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At least 235 records · Page 13

The impact of long-range dispersal on gene surfing

Range expansions lead to distinctive patterns of genetic variation in populations, even in the absence of selection. These patterns and their genetic consequences have been well studied for populations advancing through successive short-ranged migration events. However, most populations harbor some degree of long-range dispersal, experiencing rare yet consequential migration events over arbitrarily long distances. Although dispersal is known to strongly affect spatial genetic structure during range expansions, the resulting patterns and their impact on neutral diversity remain poorly understood. Here, we systematically study the consequences of long-range dispersal on patterns of neutral variation during range expansion in a class of dispersal models which spans the extremes of local (effectively short-ranged) and global (effectively well-mixed) migration. We find that sufficiently long-ranged dispersal leaves behind a mosaic of monoallelic patches, whose number and size are highly sensitive to the distribution of dispersal distances. We develop a coarse-grained model which connects statistical features of these spatial patterns to the evolution of neutral diversity during the range expansion. We show that growth mechanisms that appear qualitatively similar can engender vastly different outcomes for diversity: Depending on the tail of the dispersal distance distribution, diversity can be either preserved (i.e., many variants survive) or lost (i.e., one variant dominates) at long times. Our results highlight the impact of spatial and migratory structure on genetic variation during processes as varied as range expansions, species invasions, epidemics, and the spread of beneficial mutations in established populations.

59 BASIC BIOLOGICAL SCIENCES↗

Measurements of radial neutral density profiles from Balmer- α emission in Wendelstein 7-X

Radial neutral density profiles are estimated from measurements of passive H α emission in the Wendelstein 7-X stellarator. To parametrize the generally three-dimensional distribution with a low number of degrees of freedom, the neutral density is reduced to a flux surface quantity. Accounting for emission from excitation and recombination processes, neutral density profiles are derived independently for each of the available lines of sight. Density profiles obtained from the different viewing geometries are found to vary within one order of magnitude. Toroidally oriented lines of sight predict systematically lower neutral densities when compared to poloidally oriented ones. This discrepancy is attributed to the simplifications inherent in the imposed model and significant differences in integration volumes across the viewing geometries. In line with expectations, obtained neutral densities are found to decrease with increasing plasma density. Key restrictions of the model include the reduction of the neutral density to a flux surface quantity, uncertainties in the plasma profiles and instrument function, and line integration effects outside the last closed flux surface.

Wendelstein 7-X↗

Impurity transport in PISCES-RF

Linear plasma devices (LPD) utilizing a helicon plasma source, a high density light ion source, can generate impurities due to progressive erosion of the radio frequency (RF) transmission window caused by rectified sheath voltage. These source-born impurities can entrain and be transported by the plasma toward a target, affecting plasma-material interaction studies. Earlier work on material testing in Prototype-Materials Plasma Exposure eXperiment at ORNL revealed significant source impurity deposition on downstream targets. However, using a similar RF source, no target impurity deposition is observed in Plasma Interaction Surface Component Experimental Station (PISCES)-RF despite evidence of RF window erosion in the source region, thereby motivating the present work. Experimentally, using various magnetic field configurations upstream of the PISCES-RF plasma source and seeding titanium (Ti) impurities at various axial locations, impurity transport and deposition along the machine axis were investigated. It was found that Ti deposition was localized to the side of the plasma source where the Ti impurity was seeded. In contrast, aluminum (Al) deposition, originating from the sputtering of the helicon window, occurred predominantly upstream of the plasma source, suggesting an asymmetry in the axial transport of eroded RF window material. These observations suggest a stagnation of the parallel plasma flow immediately downstream of the plasma source, with impurity ions remaining unmagnetized near the source upstream. Al deposition in magnetic field-free regions in PISCES-RF indicates that sputtered Al impurities likely remained neutral due to their large ionization mean-free path under PISCES-RF conditions. Plasma modeling and simulation supported this, indicating that Al-neutrals transport toward the helicon source upstream for low electron density cases. It was found that the Larmor radius of the Al ions was greater than the plasma radius towards the source upstream and remained weakly magnetized in PISCES-RF, meaning that plasma source-born impurities are not efficiently entrained in the plasma flow. These findings provide critical insights into impurity transport in helicon plasma-based LPDs.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Quantifying the contribution of Fc-mediated effector functions to the antiviral activity of anti–HIV-1 IgG1 antibodies in vivo

