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At least 235 records · Page 13

The dynamics of superclusters - Initial determination of the mass density of the universe at large scales

The radial velocities of cluster members of two rich, large superclusters have been measured in order to probe the supercluster mass densities, and simple evolutionary models have been computed to place limits upon the mass density within each supercluster. These superclusters represent true physical associations of size of about 100 Mpc seen presently at an early stage of evolution. One supercluster is weakly bound, the other probably barely bound, but possibly marginally unbound. Gravity has noticeably slowed the Hubble expansion of both superclusters. Galaxy surface-density counts and the density enhancement of Abell clusters within each supercluster were used to derive the ratio of mass densities of the superclusters to the mean field mass density. The results strongly exclude a closed universe.

Ford, H. C.↗

Allometric Trophic Networks From Individuals to Socio-Ecosystems: Consumer–Resource Theory of the Ecological Elephant in the Room

A well-known parable is that of the blind men studying an elephant each of which assert the elephant is the part they first hold in their hands, e.g., “rope!” says the tail holder while the leg holder asserts “tree!” The various subdisciplines of ecology appear similar in that we each engage in our enthusiastic but at least somewhat myopic study with remarkably limited agreement or even discussion about the overall system which we all study. Allometric trophic network (ATN) theory offers a path out of this dilemma by integrating across scales, taxa, habitats and organizational levels from physiology to ecosystems based on consumer-resource interactions among co-existing organisms. The network architecture and the metabolic and behavioral processes that determine the structure and dynamics of these interactions form the first principles of ATN theory, which in turn provides a synthetic overview and powerfully predictive framework for ecology from organisms to ecosystems. Beyond ecology, ATN theory also synthesizes eco-evolutionary and socio-ecological research still largely based on consumer-resource mechanisms but respectively integrated with different processes including natural selection and market mechanisms. This paper briefly describes foundations, advances, and future directions of ATN theory including predicting an ecosystem’s phenotype from its community’s genotype in order to accelerate more predictive and unified understanding of the complex systems studied by ecologists and other environmental scientists.

54 ENVIRONMENTAL SCIENCES↗

Evolution of a plant gene cluster in Solanaceae and emergence of metabolic diversity

Plants produce phylogenetically and spatially restricted, as well as structurally diverse specialized metabolites via multistep metabolic pathways. Hallmarks of specialized metabolic evolution include enzymatic promiscuity and recruitment of primary metabolic enzymes and examples of genomic clustering of pathway genes. Solanaceae glandular trichomes produce defensive acylsugars, with sidechains that vary in length across the family. We describe a tomato gene cluster on chromosome 7 involved in medium chain acylsugar accumulation due to trichome specific acyl-CoA synthetase and enoyl-CoA hydratase genes. This cluster co-localizes with a tomato steroidal alkaloid gene cluster and is syntenic to a chromosome 12 region containing another acylsugar pathway gene. We reconstructed the evolutionary events leading to this gene cluster and found that its phylogenetic distribution correlates with medium chain acylsugar accumulation across the Solanaceae. This work reveals insights into the dynamics behind gene cluster evolution and cell-type specific metabolite diversity.

59 BASIC BIOLOGICAL SCIENCES↗

Induced and permanent magnetism on the moon - Structural and evolutionary implications.

It is shown that the moon possesses an extraordinary response to induction from the solar wind due to a combination of a high interior electrical conductivity together with a relatively resistive crustal layer into which the solar wind dynamic pressure forces back the induced field. The dark side response, devoid of solar wind pressure, is approximately that expected for the vacuum case. These data permit an assessment of the interior conductivity and an estimate of the thermal gradient in the crustal region. The discovery of a large permanent magnetic field at the Apollo 12 site corresponds approximately to the paleomagnetic residues discovered in both Apollo 11 and 12 rock samples. The implications regarding an early lunar magnetic field are discussed and it is shown that among the various conjectures regarding the early field the most prominent are either an interior dynamo or an early approach to the earth though no extant model is free of difficulties.

