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At least 235 records · Page 13

Production and characterization of monoclonal antibodies to budgerigar fledgling disease virus major capsid protein VP

Eleven hybridoma cell lines producing monoclonal antibodies (MAbs) against intact budgerigar fledgling disease (BFD) virions were produced and characterized. These antibodies were selected for their ability to react with BFD virions in an enzyme-linked immunosorbent assay. Each of these antibodies was reactive in the immunofluorescent detection of BFD virus-infected cells. These antibodies immunoprecipitated intact virions and specifically recognized the major capsid protein, VP1, of the dissociated virion. The MAbs were found to preferentially recognize native BFD virus capsid protein when compared with denatured virus protein. These MAbs were capable of detecting BFD virus protein in chicken embryonated cell-culture lysates by dot-blot analysis.

Non-NASA Center↗

Analysis of Low RRR SRF Cavities

Recent findings in the superconducting radio-frequency (SRF) community have shown that introducing certain impurities into high-purity niobium can improve quality factors and accelerating gradients. Success has been found in nitrogen-doping, diffusion of the native oxide into the niobium surface, and thin films of alternate superconductors atop a niobium bulk cavity. We question why some impurities improve RF performance while others hinder it. The purpose of this study is to characterize the impurity profile of niobium with a low residual resistance ratio (RRR) and correlate these impurities with the RF performance of low RRR cavities so that the mechanism of recent impurity-based improvements can be better understood and improved upon. Additionally, we perform a low temperature bake on the low RRR cavity to evaluate how the intentional addition of oxygen to the RF layer affects performance. We have found that low RRR cavities experience low temperature-dependent BCS resistance behavior more prominently than their high RRR counterparts. The results of this study have the potential to unlock a new understanding on SRF materials.

43 PARTICLE ACCELERATORS↗

Analysis of Low RRR SRF Cavities

Recent findings in the superconducting radio-frequency (SRF) community have shown that introducing certain impurities into high-purity niobium can improve quality factors and accelerating gradients. Success has been found in nitrogen-doping, diffusion of the native oxide into the niobium surface, and thin films of alternate superconductors atop a niobium bulk cavity. We question why some impurities improve RF performance while others hinder it. The purpose of this study is to characterize the impurity profile of niobium with a low residual resistance ratio (RRR) and correlate these impurities with the RF performance of low RRR cavities so that the mechanism of recent impurity-based improvements can be better understood and improved upon. Additionally, we performed surface treatments, low temperature baking and nitrogen-doping, on low RRR cavities to evaluate how the intentional addition of more impurities to the RF layer affects performance. We have found that low RRR cavities experience low temperature-dependent BCS resistance behavior more prominently than their high RRR counterparts. The results of this study have the potential to unlock a new understanding on SRF materials.

43 PARTICLE ACCELERATORS↗

Lunar and Planetary Science XXXV: Astrobiology

The presentations in this session are: 1. A Prototype Life Detection Chip 2. The Geology of Atlantis Basin, Mars, and Its Astrobiological Interest 3. Collecting Bacteria Together with Aerosols in the Martian Atmosphere by the FOELDIX Experimental Instrument Developed with a Nutrient Detector Pattern: Model Measurements of Effectivity 4. 2D and 3D X-ray Imaging of Microorganisms in Meteorites Using Complexity Analysis to Distinguish Field Images of Stromatoloids from Surrounding Rock Matrix in 3.45 Ga Strelley Pool Chert, Western Australia 4. Characterization of Two Isolates from Andean Lakes in Bolivia Short Time Scale Evolution of Microbiolites in Rapidly Receding Altiplanic Lakes: Learning How to Recognize Changing Signatures of Life 5. The Effect of Salts on Electrospray Ionization of Amino Acids in the Negative Mode 6. Determination of Aromatic Ring Number Using Multi-Channel Deep UV Native Fluorescence 7. Microbial D/H Fractionation in Extraterrestrial Materials: Application to Micrometeorites and Mars 8. Carbon Isotope Characteristics of Spring-fed Iron-precipitating Microbial Mats 9. Amino Acid Survival Under Ambient Martian Surface UV Lighting Extraction of Organic Molecules from Terrestrial Material: Quantitative Yields from Heat and Water Extractions 10. Laboratory Detection and Analysis of Organic Compounds in Rocks Using HPLC and XRD Methods 11. Thermal Decomposition of Siderite-Pyrite Assemblages: Implications for Sulfide Mineralogy in Martian Meteorite ALH84001 Carbonate Globules 12. Determination of the Three-Dimensional Morphology of ALH84001 and Biogenic MV-1 Magnetite: Comparison of Results from Electron Tomography and Classical Transmission Electron Microscopy 13. On the Possibility of a Crypto-Biotic Crust on Mars Based on Northern and Southern Ringed Polar Dune Spots 14. Comparative Planetology of the Terrestrial Inner Planets: Implications for Astrobiology 15. A Possible Europa Exobiology 16. A Possible Biogeochemical Model for Titan

