects are long-term.

16S↗
DOE OSTI2022

The Role of Phytoplankton Biomacromolecules in Controlling Ocean Surface Roughness

Satellite altimetric data routinely map sea surface topography by measuring the ocean return signal. One source of altimeter measurement contamination occurs when the radar ocean backscatter becomes unusually large, a situation termed a Sigma-0 bloom. Past research suggests Sigma-0 blooms are associated with weak wind and natural surface slick conditions where capillary waves at the air–sea interface are suppressed. To date, no explicit connection between these conditions and Sigma-0 bloom presence has been provided. Using a series of simplified equations, our reduced model determines capillary wave heights from estimates of planktonic carbon concentrations and regional wind speed. Our results suggest that the radar signal reflection increases as capillary wave height decreases. This relationship depends on surfactant concentration, surfactant composition, and wind speed. Model sensitivity analysis indicates that the interface reflectivity depends on biological activity and wind speed. Our proposed simplified model provides a method to identify potential Sigma-0 bloom regions. We conclude that because of the demonstrated impact of biological surfactants on ocean roughness, it is necessary to consider the biological activity, i.e., phytoplankton bloom events, when interpreting signals from radar altimetry and when developing ocean hydrology models.

54 ENVIRONMENTAL SCIENCES↗