Sonett, C. P.↗

Flare loop radiative hydrodynamics. I - Basic methods

The study presented here has two goals. The first is to examine the role of energy transport mechanisms in flare dynamics, for instance, thermal cone conduction in the corona and radiative transfer in the chromosphere. The second is to provide diagnostics of flare energization processes by predicting the evolutionary behavior of concurrent emissions from all regions of the flaring atmosphere. To attain these ends, a numerical method is developed for the simultaneous solution of thy continuity, momentum, and energy equations; the time-dependent atomic rate equations describing ionization and excitation; and the radiative transfer equations. With the physical model and computational methods used here, all components of the plasma move as a single fluid and in the initial studies are assumed to have a common kinetic temperature. The plasma is constrained to move in one dimension along the axis of a loop of nonuniform cross section, the geometry of which is defined by a sufficiently strong magnetic field.

Mcclymont, A. N.↗

Space station WP-04 power system. Volume 1: Executive summary

Major study activities and results of the phase B study contract for the preliminary design of the space station Electrical Power System (EPS) are summarized. The areas addressed include the general system design, man-tended option, automation and robotics, evolutionary growth, software development environment, advanced development, customer accommodations, operations planning, product assurance, and design and development phase planning. The EPS consists of a combination photovoltaic and solar dynamic power generation subsystem and a power management and distribution (PMAD) subsystem. System trade studies and costing activities are also summarized.

Hallinan, G. J.↗

Long Term Manipulations of Intact Microbial Mat Communities in a Greenhouse Collaboratory: Simulating Earth's Present and Past Field Environments

Photosynthetic microbial mat communities were obtained from marine hypersaline saltern ponds, maintained in a greenhouse facility, and examined for the effects of salinity variations. Because these microbial mats are considered to be useful analogs of equivalent ancient marine communities, they offer insights about evolutionary events during the greater than 3 billion year time interval wherein mats co-evolved with Earth's geosphere and atmosphere. Although photosynthetic mats can be highly dynamic and exhibit extremely high activity, the mats in the present study have been maintained for more than one year with relatively minor changes. The major groups of microorganisms, as assayed using microscopic, genetic, and biomarker methodologies, are essentially the same as those in the original field samples. Field and greenhouse mats were similar with respect to rates of exchange of oxygen and dissolved inorganic carbon across the mat-water interface, both during the day and at night. Field and greenhouse mats exhibited similar rates of efflux of methane and hydrogen. Manipulations of salinity in the water overlying the mats produced changes in the community that strongly resemble those observed in the field. A collaboratory testbed and an array of automated features are being developed to support remote scientific experimentation with the assistance of intelligent software agents. This facility will permit teams of investigators to explore ancient environmental conditions that are rare or absent today but might have influenced the early evolution of these photosynthetic ecosystems.

Bebout, Brad↗

Condensation Front Migration in a Protoplanetary Nebula

Condensation front dynamics are investigated in the mid-solar nebula region. A quasi-steady model of the evolving nebula is combined with equilibrium vapor pressure curves to determine evolutionary condensation fronts for selected species. These fronts are found to migrate inwards from the far-nebula to final positions during a period of 10(exp 7) years. The physical process governing this movement is a combination of local viscous heating and luminescent heating from the central star. Two luminescent heating models are used and their effects on the ultimate radial position of the condensation front are discussed. At first the fronts move much faster than the nebular accretion velocity, but after a time the accreting gas and dust overtakes the slowing condensation front.

Davis, Sanford S.↗

Territory and Population Attributes Affect Florida Scrub-Jay Fecundity in Fire Adapted Ecosystems

Fecundity, the number of young produced by a breeding pair during a breeding season, is a primary component in evolutionary and ecological theory and applications. Fecundity can be influenced by many environmental factors and requires long-term study due to the range of variation in ecosystem dynamics. Fecundity data often include a large proportion of zeros when many pairs fail to produce any young during a breeding season due to nest failure or when all young die independently after fledging. We conducted color banding and monthly censuses of Florida scrub-jays (Aphelocoma coerulescens) across 31 years, 15 populations, and 761 territories along central Florida’s Atlantic coast. We quantified how fecundity (juveniles/pair-year) was influenced by habitat quality, presence/absence of nonbreeders, population density, breeder experience, and rainfall, with a zero-inflated Bayesian hierarchical model including both a Bernoulli (e.g., brood success) and a Poisson (counts of young) submodel, and random effects for year, population, and territory. The results identified the importance of increasing “strong” quality habitat, which was a mid-successional state related to fire frequency and extent, because strong territories, and the proportion of strong territories in the overall population, influenced fecundity of breeding pairs. Populations subject to supplementary feeding also had greater fecundity. Territory size, population density, breeder experience, and rainfall surprisingly had no or small effects. Different mechanisms appeared to cause annual variation in fecundity, as estimates of random effects were not correlated between the success and count submodels. The increased fecundity for pairs with nonbreeders, compared to pairs without, identified empirical research needed to understand how the proportion of low-quality habitats influences population recovery and sustainability, because dispersal into low-quality habitats can drain nonbreeders from strong territories and decrease overall fecundity. We also describe how long term study resulted in reversals in our understanding because of complications involving habitat quality, sociobiology, and population density.

