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At least 235 records · Page 13

Data Sharing in Radiation Biology: Towards FAIR

The value of scientific data depends on their findability, accessibility, integrability and reusability according to the FAIR principles. Together with the sustainability of data preservation and access, these principles underpin the long term benefits of scientific research. Within the domain of radiobiology we have a huge array of data types, themes and complexities which make standardisation of metadata, data structure and data integration very challenging. Moreover, it is clear that, for example, in the area of disaster preparedness, the ready discovery and availability of multiple types of data, for example on biological effects of exposure, climatology, ecology, human behavioural and attitudinal studies, is important for an integrated scientific approach. Because these data are spread over many databases, journal supplementary information resources and even the computers of the investigators, their discovery and reuse can be challenging. Despite exhortations from funding agencies and scientific institutions over the past two decades there is still a serious deficit in the willingness and in some cases the ability of investigators to share data, and although much may not be formally "Public domain“, information about the existence of the data, their metadata, and how to obtain them should always be available. We report the progress of work on three databases, the STORE and the NASA GeneLab and LSDA repositories to leverage the Radiation Biology Ontology (RBO), a structured terminology for metadata that can be used by all radiation biology-relevant databases to unite federated and automated data searches across multiple databases, for example using web services, and through semantic web technologies supporting data discovery. The initial primary use-cases for RBO were archiving data in the STORE database (https://www.storedb.org/), the repository used for the RadoNorm and Pianoforte Projects among others, and in the NASA Open Science Data Repository (https://osdr.nasa.gov/bio). The scope of radiobiology research ranges from basic physics to radiation oncology to sociolegal studies; no existing ontology had the necessary breadth or depth to fulfill this need. In addition, a formal ontology has the advantage of being usable for machine learning and, importantly, for tasks like data integration, knowledge extraction from the scientific literature and for query extension and data classification. Standardisation of metadata is one of the primary objectives of the FAIR principles for open data; RBO is an important landmark for FAIR-compliant radiation biology data sharing. The RBO is developed using the open-source tools of GitHub and the OBO Foundry-led Ontology Development Kit, and published through GitHub and the NIH/NCBI BioPortal website. This initial phase of concept modeling has yielded an ontology that has more than 300 declared concepts, with more than 3500 additional concepts imported from other OBO Foundry ontologies with relevance to radiation biology (for example, concepts from the ISO standard Basic Formal Ontology, the Environment Ontology and the Gene Ontology). We welcome input into the development of RBO and encourage its adoption.

ontologies↗

Machine Learning for Biological Trajectory Classification Applications

Machine-learning techniques, including clustering algorithms, support vector machines and hidden Markov models, are applied to the task of classifying trajectories of moving keratocyte cells. The different algorithms axe compared to each other as well as to expert and non-expert test persons, using concepts from signal-detection theory. The algorithms performed very well as compared to humans, suggesting a robust tool for trajectory classification in biological applications.

Sbalzarini, Ivo F.↗

Automated Analysis of a Large-Scale Sky Survey: The SKICAT System

We describe the application of decision tree based classification techniques to the development of an automated tool for the reduction of a large scientific data set. The primary benefits of the SKICAT approach are increased data reduction throughput, repeatability, and consistency of classification.

data analysis image databases↗

Machine Learning Models to Predict Cognitive Impairment of Rodents Subjected to Space Radiation

This research uses machine-learned computational analyses to predict the cognitive performance impairment of rats induced by irradiation. The experimental data in the analyses is from a rodent model exposed to ≤ 15 cGy of individual Galactic Cosmic Radiation (GCR) ions: 4He, 16O, 28Si, 48Ti, or 56Fe, expected for a Lunar or Mars mission. This work investigates rats at a subject-based level and uses performance scores taken before irradiation to predict impairment in Attentional Set-shifting (ATSET) data post-irradiation. Here, the worst performing rats of the control group define the impairment thresholds based on population analyses via cumulative distribution functions, leading to the labeling of impairment for each subject. A significant finding is the exhibition of a dose-dependent increasing probability of impairment for 1 to 10 cGy of 28Si or 56Fe in the Simple Discrimination (SD) stage of the ATSET, and for 1 to 10 cGy of 56Fe in the Compound Discrimination (CD) stage. On a subject-based level, implementing Machine Learning (ML) classifiers such as the Gaussian Naïve Bayes, Support Vector Machine, and Artificial Neural Networks identifies rats that have a higher tendency for impairment after GCR exposure. The algorithms employ the experimental prescreenperformance scores as multidimensional input features to predict each rodent’s susceptibility to cognitive impairment due to space radiation exposure. The receiver operating characteristic and the precision-recall curves of the ML models show a better prediction of impairment when 56Feis the ion in question in both SD and CD stages. They, however, do not depict impairment due to 4Hein SD and 28Siin CD, suggesting no dose-dependent impairment response in these cases. One key finding of our study is that prescreen performance scores can be used to predict the ATSET performance impairments. This result is significant to crewed space missions as it supports the potential of predicting an astronaut’s impairment in a specific task before spaceflight through the implementation of appropriately trained ML tools. Future research can focus on constructing ML ensemble methods to integrate the findings from the methodologies implemented in this study for morerobust predictionsof cognitive decrements due to space radiation exposure.