Source record↗

Sputtering and native oxide formation on (110) surfaces of Cd(1-x)Mn(x)Te

Native oxides on the surface of Cd(1-x)Mn(x)Te (X between 0 and 0.7) have been analyzed on the basis of X-ray photoemission spectroscopy measurements. Depth profile analysis revealed a significant increase in the thickness at higher Mn concentrations and a strong Mn segregation to the surface, respectively. Sputter-induced damage on cleaved (110)-oriented surfaces was analyzed by photoreflectance and photoluminescence measurements. The damage was found to be larger on CdTe than on the alloy. Thermal annealing showed nearly complete restoration for the surface of the alloy, while CdTe revealed irreversible modifications in the near-surface regime upon sputtering and post annealing.

Neff, H.↗

Unalakleet Climate: Analyzing Permafrost Degradation and Drainage Networks in Unalakleet, Alaska

The coastal community of Unalakleet is currently the 8th most at-risk community in Alaska due to the adverse effects of climate change that include permafrost degradation, severe coastal erosion, and sea-level rise-induced flood inundation caused by increasingly frequent storm surges. In response, the community has started a managed relocation with support from the Native Village of Unalakleet (NVU) and the National Renewable Energy Lab (NREL)’s Alaska campus in Fairbanks. The Unalakleet Climate NASA DEVELOP team partnered with NREL to provide remote sensing support and analysis for resilience planning in Unalakleet, supporting their ongoing relocation efforts and guiding future expansion. The team utilized Sentinel-1 C-Synthetic Aperture Radar (SAR), WorldView-2, and WorldView-3 datasets from 2017 – 2023 to analyze seasonal summer subsidence and utilized a 2014 Ancillary USGS 5 m Alaska DEM to conduct drainage network analyses that included watershed delineation and Height Above Nearest Drainage (HAND) analysis. The team also used high-resolution WorldView images to locate stable reference points that served as quality control for the team’s analyses. The team’s end products included maps containing subsidence and drainage zones information at and surrounding the relocation site. The team’s products provide NREL with valuable data that enables them to better assist Unalakleet’s managed relocation and assists Unalakleet with adapting to the catastrophic effects of climate change and build resilience in a community on the front lines of climate change.

Ian Lee↗

A Fluorescence‐Based Transient Expression Assay for the Analysis of Upstream Open Reading Frames in Plants

Upstream open reading frames (uORFs) are regulatory elements present in the 5′ leaders of mRNA that can significantly impact downstream gene expression in eukaryotes. In crop engineering, editing of uORFs can provide an avenue to upregulate expression of native genes without the need to add persistent transgenic copies. Even with genome-wide methods to identify translated uORFs such as ribosome profiling, their functional characterization depends on validation through reporter gene assays and mutagenesis studies. Current screening methods for plants use luciferases or protoplasts to measure differential gene expression between wild-type and mutated transcript leaders, which requires tissue processing and/or substrate addition. Here, we present a time- and cost-efficient alternative to investigate transcript leaders by co-expression of two fluorescent proteins in Nicotiana benthamiana leaf tissue and test our assay on genes involved in photoprotection, editing of which could provide a pathway to increase CO 2 assimilation during sun–shade transitions.

Nicotiana benthamiana↗

Analysis of normalized difference and surface temperature observations over southeastern Australia

Relations between radiative surface temperature (TR) and visible and near-IR reflectances expressed as the normalized difference (ND) from a Landsat Thematic Mapper scene are analyzed to examine the heat balance of agriculture and native evergreen forests in southeastern Australia. Factors determining the residual scatter about, and slope of, the TR/ND relationships were analyzed using a coupled two-layer soil-vegetation model of the surface heat balance. Inverse linear relationships were observed between TR and ND for agriculture, but not for forests. This was due to a wide range of ND and TR values in agricultural regions caused by wide variations in fractional vegetation cover.