Long-term studies↗

Evolution in vitro: analysis of a lineage of ribozymes

Background: Catalytic RNAs, or ribozymes, possessing both a genotype and a phenotype, are ideal molecules for evolution experiments in vitro. A large, heterogeneous pool of RNAs can be subjected to multiple rounds of selection, amplification and mutation, leading to the development of variants that have some desired phenotype. Such experiments allow the investigator to correlate specific genetic changes with quantifiable alterations of the catalytic properties of the RNA. In addition, patterns of evolutionary change can be discerned through a detailed examination of the genotypic composition of the evolving RNA population. Results: Beginning with a pool of 10(13) variants of the Tetrahymena ribozyme, we carried out in vitro evolution experiments that led to the generation of ribozymes with the ability to cleave an RNA substrate in the presence of Ca2+ ions, an activity that does not exist for the wild-type molecule. Over the course of 12 generations, a seven-error variant emerged that has substantial Ca(2+)-dependent RNA-cleavage activity. Advantageous mutations increased in frequency in the population according to three distinct dynamics--logarithmic, linear and transient. Through a comparative analysis of 31 individual variants, we infer how certain mutations influence the catalytic properties of the ribozyme. Conclusions: In vitro evolution experiments make it possible to elucidate important aspects of both evolutionary biology and structural biochemistry on a reasonable short time scale.

Non-NASA Center↗

Reinforcement learning in discrete action space applied to inverse defect design

Abstract Reinforcement learning (RL) algorithms that include Monte Carlo Tree Search (MCTS) have found tremendous success in computer games such as Go, Shiga and Chess. Such learning algorithms have demonstrated super-human capabilities in navigating through an exhaustive discrete action search space. Motivated by their success in computer games, we demonstrate that RL can be applied to inverse materials design problems. We deploy RL for a representative case of the optimal atomic scale inverse design of extended defects via rearrangement of chalcogen (e.g. S) vacancies in 2D transition metal dichalcogenides (e.g. MoS 2 ). These defect rearrangements and their dynamics are important from the perspective of tunable phase transition in 2D materials i.e. 2H (semi-conducting) to 1T (metallic) in MoS 2 . We demonstrate the ability of MCTS interfaced with a reactive molecular dynamics simulator to efficiently sample the defect phase space and perform inverse design—starting from randomly distributed S vacancies, the optimal defect rearrangement of defects corresponds a line defect of S vacancies. We compare MCTS performance with evolutionary optimization i.e. genetic algorithms and show that MCTS converges to a better optimal solution (lower objective) and in fewer evaluations compared to GA. We also comprehensively evaluate and discuss the effect of MCTS hyperparameters on the convergence to solution. Overall, our study demonstrates the effectives of using RL approaches that operate in discrete action space for inverse defect design problems.

42 ENGINEERING↗

Dynamical Unification of Tidal Disruption Events

The ~100 tidal disruption events (TDEs) observed so far exhibit a wide range of emission properties both at peak and over their lifetimes. Some TDEs radiate predominantly at X-ray energies, while others radiate chiefly at UV and optical wavelengths. While the peak luminosities across TDEs show distinct properties, the evolutionary behavior can also vary between TDEs with similar peak emission properties. In particular, for optical TDEs, while their UV and optical emissions decline somewhat following the fallback pattern, some events can greatly rebrighten in X-rays at late time. In this Letter, we conduct three-dimensional general relativistic radiation magnetohydrodynamics simulations of TDE accretion disks at varying accretion rates in the regime of super-Eddington accretion. We make use of Monte Carlo radiative transfer simulations to calculate the reprocessed spectra at various inclinations and at different evolutionary stages. We confirm the unified model proposed by Dai et al., which predicts that the observed emission largely depends on the viewing angle of the observer with respect to the disk orientation. Furthermore, we find that disks with higher accretion rates have elevated wind and disk densities, which increases the reprocessing of the high-energy radiation and thus generally augments the optical-to-X-ray flux ratio along a particular viewing angle. This implies that at later times, as the accretion level declines, we expect that more X-rays will leak out along intermediate viewing angles. Such dynamical model for TDEs can provide a natural explanation for the diversity in the emission properties observed in TDEs at peak and along their temporal evolution.