space radiation↗

Landslide Mapping Using Object-Based Image Analysis and Open Source Tools

Availability of high-resolution optical imagery and advances in image processing technologies have significantly improved our ability to map landslides. In recent years object-based image analysis (OBIA) has been gaining in popularity for landslide mapping due to its ability to incorporate spectral, textural, morphological and topographical properties. Many studies have been conducted based on commercial software. In this study, we create an open source Semi-Automatic Landslide Detection (SALaD) system utilizing OBIA and machine learning. Configured to run in Linux environment, it uses various opensource Python packages and modules. This system was tested in 575 km2 area along the Pasang Lhamu Highway, Nepal where large numbers of landslides were triggered by the 2015 Gorkha earthquake. Comparison with a manual inventory highlighted that this system was able to detect 70% of the landslide area. The speed and efficiency with which this system was able to detect landslides makes it a viable alternative to manual techniques for landslide mapping over large areas, when establishing approximate landslide locations is of prime importance.

Open source↗

Convolutional Autoencoder for Defect Detection in Additive Manufacturing

The core idea behind using machine learning (ML) for defect detection is that it can be used to detect flaws as they are being formed in an AM part. As the part is being made, a near-infrared (NIR) sensor records each layer and creates an image of the entire build layer. These images, usually thousands, can be compiled into a ‘3D’ array of the entire part. ML tools, such as a convolutional autoencoder (CAE) can go through these images and highlight potential anomalous regions of your part.

In-Situ Monitoring↗

Phenomena Portal: Large- Scale Visual Exploration of Atmospheric Phenomena

The Earth science community is experiencing a high influx of remote sensing data due to recent advancements in sensor technology. This enables the community to extend their research on a larger scale than ever before. Unfortunately, traditional data processing techniques do not scale well to these new, high volume data sources. State-of-the-art machine learning (ML) pipelines have been proven to overcome these burdens in various other fields but are underexploited within the physical sciences community. Moreover, ML is reliant on labeled data, which is currently sparsely available, owing to the fact that ML adoption is still in the early stages within the Earth and atmospheric science communities. To address these issues, we developed the Phenomena Portal, a visual exploration tool that uses ML to detect various atmospheric phenomena on a global scale. This allows the Earth and atmospheric science communities to view trends of occurrences of phenomena, identify potential relationships between them, and analyze spatiotemporal patterns over time. These detections can also serve as initial labeled data for ML research pertaining to the respective phenomena. The tool also incorporates feedback from subject matter experts to further improve the model detection accuracy, thereby facilitating human-in-the-loop. This presentation will provide an overview of the ML model development and cloud deployment. We also discuss the capabilities of the user interface for displaying the detections.

Muthukumaran Ramasubramanian↗

A Brief Introduction to AI/ML Applications of Air Traffic Management Data at NASA Ames

This presentation will give a brief overview of several AI/ML This presentation will give a brief overview of several AI/ML projects that NASA Ames interns are exploring in partnership with NASA Aeronautic Research Institute (NARI) and the FAA. NASA is interested in Natural Language Processing (NLP) of various legacy text and speech data within air traffic management e.g., Notices To Airmen (NOTAMs), Letters of Agreement (LoAs), Standard Operating Procedures (SOPs), and Air Traffic Control Center audio briefings. Since our focus is on applying state of the art AI/ML tools to legacy air traffic management data, we first showcase the different data sources of interest followed by a brief introduction to the techniques and language models used. We present some exciting preliminary results on each topic including both unsupervised learning techniques (e.g., clustering) and other modern language models (e.g., BERT) that help extract useful information from these data sources that are interpretable by both man and machine.