Smith, R. C. G.↗

The geology, geochemistry, and geographic distribution of southern Idaho obsidian

The Snake River Plain Volcanic Province of Southern Idaho is host to an abundance of pyroclastic obsidian deposits that constitute the principal lithic raw material utilized by Native Americans of the region throughout the Precontact Period. Archaeologists have long looked to obsidian as a source of information on past patterns of raw material selection, landscape use, and mobility through geochemical analysis of obsidian artifacts and lithic raw materials. Formation of the Snake River Plain through cataclysmic “super-eruptions” of the Yellowstone hotspot, however, presents one of the most complex and poorly understood obsidian source-scapes of North America. To clarify the geographic distribution of Southern Idaho obsidian source groups, the INL CRMO has compiled a comprehensive reference library of geologic obsidian from 138 source locales distributed across the southern half of the state. In this report, we define 28 geochemically distinct obsidian source groups that occur at these deposits through X-ray Fluorescence spectrometry and contextualize the geographic distribution of each source group relative to the history of silicic magmatism on the Snake River Plain. This research facilitates ongoing investigations at the INL CRMO into patterns of obsidian procurement, conveyance, and exchange in Southern Idaho throughout the Precontact Period.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Matrix Approach to Accelerate Spin-Up of CLM5

Numerical models have been developed to investigate and understand responses of biogeochemical cycle to global changes. Steady state, when a system is in dynamic equilibrium, is generally required to initialize these model simulations. However, the spin-up process that is used to achieve steady state pose a great burden to computational resources, limiting the efficiency of global modeling analysis on biogeochemical cycles. This study introduces a new Semi-Analytical Spin-Up (SASU) to tackle this grand challenge. We applied SASU to Community Land Model version 5 and examined its computational efficiency and accuracy. At the Brazil site, SASU is computationally 7 times more efficient than (or saved up to 86% computational cost in comparison with) the traditional native dynamics (ND) spin-up to reach the same steady state. Globally, SASU is computationally 8 times more efficient than the accelerated decomposition spin-up and 50 times more efficient than ND. In summary, SASU achieves the highest computational efficiency for spin-up on site and globally in comparison with other spin-up methods. It is generalizable to wide biogeochemical models and thus makes computationally costly studies (e.g., parameter perturbation ensemble analysis and data assimilation) possible for a better understanding of biogeochemical cycle under climate change.

54 ENVIRONMENTAL SCIENCES↗

Inadvertent Hatchery Rainbow Trout Oncorhynchus mykiss Discovered in Native Westslope Cutthroat Trout Oncorhynchus clarkii lewisi Habitat: A Cautionary Tale

Abstract Fish hatcheries across North America release billions of fish into the wild every year to augment harvest opportunities in sport, commercial, and tribal fisheries, as well as to recover depressed populations. Despite these benefits, wild fish populations may be negatively affected when hatchery fish compete and/or hybridize with native species. Native Westslope Cutthroat Trout Oncorhynchus clarkii lewisi have decreased by 90% across their historic range; however, the Flathead River in Montana is a rangewide stronghold for these imperiled fish. The primary threat to Westslope Cutthroat Trout is hybridization with invasive Rainbow Trout O. mykiss, which leads to hybrid swarm formation and genomic extinction. We collected Rainbow Trout in Mill Creek, a tributary of the Flathead River, downstream from a hatchery that produces the species, and used otolith 87Sr/86Sr to determine whether individual fish were inadvertently introduced from the hatchery. Differences in 87Sr/86Sr among water samples from Mill Creek and the marine-derived hatchery food provided high-classification accuracy to determine the natal origins of Mill Creek Rainbow Trout. We found that 83 of the 106 Rainbow Trout collected (78%) were of hatchery origin. Otolith microstructure analysis indicated these fish had been in Mill Creek for ~1–32 weeks prior to capture. Our results illustrate the utility of otolith 87Sr/86Sr to identify hatchery fish in natural habitats and point to a source of invasive Rainbow Trout that pose conservation risks to native fishes in the drainage.