79 ASTRONOMY AND ASTROPHYSICS↗

Structural motifs and bonding in two families of boron structures predicted at megabar pressures

The complex crystal chemistry of elemental boron has led to numerous proposed structures with distinctive motifs as well as contradictory findings. Herein, evolutionary structure searches performed at 100 GPa have uncovered a series of metastable phases of boron, and bonding analyses were carried out to elucidate their electronic structure. These polymorphs, dynamically stable at 100 GPa, were grouped into two families. Here, the first was derived from the thermodynamic minimum at these conditions, α-Ga, whereas channels comprised the second. Two additional intergrowth structures were uncovered, and it was shown they could be constructed by stacking layers of α-Ga-like and channel-like allotropes on top of each other. A detailed bonding analysis revealed networks of four-center σ-bonding functions linked by two-center B-B bonds in the α-Ga based structures, and networks that were largely composed of three-center σ-bonding functions in the channel-based structures. Seven of these high-pressure phases were found to be metastable at atmospheric conditions, and their Vickers hardnesses were estimated to ≈ 36 GPa.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Microbiome definition re-visited: old concepts and new challenges

The field of microbiome research has evolved rapidly over the past few decades, and has become a topic of great scientific and public interest. As a result of this rapid growth in interest covering different fields, we are lacking a clear commonly agreed definition of the term ‘microbiome’. Moreover, a consensus on best practices in microbiome research is missing. Recently, a panel of international experts discussed the current gaps in the frame of the European-funded MicrobiomeSupport project. The meeting brought together about 40 leaders from diverse microbiome areas, while more than a hundred experts from all over the world took part in an online survey accompanying the workshop. This article excerpts the outcomes of the workshop and the corresponding online survey embedded in a short historical introduction and uture outlook. We propose a definition of microbiome based on the compact, clear and comprehensive description of the term provided by Whipps et al. in 1988, amended with a set of novel recommendations considering the latest technological developments and research findings. We clearly separate the terms microbiome and microbiota, and provide a comprehensive discussion considering the composition of microbiota, the heterogeneity and dynamics of microbiomes in time and space, the stability and resilience of microbial networks, the definition of core microbiomes and functionally relevant keystone species as well as co-evolutionary principles of microbe-host and inter-species interactions within the microbiome. These broad definitions together with the suggested unifying concepts will help to improve standardization of microbiome studies in the future, and could be the starting point for an integrated assessment of data resulting in a more rapid transfer of knowledge from basic science into practice.

54 ENVIRONMENTAL SCIENCES↗

Operator split methods in the numerical solution of the finite deformation elastoplastic dynamic problem

The spatial formulation of the elastoplastic dynamic problem for finite deformations is considered. A thermodynamic argument leads to an additive decomposition of the spatial rate of deformation tensor and allows an operator split of the evolutionary equations of the problem into elastic and plastic parts. This operator split is taken as the basis for the definition of a global product algorithm. In the context of finite element discretization the product algorithm entails, for every time step, the solution of a nonlinear elastodynamic problem followed by the application of plastic algorithms that operate on the stresses and internal variables at the integration points and bring in the plastic constitutive equations. Suitable plastic algorithms are discussed for the cases of perfect and hardening plasticity and viscoplasticity. The proposed formalism does not depend on any notion of smoothness of the yield surface and is applicable to arbitrary convex elastic regions, with or without corners. The stabiity properties of the global product algorithm are shown to be identical to those of the algorithm used for the integration of the nonlinear elastodynamic problem. Numerical examples illustrate the accuracy of the method.