Air Traffic Management↗

Development of TEMPO Products and Tools to Support Air Quality Management Decisions

The TEMPO mission has been observing air pollutants every hour during the daytime across its Field of Regard (FoR) covering greater North America since First Light on August 2, 2023. The highly anticipated public release of TEMPO data occurred on May 20, 2024, consisting of level 2 and level 3 trace gas data products of nitrogen dioxide, formaldehyde, and ozone. Our project at the NASA SPoRT Center is developing value-added products and tools to support the TEMPO mission and Early Adopters program with special attention on the air quality management community. The initial focus of this project is evaluating the TEMPO products over stakeholder target areas using Pandora and surface monitor observations. Methods for oversampling TEMPO data to 1 km resolution are being applied over the target areas to resolve fine-scale emission sources and pollutant gradients. Machine learning techniques using TEMPO, surface monitor, and model data to estimate surface-level nitrogen dioxide concentrations are being developed over the target areas. Our SPoRT viewer has been updated to include visualizations of the TEMPO products and an ArcGIS dashboard is being designed for enabling air quality management stakeholders to efficiently analyze TEMPO data. Training materials including user guides are being developed to ensure the effective and sustained use of TEMPO data in air quality management applications. The major outcome of this project is to support the inclusion of TEMPO data in exceptional event demonstrations by active engagement with stakeholders and ultimately enable more informed air quality management decisions in the future. This talk will provide an update on our project activities and showcase use cases of TEMPO data for monitoring different emission sources including wildland fire smoke.

air quality↗

Neural-Network-Development Program

NETS, software tool for development and evaluation of neural networks, provides simulation of neural-network algorithms plus computing environment for development of such algorithms. Uses back-propagation learning method for all of networks it creates. Enables user to customize patterns of connections between layers of network. Also provides features for saving, during learning process, values of weights, providing more-precise control over learning process. Written in ANSI standard C language. Machine-independent version (MSC-21588) includes only code for command-line-interface version of NETS 3.0.

Phillips, Todd A.↗

Regression Analysis of Top of Descent Location for Idle-thrust Descents

In this paper, multiple regression analysis is used to model the top of descent (TOD) location of user-preferred descent trajectories computed by the flight management system (FMS) on over 1000 commercial flights into Melbourne, Australia. The independent variables cruise altitude, final altitude, cruise Mach, descent speed, wind, and engine type were also recorded or computed post-operations. Both first-order and second-order models are considered, where cross-validation, hypothesis testing, and additional analysis are used to compare models. This identifies the models that should give the smallest errors if used to predict TOD location for new data in the future. A model that is linear in TOD altitude, final altitude, descent speed, and wind gives an estimated standard deviation of 3.9 nmi for TOD location given the trajec- tory parameters, which means about 80% of predictions would have error less than 5 nmi in absolute value. This accuracy is better than demonstrated by other ground automation predictions using kinetic models. Furthermore, this approach would enable online learning of the model. Additional data or further knowl- edge of algorithms is necessary to conclude definitively that no second-order terms are appropriate. Possible applications of the linear model are described, including enabling arriving aircraft to fly optimized descents computed by the FMS even in congested airspace. In particular, a model for TOD location that is linear in the independent variables would enable decision support tool human-machine interfaces for which a kinetic approach would be computationally too slow.

trajectory prediction↗

The Real Time Interactive Display Environment (RTIDE), a display building tool developed by Space Shuttle flight controllers

NASA's Mission Control Center, located at Johnson Space Center, is incrementally moving from a centralized architecture to a distributed architecture. Starting with STS-29, some host-driven console screens will be replaced with graphics terminals driven by workstations. These workstations will be supplied realtime data first by the Real Time Data System (RTDS), a system developed inhouse, and then months later (in parallel with RTDS) by interim and subsequently operational versions of the Mission Control Center Upgrade (MCCU) software package. The Real Time Interactive Display Environment (RTIDE) was built by Space Shuttle flight controllers to support the rapid development of multiple new displays to support Shuttle flights. RTIDE is a display building tool that allows non-programmers to define object-oriented, event-driven, mouseable displays. Particular emphasis was placed on upward compatibility between RTIDE versions, ability to acquire data from different data sources, realtime performance, ability to modularly upgrade RTIDE, machine portability, and a clean, powerful user interface. The operational and organizational factors that drove RTIDE to its present form, the actual design itself, simulation and flight performance, and lessons learned in the process are discussed.

Kalvelage, Thomas A.↗

Biocene 2018

This 'minds-on' workshop will explore emerging cross-discipline tools and techniques for moving Bio-Inspired Design (BID) into “standard practice” in systems engineering and engineering design. Discussion will center on state-of-the-art in BID tools, emerging toolkits for engineering innovation, and industry best practices. The aerospace industry is at a point where components are reaching design maturity and performance improvements are incremental. Aggressive goals for fuel burn reduction and the threat of climate change necessitate a new paradigm. An artificial intelligence (AI) approach that enables revolutionary changes in system architecture, mission analysis and performance metrics is needed. The growing interest and development in the field of machine learning presents an opportunity to speed up by 10 times or more the discovery, analysis and development of aerospace systems using artificial intelligence and natural systems.