In combating viral infections, the Fab portion of an antibody could mediate virus neutralization, whereas Fc engagement of Fc-γ receptors (FcγRs) could mediate an array of effector functions. Evidence abounds that effector functions are important in controlling infections by influenza, Ebola, or HIV-1 in animal models. However, the relative contribution of virus neutralization versus effector functions to the overall antiviral activity of an antibody remains unknown. To address this fundamental question in immunology, here we utilized our knowledge of HIV-1 dynamics to compare the kinetics of the viral load decline (ΔVL) in infected animals given a wild-type (WT) anti–HIV-1 immunoglobulin G1 (IgG1) versus those given a Fc-Null variant of the same antibody. In three independent experiments in HIV-1–infected humanized mice and one pivotal experiment in simian–human immunodeficiency virus (SHIV)-infected rhesus macaques, an earlier and sharper decline in viral load was consistently detected for the WT antibody. Quantifications of the observed differences indicate that Fc-mediated effector functions accounted for 25–45% of the total antiviral activity in these separate experiments. In this study, Fc-mediated effector functions have been quantified in vivo relative to the contribution of virus neutralization mediated by the Fab.

60 APPLIED LIFE SCIENCES↗

Low-Temperature Plasma Assisted Kinetics Study of Ethanol

Non-equilibrium plasma assisted kinetics of ethanol at 0.5 atm over a temperature range of 523-1203 K were studied at stoichiometric conditions by using a plasma flow reactor (PFR). The effects of plasma chemistry on fuel and its influence on neutral chemistry is decoupled with both experimental and modelling efforts. Enhanced reactivity was observed experimentally in both plasma-assisted oxidation and pyrolysis cases with fuel consumption beginning at temperatures as low as 523 K. Absolute fuel consumption was observed at temperatures nearly 200 K earlier than pure thermal reactions highlighting the effectiveness of non-equilibrium plasma to promote reactivity. Furthermore, modelling results illustrated the effect of electron impact reactions towards accelerating fuel consumption and promoting low temperature chemistry by generating excited state N2 and reactive O and OH radicals.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

The role of ionic blockades in controlling the efficiency of energy recovery in forward bias bipolar membranes

Limited understanding exists about the operation of bipolar membranes (BPMs) in forward bias to convert protonic gradients into electrical work, despite their emerging role in many electrochemical devices. In these device contexts, the BPM is typically exposed to complex electrolyte mixtures, but their impact on polarization remains poorly understood. Here, for this work, we develop a mechanistic model explaining the forward bias polarization behaviour of BPMs in mixed electrolytes with different acidities/basicities. This model invokes that weak acids/bases accumulate in the BPM and impose an ionic blockade that inhibits the recombination of stronger acids/bases, resulting in a substantial neutralization overpotential. We demonstrate the utility of our model for fuel cells and redox flow batteries and introduce two materials design strategies for mitigating this inhibition. Lastly, we apply our findings to enhance the energy efficiency of carbonate management in CO 2 electrolysers. This work highlights how non-equilibrium local environments at membrane–membrane interfaces can define the efficiency of protonic-to-electrical energy conversion.