Pinsky, P. M.↗

Aerodynamic Design and Optimization of Fan Stage for Boundary Layer Ingestion Propulsion System

The present paper addresses the process of preliminary design of a low-pressure fan and outlet guide vane (OGV) of a boundary layer ingestion (BLI) propulsion system. The tail-cone thruster systems of NASA's STARC_ABL (Single-aisle Turboelectric Aircraft with an Aft Boundary-Layer propulsor) adopts an axi-symmetric BLI type inlet as opposed to other embedded engine systems. Thus, the focus of the present work is placed on maximizing the efficiency of the fan and OGV stages under a significant radial distortion. A parameterization with B-spline function for camber line angles, metal chord, thickness distribution and stacking axis of blades is presented. The flowpath lines are also parameterized by B-spline function and aggregated in the design system of blades. The design optimization with evolutionary algorithm is performed with constraints of fan pressure ratio, OGV exit swirl angle and nozzle exit properties. The inlet conditions for the turbo-machinery CFD (Computational Fluid Dynamics) domain and the design goal of the fan stage are driven by a propulsion airframe integration (PAI) model that uses a 3-D unstructured RANS (Reynolds Average Navier Stokes) solver and actuator disk model. The expected power saving of the BLI propulsor is quantified via PAI analysis and the resulting preliminary design of the fan stages is compared with a clean-inlet flow propulsor.

Turbo-machinery↗

Structural switching dynamically controls the doubly pseudoknotted Rous sarcoma virus–programmed ribosomal frameshifting element

A hallmark of retrovirus replication is the translation of two different polyproteins from one RNA through programmed –1 frameshifting. This is a mechanism in which the actively translating ribosome is induced to slip in the 5′ direction at a defined codon and then continues translating in the new reading frame. Programmed frameshifting controls the stoichiometry of viral proteins and is therefore under stringent evolutionary selection. Forty years ago, the first frameshifting stimulatory element was discovered in the Rous sarcoma virus. The ~120 nt RNA segment was predicted to contain a pseudoknot, but its 3D structure has remained elusive. Now, we have determined cryoEM and X-ray crystallographic structures of this classic retroviral element, finding that it adopts a butterfly-like double-pseudoknot fold. One “wing” contains a dynamic pyrimidine-rich helix, observed crystallographically in two conformations and in a third conformation via cryoEM. The other wing encompasses the predicted pseudoknot, which interacts with a second unexpected pseudoknot through a toggle residue, A2546. This key purine switches conformations between structural states and tunes the stability of interacting residues in the two wings. We find that its mutation can modulate frameshifting by as much as 50-fold, likely by altering the relative abundance of different structural states in the conformational ensemble of the RNA. Taken together, our structure–function analyses reveal how a dynamic double pseudoknot junction stimulates frameshifting by taking advantage of conformational heterogeneity, supporting a multistate model in which high Shannon entropy enhances frameshifting efficiency.

Science & Technology - Other Topics↗

Space Station Freedom Central Thermal Control System Evolution

The objective of the evolution study is to review the proposed growth scenarios for Space Station Freedom and identify the major CTCS hardware scars and software hooks required to facilitate planned growth and technology obsolescence. The Station's two leading evolutionary configurations are: (1) the Research and Development node, where the fundamental mission is scientific research and commercial endeavors, and (2) the Transportation node, where the emphasis is on supporting Lunar and Mars human exploration. These two nodes evolve from the from the assembly complete configuration by the addition of manned modules, pocket labs, resource nodes, attached payloads, customer servicing facility, and an upper and lower keel and boom truss structure. In the case of the R & D node, the role of the dual keel will be to support external payloads for scientific research. In the case of the Transportation node, the keel will support the Lunar (LTV) and Mars (MTV) transportation vehicle service facilities In addition to external payloads. The transverse boom is extended outboard of the alpha gimbal to accommodate the new solar dynamic arrays for power generation, which will supplement the photovoltaic system. The design, development, deployment, and operation of SSF will take place over a 30 year time period and new Innovations and maturation in technologies can be expected. Evolutionary planning must include the obsolescence and insertion of the new technologies over the life of the program, and the technology growth issues must be addressed in parallel with the development of the baseline thermal control system. Technologies that mature and are available within the next 10 years are best suited for evolutionary consideration as the growth phase begins in the year 2000. To increase TCS capability to accommodate growth using baseline technology would require some penalty in mass, volume, EVA time, manifesting, and operational support. To be cost effective the capabilities of the heat acquisition, transport, and rejection subsystems must be increased.

Bullock, Richard↗