Shyam, Vikram↗

Cluster Analysis of Spectroscopic Line Profiles and EUV Emission in RMHD Simulations and Observations of the Solar Atmosphere

Spatially-resolved observations from the IRIS, SDO/AIA, and other space mission and ground-based telescopes, coupled with realistic 3D RMHD simulations, are a powerful tool for analysis of processes in the solar atmosphere. To better understand the dynamical and thermodynamic properties in the simulation data and their connection to observations, it is essential to determine similarities in the behaviors of the synthesized and observed emission. However, the complexity of observational data and physical processes makes comparison of observations and modeling results difficult. In this work, we show the initial results of application of K-Means clustering (unsupervised machine learning) algorithm to two different problems: 1) recognition of the typical spectroscopic line profiles observed by IRIS during solar flares and their typical dynamic behavior; 2) recognition of shocks and heating events in synthetic AIA emission data obtained from StellarBox quiet-Sun simulations. The average silhouette width technique for the KMeans algorithm is utilized in different ways to obtain optimal numbers of clusters. We discuss application of the emission clustering to visualizations of the computational volume, understanding its evolutionary trends and behavior patterns, and inversion (reconstruction) of physical properties of the solar atmosphere from synthesizes emission data.

Sadykov, Viacheslav↗

Development of an Airspace Simulation and Modeling Tool for Enhanced Spectrum Management

The emergence of new aerial vehicles into the National Airspace System creates an increased demand for aeronautical communications to support aviation operations. However, the issue of spectrum scarcity remains an ever-present concern, and the growing demand cannot be supported using existing spectrum allocation strategies. As a result, a new spectrum management approach is required, and the National Aeronautics and Space Administration (NASA) is investigating advanced concepts to modernize the management and use of aviation spectrum by leveraging the latest advancements in wireless communications, big data and machine learning. This research proposes an autonomous spectrum allocation concept, which allocates communications resources, such as spectrum and power, based on the predicted communications and air traffic demands throughout the airspace, as opposed to the use of fixed allocations as is done today. This approach will result in improved spectrum utilization efficiency and enhanced airspace capacity. The autonomous spectrum allocation concept decomposes into three research areas: demand prediction, resource allocation, and use case evaluation. As part of the use case evaluation effort, a modeling and simulation capability is currently under development. This simulation capability includes the implementation of various features, including visualization of both live or virtually-generated airspace traffic, simulation scenario development, simulation management with data collection, and flight plan creation with corresponding trajectory generation. This modeling and simulation capability will continue to evolve as new and advanced airspace applications are introduced into existing and emerging operational environments.

Eric J. Knoblock↗

Launching to the Moon, Mars, and Beyond

The U.S. Vision for Space Exploration, announced in 2004, calls on NASA to finish constructing the International Space Station, retire the Space Shuttle, and build the new spacecraft needed to return to the Moon and go on the Mars. By exploring space, America continues the tradition of great nations who mastered the Earth, air, and sea, and who then enjoyed the benefits of increased commerce and technological advances. The progress being made today is part of the next chapter in America's history of leadership in space. In order to reach the Moon and Mars within the planned timeline and also within the allowable budget, NASA is building upon the best of proven space transportation systems. Journeys to the Moon and Mars will require a variety of vehicles, including the Ares I Crew Launch Vehicle, the Ares V Cargo Launch Vehicle, the Orion Crew Exploration Vehicle, and the Lunar Surface Access Module. What America learns in reaching for the Moon will teach astronauts how to prepare for the first human footprints on Mars. While robotic science may reveal information about the nature of hydrogen on the Moon, it will most likely tale a human being with a rock hammer to find the real truth about the presence of water, a precious natural resource that opens many possibilities for explorers. In this way, the combination of astronauts using a variety of tools and machines provides a special synergy that will vastly improve our understanding of Earth's cosmic neighborhood.

Dumbacher, Daniel L.↗

Statistical learning framework for safety and failure analysis of a DNN-based autonomous aircraft system

Deep Neural Networks (DNNs) and Machine Learning technology is increasingly used for safety-critical applications in the Aerospace domain. To ensure safe operations, the DNN and the system must undergo rigorous verification and validation, including advanced statistical analyses. Performance and safety of the DNN and system behavior must not only be analyzed for the nominal case, but under numerous off-nominal and failure cases. In this paper we will describe how our statistical learning framework SYSAI can efficiently perform such analyses using the tool’s unique combination of advanced learning modeling and statistical analysis techniques. SYSAI can effectively explore the high-dimensional state and failure space of the system under test; geometrical shape detection of safety regions and boundaries support explainability of the results to the designer. In this paper, we report experiments and results obtained with a vision-based DNN control system (ACT) that is capable of autonomously steering an aircraft down a runway.

Yuning He↗