25 ENERGY STORAGE↗

Charge Regulation Stabilizes the Formation of Ionic Liquid‐Based Amphiphilic Oligomer Droplet Interface Bilayers

Amphiphilic charged oligomers (oligodimethylsiloxane – methylimidazolium cation, ODMS-MIM (+) ), assemble into bilayers using the droplet interface bilayer (DIB) platform, possess similar size and functionality as phospholipid bilayers, but exhibit increased stability. The oligomer ionic headgroups (MIM (+) ) are covalently bound to monodisperse, short-chain (n = 13) hydrophobic tails (ODMS). These self-assemble as monolayer brushes at the oil–aqueous interface of water droplets that are influenced by both the charged cationic headgroups, and the nature of the covalently attached tails in the organic phase. Charge regulation (CR) stabilizes the formation of ordered, molecularly close-packed brush phases, which results in highly insulating, stable DIB membranes, with contributions from specific ion-pairing effects, Debye screening, and voltage-dependent electrocompressive stresses. In the oil phase, interactions between hexadecane, a good solvent for ODMS, and the hydrophobic tails result in extended waiting times for bilayer formation compared to phospholipid DIBs, for which hexadecane is a poor solvent. Close agreement between experimental values and predictions for two key parameters, the critical membrane thickness, h c , and maximal grafted headgroup density, Γ 0 , validate an electrostatic CR model consisting of adsorption and partial neutralization of counterions at a charged interface.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Plateau–Rayleigh instability with a grain boundary twist

We demonstrate using theoretical, computational, and experimental studies a morphological instability, in which a polycrystalline nanorod breaks up at grain boundaries (GBs) into an array of isolated domains. Our theoretical model is used to establish a neutral stability surface demarcating stable and unstable perturbations. It is shown that GBs play a destabilizing role in which the critical wavelength for the instability decreases with the increase in the GB energy. We carry out phase field simulations, which reveal accelerated pinch-off kinetics with the increase in the GB energy and predict temporal evolution of interfacial profiles in quantitative agreement with experimental observations.

Hussein, Omar↗

Isotope physics of heat and particle transport with tritium in JET-ILW type-I ELMy H-mode plasmas

As part the DTE2 campaign in the JET tokamak, we conducted a parameter scan in T and D-T complementing existing pulses in H and D. For the different main ion masses, type-I ELMy H-modes at fixed plasma current and magnetic field can have the pedestal pressure varying by a factor of 4 and the total pressure changing from <?CDATA $\beta_{\mathrm{N}} = 1.0$?> β N = 1.0 to 3.0. We investigated the pedestal and core isotope mass dependencies using this extensive data set. The pedestal shows a strong mass dependence on the density, which influences the core due to the strong coupling between both plasma regions. To better understand the causes for the observed isotope mass dependence in the pedestal, we analysed the interplay between heat and particle transport and the edge localised mode (ELM) stability. For this purpose, we developed a dynamic ELM cycle model with basic transport assumptions and a realistic neutral penetration. The temporal evolution and resulting ELM frequency introduce an additional experimental constraint that conventional quasi-stationary transport analysis cannot provide. Our model shows that a mass dependence in the ELM stability or in the transport alone cannot explain the observations. One requires a mass dependence in the ELM stability as well as one in the particle sources. The core confinement time increases with pedestal pressure for all isotope masses due to profile stiffness and electromagnetic turbulence stabilisation. Interestingly, T and D-T plasmas show an improved core confinement time compared to H and D plasmas even for matched pedestal pressures. For T, this improvement is largely due to the unique pedestal composition of higher densities and lower temperatures than H and D. With a reduced gyroBohm factor at lower temperatures, more turbulent drive in the form of steeper gradients is required to transport the same amount of heat. This picture is supported by quasilinear flux-driven modelling using TGLF -SAT2 within Astra . With the experimental boundary condition TGLF -SAT2 predicts the core profiles well for gyroBohm heat fluxes <?CDATA ${\gt}15$?> > 15 , however, overestimates the heat and particle transport closer to the turbulent threshold.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

The scoping, design, and plasma physics optimization of the Eos neutron source stellarator