60 APPLIED LIFE SCIENCES↗

Exploring how urban form and demographics are linked with pedestrian and bicycle safety

With pedestrian and bicycle safety as the focus, this study investigates the role of urban form, burdened communities (BCs), and demographics at the national level. Urban form can contribute to segregation, limiting access to crucial resources such as safe infrastructure, essential services, and economic opportunities. Leveraging recent data, this research applies six key indicators to identify BCs based on various socioeconomic and environmental factors. Here, the study creates a unique database combining 10 years of pedestrian-bicycle-involved fatal crashes with data for the 71,729 census tracts with burden indicators and census data. The data are analyzed using descriptives and rigorous zero-hurdle negative binomial models, which account for excessive zeros observed in the data. The inference-based analysis results reveal a positive correlation between burden indicators and pedestrian-bicycle-involved fatal crash occurrences, alongside a heightened risk in areas with high-intensity development. Higher Black, American Indian, or Alaska Native populations are associated with more fatal crashes. The study offers novel insights into safety dynamics across different contexts characterized by urban forms, BCs, and demographics. The study underscores the importance of targeted interventions to enhance pedestrian and bicycle safety.

bicycle crashes↗

Regridding uncertainty for statistical downscaling of solar radiation

Abstract. Initial steps in statistical downscaling involve being able to compare observed data from regional climate models (RCMs). This prediction requires (1) regridding RCM outputs from their native grids and at differing spatial resolutions to a common grid in order to be comparable to observed data and (2) bias correcting RCM data, for example via quantile mapping, for future modeling and analysis. The uncertainty associated with (1) is not always considered for downstream operations in (2). This work examines this uncertainty, which is not often made available to the user of a regridded data product. This analysis is applied to RCM solar radiation data from the NA-CORDEX (North American Coordinated Regional Climate Downscaling Experiment) data archive and observed data from the National Solar Radiation Database housed at the National Renewable Energy Lab. A case study of the mentioned methods over California is presented.

14 SOLAR ENERGY↗

Differential effects of redox conditions on the decomposition of litter and soil organic matter

Soil redox conditions exert substantial influence on biogeochemical processes in terrestrial ecosystems. Humid tropical forests are often characterized by fluctuating redox dynamics, yet how redox fluctuations affect patterns in soil versus litter decomposition and associated CO2 fluxes are not well understood in these ecosystems. We used a 13C-labeled litter addition to explicitly follow the decomposition of litter-derived vs. native soil-derived organic matter in response to four different soil redox regimes—static oxic or anoxic, and two oscillating treatments—in soil from the Luquillo Experimental Forest, Puerto Rico. We coupled this incubation experiment with high-resolution mass spectrometry analysis to characterize the preferential decomposition of specific classes of organic molecules. CO2 production from litter and soil organic matter (SOM) showed distinctly different responses to redox manipulation. The cumulative production of SOM-derived CO2 was positively correlated with the length of soil exposure to an oxic headspace (r = 0.89, n = 20), whereas cumulative 13C-litter-derived CO2 production was not linked to oxygen availability. The CO2 production rate from litter was highest under static anoxic conditions in the first half of the incubation period, and later dropped to the lowest among all redox treatments. In the consistently anoxic soils, we observed the depletion of more oxidized water-extractable organic matter (especially amino sugars, carbohydrates, and proteins) over time, suggesting that under anaerobic conditions, microbes preferentially used more oxidized litter-derived compounds during the early stages of decomposition. Results from kinetic modeling showed that more frequent anoxic exposure limited the decomposition of a slow-cycling C pool, but not a fast-cycling pool. Overall, our results demonstrate that substrate source—freshly added litter vs. native organic matter—plays an important role in the redox sensitivity of organic matter decomposition. In soil environments that regularly experience redox fluctuations, anaerobic heterotrophs can be surprisingly effective in degrading fresh plant litter.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Structural insights into VRC01-class bnAb precursors with diverse light chains elicited in the IAVI G001 human vaccine trial

The development of germline-targeting vaccines represents a potentially transformative strategy to elicit broadly neutralizing antibodies (bnAbs) against HIV and other antigenically diverse pathogens. Here, we report on structural characterization of vaccine-elicited VRC01-class bnAb precursors in the IAVI G001 Phase 1 clinical trial with the eOD-GT8 60mer nanoparticle as immunogen. High-resolution X-ray structures of eOD-GT8 monomer complexed with Fabs of five VRC01-class bnAb precursors with >90% germline identity revealed a conserved mode of binding to the HIV CD4-binding site via IGHV1-2-encoded heavy chains, mirroring mature bnAb interactions. The light-chain V-gene diversity emulated VRC01 bnAbs and stabilized antigen engagement, while their conserved five-residue LCDR3 motifs prevented steric clashes. Notably, the VRC01-class bnAb precursors accommodated the N276 glycan, a key barrier in HIV Env recognition, through structural rearrangements in HCDR3 or LCDR1, despite its absence in the immunogen. Surface plasmon resonance analysis showed that 87% of elicited antibodies retained glycan binding capacity, albeit with reduced affinity. These findings validate the ability of eOD-GT8 60mer nanoparticles to prime VRC01-class bnAb precursors with native-like paratopes but with intrinsic glycan adaptability. Structural mimicry of mature bnAbs was observed even with limited somatic hypermutation, indicating that critical features are encoded in the germline repertoire. The structures highlight how germline-encoded features drive bnAb-like recognition at early stages. This work provides molecular evidence supporting germline targeting in humans and provides guidance for designing booster immunogens to shepherd affinity maturation toward broad neutralization.

Science & Technology - Other Topics↗

Extraction of an urease-active organo-complex from soil.

Description of an extraction from a Dublin clay loam soil of a colloidal organic matter complex that is urease active and, by X-ray analysis, free of clays. Urease activity in the clay-free precipitates, as in the soil, was not destroyed by the activity of an added proteolytic enzyme, pronase. This is attributed to the circumstance that native soil urease resides in organic colloidal particles with pores large enough for water, urea, ammonia, and carbon dioxide to pass freely, but nevertheless small enough to exclude pronase.

Burns, R. G.↗

Cumulus: NASA's Cloud Based Distributed Active Archive Center Prototype

NASAs Earth Science Data System (ESDS) Program serves as a central cog in order to facilitate the implementation of NASA's Earth Science strategic plan. Since 1994, the ESDS Program has committed to the full and open sharing of Earth science data obtained from NASA instruments to all users. One of the key responsibilities of the ESDS Program is to continuously evolve the entire data and information system to maximize returns on the collected NASA data. An independent review was conducted in 2015 to holistically review the EOSDIS in order to identify gaps. The review recommendations were to investigate two areas: one, whether commercial cloud providers offer potential for storage, processing, and operational efficiencies, and two, the potential development of new data access and analysis paradigms. In response, ESDS has initiated several prototypes investigating the advantages and risks of leveraging cloud computing. This paper describes one such prototyping activity named Cumulus. Cumulus is being designed and developed as a "native" cloud-based data ingest, archive and management system that can be used for all future NASA Earth science data streams. Cumulus will foster design of new analysisvisualization tools that can leverage collocated data from all of the distributed DAACs as well as elastic cloud computing resources.

Earth Science Informatics↗

MERRA-2 Data and Analytic Services at NASA GES DISC for Climate Extremes Study

NASA's climate reanalysis datasets from the Modern Era Retrospective-analysis for Research and Applications, Version 2 (MERRA-2) contains numerous long-term atmosphere, land, and ocean data products from 1980-present. MERRA-2 datasets, such as precipitation, soil moisture, and temperature, have been used widely to study extreme events. The native archived MERRA-2 data files are day-file (hourly time interval) and month-file, containing up to 125 parameters in one file. Due to the large number of data files and volumes, it is challenging for users, especially the applications research community, to handle the original hourly data files for long time periods to analyze extreme events. In this presentation, we review MERRA-2 data for studies of extreme conditions, and demonstrate analytic services at the NASA Goddard Earth Sciences Data and Information Services Center (GES DISC). One of the current operational services, 'subsetter', allows users to download only specific data of interest, i.e. data selected by parameter, region, and time period. New services are under development that will provide more 'on-the-fly' statistical calculations when downloading data; improve efficiency when accessing long time-series data. We will provide additional "How-to" resources that include step-by-step instructions on data access and usage. We have tested restructuring of day-files in an optimized data cube, which has significantly improved system performance for accessing long time-series. Overall performance is associated with cube size and structure, data compression method, and how the data are accessed. The optimized data cube structure will enable better online analytic services for statistical analysis and extreme events mining. To demonstrate the service, we use an extreme drought associated with the anomalous 2016 monsoon over southern Asia. This prototype time-series service may be augmented in the cloud infrastructure in the future.

data access↗