On the path to a fusion pilot plant, Thea Energy plans to build Eos, a sub-breakeven, deuterium-deuterium, beam-target fusion, stellarator neutron source facility for producing tritium and other valuable radioisotopes. In this paper, a set of 1D plasma physics models are coupled and used to design the operating point of the facility and predict performance. At this foundational stage of the design, analytic and approximate models are sufficient to capture the leading-order effects, and fast enough to run in the inner loop of an optimizer. Higher-fidelity analyses will follow. Models of 1D profile-dependent neutral beam stopping, ion beam slowing down, beam-target fusion, electron-ion classical heat transfer, energy confinement (ISS04), beam pressure, beam heating of ions and electrons, beam-beam fusion fraction, and neutral beam injection and gyrotron heating electrical efficiencies are included. A numerical optimizer is used to determine the minimum required facility electric power to generate tritium at a given rate. A potentially advantageous regime is described in which modern precisely-quasisymmetric stellarators, new high-temperature superconductors, ITER-derived neutral beam injection, and new high-frequency gyrotrons enable a suitible target plasma with hot electrons, cold ions, peaked density and temperature profiles, and high beam-injected ion density. It appears possible at this time for a facility with a medium-scale and medium-strength stellarator whose required facility electric power is less than 40 MW to produce $2.5\times 10^{17}$ neutrons s -1 for the production of radioisotopes. With the addition of a tritium breeding blanket, such a facility could produce 0.2 grams d -1 or 70 grams yr -1 of tritium.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Panorama of new-physics explanations to the MiniBooNE excess

The MiniBooNE low-energy excess stands as an unexplained anomaly in short-baseline neutrino oscillation experiments. It has been shown that it can be explained in the context of dark sector models. Here, we provide an overview of the possible new-physics solutions based on electron, photon, and dilepton final states. We systematically discuss the various production mechanisms for dark particles in neutrino-nucleus scattering. Our main result is a comprehensive fit to the MiniBooNE energy spectrum in the parameter space of dark neutrino models, where short-lived heavy neutral leptons are produced in neutrino interactions and decay to e + e - pairs inside the detector. For the first time, other experiments will be able to directly confirm or rule out dark neutrino interpretations of the MiniBooNE low-energy excess.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

A molecular mediator for reductive concerted proton-electron transfers via electrocatalysis

Electrocatalytic approaches to the activation of unsaturated substrates via reductive concerted proton-electron transfer (CPET) must overcome competing, often kinetically dominant hydrogen evolution. We introduce the design of a molecular mediator for electrochemically triggered reductive CPET through the synthetic integration of a Brønsted acid and a redox mediator. Cathodic reduction at the cobaltocenium redox mediator substantially weakens the homolytic nitrogen-hydrogen bond strength of a Brønsted acidic anilinium tethered to one of the cyclopentadienyl rings. The electrochemically generated molecular mediator is demonstrated to transform a model substrate, acetophenone, to its corresponding neutral α-radical via a rate-determining CPET.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Updating the BNB Flux Prediction at SBND

Precise, accurate neutrino flux predictions for neutrino beam experiments are crucial for physics results. Flux uncertainties contribute significantly to the total systematic uncertainties seen in modern accelerator neutrino measurements such as cross sections, oscillations, and BSM studies.. For over a decade, experiments utilizing Fermilab’s Booster Neutrino Beam (BNB) have relied on the 2009 MiniBooNE flux prediction. However, the high-statistics era of the Short-Baseline Neutrino (SBN) program, with both SBND and ICARUS now operating, demands a modernized flux model and framework. While SBND is using the MiniBooNE flux model for its Generation 1 analyses, including many upcoming cross section measurements, future work will be based on a new flux model. In this talk, the ongoing work towards this new model will be outlined, including a new simulation framework (G4BNB), a new evaluation of model parameters from hadron scattering data, and a new framework for evaluating systematic uncertainties (BNBFP). Additionally, expansions to the flux model to include BSM contributions from neutral mesons will be discussed, as well as the PRISM capabilities of SBND to observe a wide range of off axis angles of the neutrino beam.

Paton, Josephine [Fermilab]↗

Updating the BNB Flux Prediction at SBND

Precise, accurate neutrino flux predictions for neutrino beam experiments are crucial for physics results. Flux uncertainties contribute significantly to the total systematic uncertainties seen in modern accelerator neutrino measurements such as cross sections, oscillations, and BSM studies.. For over a decade, experiments utilizing Fermilab’s Booster Neutrino Beam (BNB) have relied on the 2009 MiniBooNE flux prediction. However, the high-statistics era of the Short-Baseline Neutrino (SBN) program, with both SBND and ICARUS now operating, demands a modernized flux model and framework. While SBND is using the MiniBooNE flux model for its Generation 1 analyses, including many upcoming cross section measurements, future work will be based on a new flux model. In this talk, the ongoing work towards this new model will be outlined, including a new simulation framework (G4BNB), a new evaluation of model parameters from hadron scattering data, and a new framework for evaluating systematic uncertainties (BNBFP). Additionally, expansions to the flux model to include BSM contributions from neutral mesons will be discussed, as well as the PRISM capabilities of SBND to observe a wide range of off axis angles of the neutrino beam.

Paton, Josephine [Fermilab]↗

Future Sterile Neutrino Searches in NOvA using the Booster Neutrino Beam

The NOvA experiment’s most recent search for eV-scale sterile neutrinos under a 3+1 model simultaneously analyses muon neutrino and neutral current datasets from the NuMI beam at it's Near ($\sim$1 km baseline) and Far (810 km baseline) detectors to look for oscillations consistent with a sterile neutrino. The analysis is systematically limited in the region of parameter space where $\Delta m^{2}_{41} $>~1 eV^2$. This region of parameter space is preferred by sterile neutrino interpretations of current experimental anomalies and so improving sensitivity here is high-priority. The Near Detector’s position on-site at Fermilab means that it is also able to observe neutrinos from a second neutrino beam, the BNB, 160 mrad off-axis. This data probes a similar L/E to the NuMI data, but using a different neutrino energy, and being subject to different beam-related uncertainties. Jointly analysing these datasets can help us to constrain our systematic uncertainties, improving our sensitivity. NOvA has been taking BNB data since 2015, but has not yet analysed these data. This poster will present first sensitivities from the combined analysis of the BNB and NuMI datasets.

Lister, Adam [U. Wisconsin, Madison (main)]↗

NOvA's Current and Future Sterile Neutrino Searches

The NOvA experiment's most recent search for eV-scale sterile neutrinos under a 3+1 model simultaneously analyses muon neutrino and neutral current datasets from the NuMI beam at its Near ($\sim$\qty1{km} baseline) and Far (\qty{810}{km} baseline) detectors to look for oscillations consistent with a sterile neutrino. The analysis is systematically limited in the region of parameter space where $Δm^2_{41} \gtrsim 1~\mathrm{eV}^2$. This region of parameter space is preferred by sterile neutrino interpretations of current experimental anomalies and so improving sensitivity here is high-priority. These proceedings present our current search strategy, and discusses future plans to include data from a second beamline, the Booster Neutrino Beam, to improve our sensitivity in systematics-dominated regions of parameter space.

Lister, Adam [Wisconsin U., Madison; Virginia Tech↗

Multiscale affinity maturation simulations to elicit broadly neutralizing antibodies against HIV

The design of vaccines against highly mutable pathogens, such as HIV and influenza, requires a detailed understanding of how the adaptive immune system responds to encountering multiple variant antigens (Ags). Here, we describe a multiscale model of B cell receptor (BCR) affinity maturation that employs actual BCR nucleotide sequences and treats BCR/Ag interactions in atomistic detail. We apply the model to simulate the maturation of a broadly neutralizing Ab (bnAb) against HIV. Starting from a germline precursor sequence of the VRC01 anti-HIV Ab, we simulate BCR evolution in response to different vaccination protocols and different Ags, which were previously designed by us. The simulation results provide qualitative guidelines for future vaccine design and reveal unique insights into bnAb evolution against the CD4 binding site of HIV. Our model makes possible direct comparisons of simulated BCR populations with results of deep sequencing data, which will be explored in future applications.

Conti, Simone (ORCID:000000017986567X)↗